com.hfg.bio.seq.format.genbank

Class GenBankKeyword

java.lang.Object

com.hfg.bio.seq.format.genbank.GenBankKeyword

public class GenBankKeyword
extends java.lang.Object

Valid keywords for the GenBank sequence format.

See ftp://ftp.ncbi.nlm.nih.gov/genbank/gbrel.txt

See http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Field Summary

Fields

Modifier and Type	Field and Description
static GenBankKeyword	ACCESSION
static GenBankKeyword	BASE_COUNT
static GenBankKeyword	COMMENT
static GenBankKeyword	CONTIG
static GenBankKeyword	DBLINK
static GenBankKeyword	DEFINITION
static GenBankKeyword	FEATURES
static GenBankKeyword	KEYWORDS
static GenBankKeyword	LOCUS
static GenBankKeyword	NID
static GenBankKeyword	ORIGIN
static GenBankKeyword	PRIMARY Observed in GenBank files but not mentioned in the documentation
static GenBankKeyword	PROJECT
static GenBankKeyword	REFERENCE
static GenBankKeyword	SEGMENT
static GenBankKeyword	SOURCE
static GenBankKeyword	VERSION

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	GenBankKeyword(java.lang.String inName)

Method Summary

Modifier and Type	Method and Description
boolean	allowsSubkeyword(GenBankSubkeyword inSubkeyword)
java.util.List<GenBankSubkeyword>	getSubkeywords()
java.lang.String	name()
java.lang.String	toString()
static GenBankKeyword	valueOf(java.lang.String inName)
static java.util.Collection<GenBankKeyword>	values()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ACCESSION

public static final GenBankKeyword ACCESSION

BASE_COUNT

public static final GenBankKeyword BASE_COUNT

COMMENT

public static final GenBankKeyword COMMENT

CONTIG

public static final GenBankKeyword CONTIG

DBLINK

public static final GenBankKeyword DBLINK

DEFINITION

public static final GenBankKeyword DEFINITION

FEATURES

public static final GenBankKeyword FEATURES

KEYWORDS

public static final GenBankKeyword KEYWORDS

LOCUS

public static final GenBankKeyword LOCUS

NID

public static final GenBankKeyword NID

ORIGIN

public static final GenBankKeyword ORIGIN

PROJECT

public static final GenBankKeyword PROJECT

REFERENCE

public static final GenBankKeyword REFERENCE

SEGMENT

public static final GenBankKeyword SEGMENT

SOURCE

public static final GenBankKeyword SOURCE

VERSION

public static final GenBankKeyword VERSION

PRIMARY

public static final GenBankKeyword PRIMARY

Observed in GenBank files but not mentioned in the documentation

Constructor Detail

GenBankKeyword

protected GenBankKeyword(java.lang.String inName)

Method Detail

valueOf

public static GenBankKeyword valueOf(java.lang.String inName)

values

public static java.util.Collection<GenBankKeyword> values()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

name

public java.lang.String name()

allowsSubkeyword

public boolean allowsSubkeyword(GenBankSubkeyword inSubkeyword)

getSubkeywords

public java.util.List<GenBankSubkeyword> getSubkeywords()