Package htsjdk.samtools

Class SAMBinaryTagAndUnsignedArrayValue

java.lang.Object

htsjdk.samtools.SAMBinaryTagAndValue

htsjdk.samtools.SAMBinaryTagAndUnsignedArrayValue

All Implemented Interfaces:

Serializable

public class SAMBinaryTagAndUnsignedArrayValue
extends SAMBinaryTagAndValue

Simple extension to SAMBinaryTagAndValue in order to distinguish unsigned array values, because signedness cannot be determined by introspection of value. Must be array of byte, short, or int.

See Also:

• Serialized Form

Field Summary

Fields inherited from class htsjdk.samtools.SAMBinaryTagAndValue

next, serialVersionUID, tag, value

Constructor Summary

Constructors

Constructor	Description
SAMBinaryTagAndUnsignedArrayValue(short tag, Object value)

Method Summary

Modifier and Type	Method	Description
SAMBinaryTagAndValue	copy()	Creates and returns a shallow copy of the list of tag/values.
SAMBinaryTagAndValue	deepCopy()	Creates and returns a deep copy of the list of tag/values.
boolean	isUnsignedArray()

Methods inherited from class htsjdk.samtools.SAMBinaryTagAndValue

cloneValue, equals, find, getNext, hashCode, insert, isAllowedAttributeValue, remove

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SAMBinaryTagAndUnsignedArrayValue

public SAMBinaryTagAndUnsignedArrayValue(short tag,
 Object value)

Method Details

copy

public SAMBinaryTagAndValue copy()

Creates and returns a shallow copy of the list of tag/values.

Overrides:

copy in class SAMBinaryTagAndValue

deepCopy

public SAMBinaryTagAndValue deepCopy()

Creates and returns a deep copy of the list of tag/values.

Overrides:

deepCopy in class SAMBinaryTagAndValue

isUnsignedArray

public boolean isUnsignedArray()

Overrides:

isUnsignedArray in class SAMBinaryTagAndValue