com.hfg.bio.seq.format.feature.genbank

Class GenBankFeatureQualifierName

java.lang.Object

com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName

public class GenBankFeatureQualifierName
extends java.lang.Object

DDBJ/EMBL/GenBank feature table qualifiers for flat-file records.

See http://www.insdc.org/documents/feature-table

Field Summary

Fields

Modifier and Type	Field and Description
static GenBankFeatureQualifierName	allele
static GenBankFeatureQualifierName	altitude
static GenBankFeatureQualifierName	anticodon
static GenBankFeatureQualifierName	artificial
static GenBankFeatureQualifierName	artificial_location
static GenBankFeatureQualifierName	bio_material
static GenBankFeatureQualifierName	bound_moiety
static GenBankFeatureQualifierName	breed
static GenBankFeatureQualifierName	cell_line
static GenBankFeatureQualifierName	cell_type
static GenBankFeatureQualifierName	chromosome
static GenBankFeatureQualifierName	citation
static GenBankFeatureQualifierName	clone
static GenBankFeatureQualifierName	clone_lib
static GenBankFeatureQualifierName	codon_start
static GenBankFeatureQualifierName	collected_by
static GenBankFeatureQualifierName	collection_date
static GenBankFeatureQualifierName	compare
static GenBankFeatureQualifierName	country
static GenBankFeatureQualifierName	cultivar
static GenBankFeatureQualifierName	culture_collection
static GenBankFeatureQualifierName	db_xref
static GenBankFeatureQualifierName	dev_stage
static GenBankFeatureQualifierName	direction
static GenBankFeatureQualifierName	EC_number
static GenBankFeatureQualifierName	ecotype
static GenBankFeatureQualifierName	environmental_sample
static GenBankFeatureQualifierName	estimated_length
static GenBankFeatureQualifierName	exception
static GenBankFeatureQualifierName	experiment
static GenBankFeatureQualifierName	focus
static GenBankFeatureQualifierName	frequency
static GenBankFeatureQualifierName	function
static GenBankFeatureQualifierName	gap_type
static GenBankFeatureQualifierName	gene
static GenBankFeatureQualifierName	gene_synonym
static GenBankFeatureQualifierName	germline
static GenBankFeatureQualifierName	haplogroup
static GenBankFeatureQualifierName	haplotype
static GenBankFeatureQualifierName	host
static GenBankFeatureQualifierName	identified_by
static GenBankFeatureQualifierName	inference
static GenBankFeatureQualifierName	isolate
static GenBankFeatureQualifierName	isolation_source
static GenBankFeatureQualifierName	lab_host
static GenBankFeatureQualifierName	lat_lon
static GenBankFeatureQualifierName	linkage_evidence
static GenBankFeatureQualifierName	locus_tag
static GenBankFeatureQualifierName	macronuclear
static GenBankFeatureQualifierName	map
static GenBankFeatureQualifierName	mating_type
static GenBankFeatureQualifierName	mobile_element_type
static GenBankFeatureQualifierName	mod_base
static GenBankFeatureQualifierName	mol_type
static GenBankFeatureQualifierName	ncRNA_class
static GenBankFeatureQualifierName	note
static GenBankFeatureQualifierName	number
static GenBankFeatureQualifierName	old_locus_tag
static GenBankFeatureQualifierName	operon
static GenBankFeatureQualifierName	organelle
static GenBankFeatureQualifierName	organism
static GenBankFeatureQualifierName	PCR_conditions
static GenBankFeatureQualifierName	PCR_primers
static GenBankFeatureQualifierName	phenotype
static GenBankFeatureQualifierName	plasmid
static GenBankFeatureQualifierName	pop_variant
static GenBankFeatureQualifierName	product
static GenBankFeatureQualifierName	protein_id
static GenBankFeatureQualifierName	proviral
static GenBankFeatureQualifierName	pseudo
static GenBankFeatureQualifierName	pseudogene
static GenBankFeatureQualifierName	rearranged
static GenBankFeatureQualifierName	regulatory_class
static GenBankFeatureQualifierName	replace
static GenBankFeatureQualifierName	ribosomal_slippage
static GenBankFeatureQualifierName	rpt_family
static GenBankFeatureQualifierName	rpt_type
static GenBankFeatureQualifierName	rpt_unit_range
static GenBankFeatureQualifierName	rpt_unit_seq
static GenBankFeatureQualifierName	satellite
static GenBankFeatureQualifierName	segment
static GenBankFeatureQualifierName	serotype
static GenBankFeatureQualifierName	serovar
static GenBankFeatureQualifierName	sex
static GenBankFeatureQualifierName	specimen_voucher
static GenBankFeatureQualifierName	standard_name
static GenBankFeatureQualifierName	strain
static GenBankFeatureQualifierName	sub_clone
static GenBankFeatureQualifierName	sub_species
static GenBankFeatureQualifierName	sub_strain
static GenBankFeatureQualifierName	tag_peptide
static GenBankFeatureQualifierName	tissue_lib
static GenBankFeatureQualifierName	tissue_type
static GenBankFeatureQualifierName	trans_splicing
static GenBankFeatureQualifierName	transcript_id
static GenBankFeatureQualifierName	transgenic
static GenBankFeatureQualifierName	transl_except
static GenBankFeatureQualifierName	transl_table
static GenBankFeatureQualifierName	translation
static GenBankFeatureQualifierName	type_material
static GenBankFeatureQualifierName	variety

