public class SimpleBEDFeature extends java.lang.Object implements BEDFeature
Modifier and Type | Field and Description |
---|---|
protected java.lang.String |
chr |
protected int |
end |
protected int |
start |
protected Strand |
strand |
Constructor and Description |
---|
SimpleBEDFeature(int start,
int end,
java.lang.String chr) |
Modifier and Type | Method and Description |
---|---|
java.awt.Color |
getColor() |
java.lang.String |
getContig()
Gets the contig name for the contig this is mapped to.
|
java.lang.String |
getDescription() |
int |
getEnd() |
java.util.List<FullBEDFeature.Exon> |
getExons() |
java.lang.String |
getLink() |
java.lang.String |
getName() |
float |
getScore() |
int |
getStart() |
Strand |
getStrand() |
java.lang.String |
getType() |
void |
setChr(java.lang.String chr) |
void |
setColor(java.awt.Color color) |
void |
setDescription(java.lang.String description) |
void |
setEnd(int end) |
void |
setLink(java.lang.String link) |
void |
setName(java.lang.String name) |
void |
setScore(float score) |
void |
setStart(int start) |
void |
setStrand(Strand strand) |
void |
setType(java.lang.String type) |
protected java.lang.String chr
protected int start
protected int end
protected Strand strand
public SimpleBEDFeature(int start, int end, java.lang.String chr)
public java.lang.String getContig()
Locatable
public int getStart()
public int getEnd()
public Strand getStrand()
getStrand
in interface BEDFeature
public void setStrand(Strand strand)
public void setChr(java.lang.String chr)
public void setStart(int start)
public void setEnd(int end)
public java.lang.String getType()
getType
in interface BEDFeature
public void setType(java.lang.String type)
public java.awt.Color getColor()
getColor
in interface BEDFeature
public void setColor(java.awt.Color color)
public java.lang.String getDescription()
getDescription
in interface BEDFeature
public void setDescription(java.lang.String description)
public java.lang.String getName()
getName
in interface BEDFeature
public void setName(java.lang.String name)
public float getScore()
getScore
in interface BEDFeature
public void setScore(float score)
public java.lang.String getLink()
getLink
in interface BEDFeature
public void setLink(java.lang.String link)
public java.util.List<FullBEDFeature.Exon> getExons()
getExons
in interface BEDFeature