Package htsjdk.samtools

Class SRAIterator.RecordRangeInfo

java.lang.Object

htsjdk.samtools.SRAIterator.RecordRangeInfo

Enclosing class:

SRAIterator

public static class SRAIterator.RecordRangeInfo
extends Object

Describes record ranges info needed for emulating BAM index

Constructor Summary

Constructors

Constructor	Description
RecordRangeInfo(List<Long> referenceLengthsAligned, long numberOfReads)

Method Summary

Modifier and Type	Method	Description
long	getNumberOfReads()
final List<Long>	getReferenceLengthsAligned()
final List<Long>	getReferenceOffsets()
long	getTotalRecordRangeLength()
long	getTotalReferencesLength()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RecordRangeInfo

public RecordRangeInfo(List<Long> referenceLengthsAligned,
 long numberOfReads)

Parameters:

referenceLengthsAligned - a list with lengths of each reference

numberOfReads - total number of reads within SRA archive

Method Details

getNumberOfReads

public long getNumberOfReads()

getTotalReferencesLength

public long getTotalReferencesLength()

getTotalRecordRangeLength

public long getTotalRecordRangeLength()

getReferenceOffsets

public final List<Long> getReferenceOffsets()

getReferenceLengthsAligned

public final List<Long> getReferenceLengthsAligned()