Package htsjdk.samtools.filter

Class FilteringIterator

java.lang.Object

htsjdk.samtools.filter.FilteringSamIterator

htsjdk.samtools.filter.FilteringIterator

All Implemented Interfaces:

CloseableIterator<SAMRecord>, Closeable, AutoCloseable, Iterator<SAMRecord>

@Deprecated
public class FilteringIterator
extends FilteringSamIterator

Deprecated.

use FilteringSamIterator instead

Filtering Iterator which takes a filter and an iterator and iterates through only those records which are not rejected by the filter.

$Id$

Constructor Summary

Constructors

Constructor	Description
FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter)	Deprecated.
FilteringIterator(Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair)	Deprecated.

Method Summary

Methods inherited from class htsjdk.samtools.filter.FilteringSamIterator

close, hasNext, next, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

stream, toList

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Details

FilteringIterator

public FilteringIterator(Iterator<SAMRecord> iterator,
 SamRecordFilter filter,
 boolean filterByPair)

Deprecated.

FilteringIterator

public FilteringIterator(Iterator<SAMRecord> iterator,
 SamRecordFilter filter)

Deprecated.