Package htsjdk.samtools.filter
Class SecondaryOrSupplementaryFilter
java.lang.Object
htsjdk.samtools.filter.SecondaryOrSupplementaryFilter
- All Implemented Interfaces:
SamRecordFilter
Filter out SAMRecords with Secondary or Supplementary flag set
This class should be viewed as a replacement for
NotPrimarySkippingIterator
,
in that we did not want to change the functionality of NPSI to no longer match its name
$Id$-
Constructor Summary
Constructors -
Method Summary
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Constructor Details
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SecondaryOrSupplementaryFilter
public SecondaryOrSupplementaryFilter()
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Method Details
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filterOut
Description copied from interface:SamRecordFilter
Determines whether a SAMRecord matches this filter- Specified by:
filterOut
in interfaceSamRecordFilter
- Parameters:
record
- the SAMRecord to evaluate- Returns:
- true if the SAMRecord matches the filter, otherwise false
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filterOut
Determines whether a pair of SAMRecord matches this filter- Specified by:
filterOut
in interfaceSamRecordFilter
- Parameters:
first
- the first SAMRecord to evaluatesecond
- the second SAMRecord to evaluate- Returns:
- true if the SAMRecords matches the filter, otherwise false
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