Enum Constant and Description |
---|
DUPLICATE_READ |
FIRST_OF_PAIR |
MATE_REVERSE_STRAND |
MATE_UNMAPPED |
NOT_PRIMARY_ALIGNMENT
Deprecated.
use
SECONDARY_ALIGNMENT instead. |
PROPER_PAIR |
READ_FAILS_VENDOR_QUALITY_CHECK |
READ_PAIRED |
READ_REVERSE_STRAND |
READ_UNMAPPED |
SECOND_OF_PAIR |
SECONDARY_ALIGNMENT |
SUPPLEMENTARY_ALIGNMENT |
Modifier and Type | Method and Description |
---|---|
static SAMFlag |
findByName(java.lang.String flag) |
java.lang.String |
getDescription() |
static java.util.Set<SAMFlag> |
getFlags(int flag) |
java.lang.String |
getLabel() |
int |
intValue() |
boolean |
isSet(int flag) |
boolean |
isUnset(int flag) |
static SAMFlag |
valueOf(int flag) |
static SAMFlag |
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static SAMFlag[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final SAMFlag READ_PAIRED
public static final SAMFlag PROPER_PAIR
public static final SAMFlag READ_UNMAPPED
public static final SAMFlag MATE_UNMAPPED
public static final SAMFlag READ_REVERSE_STRAND
public static final SAMFlag MATE_REVERSE_STRAND
public static final SAMFlag FIRST_OF_PAIR
public static final SAMFlag SECOND_OF_PAIR
public static final SAMFlag SECONDARY_ALIGNMENT
@Deprecated public static final SAMFlag NOT_PRIMARY_ALIGNMENT
SECONDARY_ALIGNMENT
instead.public static final SAMFlag READ_FAILS_VENDOR_QUALITY_CHECK
public static final SAMFlag DUPLICATE_READ
public static final SAMFlag SUPPLEMENTARY_ALIGNMENT
public static SAMFlag[] values()
for (SAMFlag c : SAMFlag.values()) System.out.println(c);
public static SAMFlag valueOf(java.lang.String name)
name
- the name of the enum constant to be returned.java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is nullpublic int intValue()
public java.lang.String getLabel()
public java.lang.String getDescription()
public static SAMFlag valueOf(int flag)
public static SAMFlag findByName(java.lang.String flag)
public boolean isSet(int flag)
public boolean isUnset(int flag)
public static java.util.Set<SAMFlag> getFlags(int flag)