Class GolombLongEncoding
java.lang.Object
htsjdk.samtools.cram.encoding.CRAMEncoding<T>
htsjdk.samtools.cram.encoding.core.experimental.GolombLongEncoding
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionbuildCodec
(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams) Instantiate the codec represented by this encoding by supplying it with the appropriate streamsstatic GolombLongEncoding
fromSerializedEncodingParams
(byte[] serializedParams) Create a new instance of this encoding using the (ITF8 encoded) serializedParams.byte[]
Serialize encoding parameters to an ITF8-encoded byte array.toString()
Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding
buildReadCodec, buildWriteCodec, id, toEncodingDescriptor
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Constructor Details
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GolombLongEncoding
public GolombLongEncoding(int offset, int m)
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Method Details
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fromSerializedEncodingParams
Create a new instance of this encoding using the (ITF8 encoded) serializedParams.- Parameters:
serializedParams
-- Returns:
- GolombLongEncoding with parameters populated from serializedParams
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toSerializedEncodingParams
public byte[] toSerializedEncodingParams()Description copied from class:CRAMEncoding
Serialize encoding parameters to an ITF8-encoded byte array. By convention, each subclass should have a corresponding and symmetric "fromSerializedEncodingParams" that returns a new instance of that encoding populated with values from the serialized encoding params.- Specified by:
toSerializedEncodingParams
in classCRAMEncoding<Long>
- Returns:
- a byte array containing the encoding's parameter values encoded as an ITF8 stream.
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buildCodec
public CRAMCodec<Long> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams) Description copied from class:CRAMEncoding
Instantiate the codec represented by this encoding by supplying it with the appropriate streams- Specified by:
buildCodec
in classCRAMEncoding<Long>
- Parameters:
sliceBlocksReadStreams
- the core block bit stream aCoreCodec
will read fromsliceBlocksWriteStreams
- the core block bit stream aCoreCodec
will write to- Returns:
- a newly instantiated codec
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toString
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