Package htsjdk.samtools.util

Class IntervalTree.Node<V1>

java.lang.Object

htsjdk.samtools.util.IntervalTree.Node<V1>

Enclosing class:

IntervalTree<V>

public static class IntervalTree.Node<V1>
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static final int	HAS_GREATER_PART
static final int	HAS_LESSER_PART
static final int	HAS_OVERLAPPING_PART
static final int	IS_ADJACENT_AND_EMPTY
static final int	IS_LEFT_OVERHANGING_OVERLAPPER
static final int	IS_RIGHT_OVERHANGING_OVERLAPPER
static final int	IS_STRICTLY_GREATER
static final int	IS_STRICTLY_LESS
static final int	IS_SUBSET
static final int	IS_SUPERSET

Method Summary

Modifier and Type	Method	Description
void	checkMaxEnd()
int	getEnd()
int	getLength()
int	getRelationship(IntervalTree.Node<V1> interval)
int	getStart()
V1	getValue()
boolean	isAdjacent(IntervalTree.Node<V1> interval)
void	printNode()
V1	setValue(V1 value)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

HAS_LESSER_PART

public static final int HAS_LESSER_PART

See Also:

• Constant Field Values

HAS_OVERLAPPING_PART

public static final int HAS_OVERLAPPING_PART

See Also:

• Constant Field Values

HAS_GREATER_PART

public static final int HAS_GREATER_PART

See Also:

• Constant Field Values

IS_ADJACENT_AND_EMPTY

public static final int IS_ADJACENT_AND_EMPTY

See Also:

• Constant Field Values

IS_STRICTLY_LESS

public static final int IS_STRICTLY_LESS

See Also:

• Constant Field Values

IS_SUBSET

public static final int IS_SUBSET

See Also:

• Constant Field Values

IS_LEFT_OVERHANGING_OVERLAPPER

public static final int IS_LEFT_OVERHANGING_OVERLAPPER

See Also:

• Constant Field Values

IS_STRICTLY_GREATER

public static final int IS_STRICTLY_GREATER

See Also:

• Constant Field Values

IS_RIGHT_OVERHANGING_OVERLAPPER

public static final int IS_RIGHT_OVERHANGING_OVERLAPPER

See Also:

• Constant Field Values

IS_SUPERSET

public static final int IS_SUPERSET

See Also:

• Constant Field Values

Method Details

getStart

public int getStart()

getEnd

public int getEnd()

getLength

public int getLength()

getRelationship

public int getRelationship(IntervalTree.Node<V1> interval)

isAdjacent

public boolean isAdjacent(IntervalTree.Node<V1> interval)

getValue

public V1 getValue()

setValue

public V1 setValue(V1 value)

checkMaxEnd

public void checkMaxEnd()

printNode

public void printNode()

toString

public String toString()

Overrides:

toString in class Object