Class | Description |
---|---|
Genotype |
Representation of a genotype in an individual
Genotypes are represented by lists of integers identifying alleles from a
GenotypeCalls . |
GenotypeBuilder |
Helper class for building
Genotype objects |
GenotypeCalls |
A list of genotypes (at an implicitely assumed site) in multiple individuals
This list contains the core information for the filtration of variants by mendelian inheritance.
|
GenotypeCallsBuilder |
Helper class for building
GenotypeCalls objects |
MendelianInheritanceChecker |
Facade class for checking lists of
GenotypeCalls for compatibility with mendelian inheritance |
Enum | Description |
---|---|
ChromosomeType |
Describe the chromosome type, for use in mendelian inheritance filtering
|
ModeOfInheritance |
An enumeration of the four main Mendelian modes of inheritance for prioritizing exome data
|
Exception | Description |
---|---|
IncompatiblePedigreeException |
Thrown when the pedigree does not fit to the
GenotypeCalls |
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