Package htsjdk.beta.plugin.variants
Interface VariantsDecoder
- All Superinterfaces:
AutoCloseable
,Closeable
,HtsDecoder<VCFHeader,
,VariantContext> HtsQuery<VariantContext>
,Iterable<VariantContext>
- All Known Implementing Classes:
VCFDecoder
,VCFDecoderV3_2
,VCFDecoderV3_3
,VCFDecoderV4_0
,VCFDecoderV4_1
,VCFDecoderV4_2
,VCFDecoderV4_3
Base class for all
HtsContentType.VARIANT_CONTEXTS
decoders.-
Method Summary
Methods inherited from interface htsjdk.beta.plugin.HtsDecoder
close, getDisplayName, getFileFormat, getHeader, getVersion
Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery
hasIndex, isQueryable, iterator, query, query, query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping, queryStart
Methods inherited from interface java.lang.Iterable
forEach, spliterator