Method Summary

Modifier and Type	Method and Description
java.lang.String	name()
java.lang.String	toString()
static GenBankFeatureQualifierName	valueOf(java.lang.String inValue)
static java.util.Collection<GenBankFeatureQualifierName>	values()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

allele

public static final GenBankFeatureQualifierName allele

altitude

public static final GenBankFeatureQualifierName altitude

anticodon

public static final GenBankFeatureQualifierName anticodon

artificial

public static final GenBankFeatureQualifierName artificial

artificial_location

public static final GenBankFeatureQualifierName artificial_location

bio_material

public static final GenBankFeatureQualifierName bio_material

bound_moiety

public static final GenBankFeatureQualifierName bound_moiety

breed

public static final GenBankFeatureQualifierName breed

cell_line

public static final GenBankFeatureQualifierName cell_line

cell_type

public static final GenBankFeatureQualifierName cell_type

chromosome

public static final GenBankFeatureQualifierName chromosome

citation

public static final GenBankFeatureQualifierName citation

clone

public static final GenBankFeatureQualifierName clone

clone_lib

public static final GenBankFeatureQualifierName clone_lib

codon_start

public static final GenBankFeatureQualifierName codon_start

collected_by

public static final GenBankFeatureQualifierName collected_by

collection_date

public static final GenBankFeatureQualifierName collection_date

compare

public static final GenBankFeatureQualifierName compare

country

public static final GenBankFeatureQualifierName country

cultivar

public static final GenBankFeatureQualifierName cultivar

culture_collection

public static final GenBankFeatureQualifierName culture_collection

db_xref

public static final GenBankFeatureQualifierName db_xref

dev_stage

public static final GenBankFeatureQualifierName dev_stage

direction

public static final GenBankFeatureQualifierName direction

EC_number

public static final GenBankFeatureQualifierName EC_number

ecotype

public static final GenBankFeatureQualifierName ecotype

environmental_sample

public static final GenBankFeatureQualifierName environmental_sample

estimated_length

public static final GenBankFeatureQualifierName estimated_length

exception

public static final GenBankFeatureQualifierName exception

experiment

public static final GenBankFeatureQualifierName experiment

focus

public static final GenBankFeatureQualifierName focus

frequency

public static final GenBankFeatureQualifierName frequency

function

public static final GenBankFeatureQualifierName function

gap_type

public static final GenBankFeatureQualifierName gap_type

gene

public static final GenBankFeatureQualifierName gene

gene_synonym

public static final GenBankFeatureQualifierName gene_synonym

germline

public static final GenBankFeatureQualifierName germline

haplogroup

public static final GenBankFeatureQualifierName haplogroup

haplotype

public static final GenBankFeatureQualifierName haplotype

host

public static final GenBankFeatureQualifierName host

identified_by

public static final GenBankFeatureQualifierName identified_by

inference

public static final GenBankFeatureQualifierName inference

isolate

public static final GenBankFeatureQualifierName isolate

isolation_source

public static final GenBankFeatureQualifierName isolation_source

lab_host

public static final GenBankFeatureQualifierName lab_host

lat_lon

public static final GenBankFeatureQualifierName lat_lon

linkage_evidence

public static final GenBankFeatureQualifierName linkage_evidence

locus_tag

public static final GenBankFeatureQualifierName locus_tag

macronuclear

public static final GenBankFeatureQualifierName macronuclear

map

public static final GenBankFeatureQualifierName map

mating_type

public static final GenBankFeatureQualifierName mating_type

