BCF2FieldWriter.GenericSiteWriter (htsjdk 4.2.0 API)

java.lang.Object

htsjdk.variant.variantcontext.writer.BCF2FieldWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.SiteWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenericSiteWriter

Enclosing class:: BCF2FieldWriter

public static class BCF2FieldWriter.GenericSiteWriter extends BCF2FieldWriter.SiteWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
Constructor Summary

Constructors

Constructor

Description

GenericSiteWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
Method Summary

Modifier and Type

Method

Description

void

site(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, start, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- GenericSiteWriter
  
  public GenericSiteWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
Method Details
- site
  
  public void site(BCF2Encoder encoder, VariantContext vc) throws IOException
  
  Specified by:
  
  site in class BCF2FieldWriter.SiteWriter
  
  Throws:
  
  IOException