Class VCFDecoderV4_2
java.lang.Object
htsjdk.beta.codecs.variants.vcf.VCFDecoder
htsjdk.beta.codecs.variants.vcf.vcfv4_2.VCFDecoderV4_2
- All Implemented Interfaces:
HtsDecoder<VCFHeader,
,VariantContext> HtsQuery<VariantContext>
,VariantsDecoder
,Closeable
,AutoCloseable
,Iterable<VariantContext>
VCF V4.2 decoder.
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Constructor Summary
ConstructorDescriptionVCFDecoderV4_2
(Bundle inputBundle, VariantsDecoderOptions variantsDecoderOptions) Create a new VCF V4.2 decoder. -
Method Summary
Modifier and TypeMethodDescriptionGet the version of the file format supported by this decoder.Methods inherited from class htsjdk.beta.codecs.variants.vcf.VCFDecoder
close, getDisplayName, getFileFormat, getHeader, getInputBundle, getReadsDecoderOptions, hasIndex, isQueryable, iterator, query, query, queryStart
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery
query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping
Methods inherited from interface java.lang.Iterable
forEach, spliterator
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Constructor Details
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VCFDecoderV4_2
Create a new VCF V4.2 decoder.- Parameters:
inputBundle
- the inputBundle
to decodevariantsDecoderOptions
- theVariantsDecoderOptions
for this decoder
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Method Details
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getVersion
Description copied from interface:HtsDecoder
Get the version of the file format supported by this decoder.
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