mobile_element_type

public static final GenBankFeatureQualifierName mobile_element_type

mod_base

public static final GenBankFeatureQualifierName mod_base

mol_type

public static final GenBankFeatureQualifierName mol_type

ncRNA_class

public static final GenBankFeatureQualifierName ncRNA_class

note

public static final GenBankFeatureQualifierName note

number

public static final GenBankFeatureQualifierName number

old_locus_tag

public static final GenBankFeatureQualifierName old_locus_tag

operon

public static final GenBankFeatureQualifierName operon

organelle

public static final GenBankFeatureQualifierName organelle

organism

public static final GenBankFeatureQualifierName organism

PCR_conditions

public static final GenBankFeatureQualifierName PCR_conditions

PCR_primers

public static final GenBankFeatureQualifierName PCR_primers

phenotype

public static final GenBankFeatureQualifierName phenotype

plasmid

public static final GenBankFeatureQualifierName plasmid

pop_variant

public static final GenBankFeatureQualifierName pop_variant

product

public static final GenBankFeatureQualifierName product

protein_id

public static final GenBankFeatureQualifierName protein_id

proviral

public static final GenBankFeatureQualifierName proviral

pseudo

public static final GenBankFeatureQualifierName pseudo

pseudogene

public static final GenBankFeatureQualifierName pseudogene

rearranged

public static final GenBankFeatureQualifierName rearranged

regulatory_class

public static final GenBankFeatureQualifierName regulatory_class

replace

public static final GenBankFeatureQualifierName replace

ribosomal_slippage

public static final GenBankFeatureQualifierName ribosomal_slippage

rpt_family

public static final GenBankFeatureQualifierName rpt_family

rpt_type

public static final GenBankFeatureQualifierName rpt_type

rpt_unit_range

public static final GenBankFeatureQualifierName rpt_unit_range

rpt_unit_seq

public static final GenBankFeatureQualifierName rpt_unit_seq

satellite

public static final GenBankFeatureQualifierName satellite

segment

public static final GenBankFeatureQualifierName segment

serotype

public static final GenBankFeatureQualifierName serotype

serovar

public static final GenBankFeatureQualifierName serovar

sex

public static final GenBankFeatureQualifierName sex

specimen_voucher

public static final GenBankFeatureQualifierName specimen_voucher

standard_name

public static final GenBankFeatureQualifierName standard_name

strain

public static final GenBankFeatureQualifierName strain

sub_clone

public static final GenBankFeatureQualifierName sub_clone

sub_species

public static final GenBankFeatureQualifierName sub_species

sub_strain

public static final GenBankFeatureQualifierName sub_strain

tag_peptide

public static final GenBankFeatureQualifierName tag_peptide

tissue_lib

public static final GenBankFeatureQualifierName tissue_lib

tissue_type

public static final GenBankFeatureQualifierName tissue_type

transcript_id

public static final GenBankFeatureQualifierName transcript_id

transgenic

public static final GenBankFeatureQualifierName transgenic

translation

public static final GenBankFeatureQualifierName translation

transl_except

public static final GenBankFeatureQualifierName transl_except

transl_table

public static final GenBankFeatureQualifierName transl_table

trans_splicing

public static final GenBankFeatureQualifierName trans_splicing

type_material

public static final GenBankFeatureQualifierName type_material

variety

public static final GenBankFeatureQualifierName variety

Method Detail

valueOf

public static GenBankFeatureQualifierName valueOf(java.lang.String inValue)

values

public static java.util.Collection<GenBankFeatureQualifierName> values()

name

public java.lang.String name()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object