public enum Genotype extends Enum<Genotype>
NOT_OBSERVED
refers to ./. in a VCF file with multiple samples means a call
cannot be made for the sample at this given locus (e.g., because there were nor reads).Enum Constant and Description |
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HETEROZYGOUS
0/1 in the VCF genotype field, heterozygous sequence.
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HOMOZYGOUS_ALT
1/1 in the VCF genotype field, homozygous alternate sequence
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HOMOZYGOUS_REF
0/0 in the VCF genotype field, homozygous reference sequence.
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NOT_OBSERVED
./. in the VCF genotype field (not observed, this is usually encoutered in multisample VCF files).
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Modifier and Type | Method and Description |
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static Genotype |
valueOf(String name)
Returns the enum constant of this type with the specified name.
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static Genotype[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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public static final Genotype HOMOZYGOUS_REF
public static final Genotype HOMOZYGOUS_ALT
public static final Genotype HETEROZYGOUS
public static final Genotype NOT_OBSERVED
public static Genotype[] values()
for (Genotype c : Genotype.values()) System.out.println(c);
public static Genotype valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullCopyright © 2016. All rights reserved.