Package htsjdk.samtools

Class BinWithOffset

java.lang.Object

htsjdk.samtools.Bin

htsjdk.samtools.BinWithOffset

All Implemented Interfaces:

Comparable<Bin>

public class BinWithOffset
extends Bin

An individual bin of a CSI index for BAM files. Extends the BAI index bin Bin with a 64 bit value, representing the virtual file offset of the first overlapping record.

Constructor Summary

Constructors

Constructor	Description
BinWithOffset(int referenceSequence, int binNumber, long lOffset)

Method Summary

Modifier and Type	Method	Description
long	getlOffset()

Methods inherited from class htsjdk.samtools.Bin

addChunk, addInitialChunk, compareTo, containsChunks, equals, getBinNumber, getChunkList, getLastChunk, getReferenceSequence, hashCode, setChunkList, setLastChunk

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BinWithOffset

public BinWithOffset(int referenceSequence,
 int binNumber,
 long lOffset)

Method Details

getlOffset

public long getlOffset()