public class TabixUtils
extends java.lang.Object
Modifier and Type | Class and Description |
---|---|
static class |
TabixUtils.TIndex |
static class |
TabixUtils.TIntv |
static class |
TabixUtils.TPair64 |
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
STANDARD_INDEX_EXTENSION
Deprecated.
Use since June 2019
FileExtensions.TABIX_INDEX instead. |
Constructor and Description |
---|
TabixUtils() |
Modifier and Type | Method and Description |
---|---|
static SAMSequenceDictionary |
getSequenceDictionary(java.io.File tabixIndex)
Generates the SAMSequenceDictionary from the given tabix index file
|
static boolean |
less64(long u,
long v) |
@Deprecated public static final java.lang.String STANDARD_INDEX_EXTENSION
FileExtensions.TABIX_INDEX
instead.public static boolean less64(long u, long v)
public static SAMSequenceDictionary getSequenceDictionary(java.io.File tabixIndex)
tabixIndex
- the tabix index file