Package de.charite.compbio.jannovar.hgvs.legacy

Class LegacyIndel

java.lang.Object

de.charite.compbio.jannovar.hgvs.legacy.LegacyChange

de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel

public class LegacyIndel
extends LegacyChange

Representation of a legacy notation substitution.

Author:

Manuel Holtgrewe

Constructor Summary

Constructors

Constructor	Description
LegacyIndel(LegacyLocation location, NucleotideSeqDescription deletedSeq, NucleotideSeqDescription insertedSeq)	Construct new legacy substitution with the given values

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
NucleotideSeqDescription	getDeletedSeq()
NucleotideSeqDescription	getInsertedSeq()
int	hashCode()
String	toLegacyString()
String	toString()

Methods inherited from class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange

getLocation

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

LegacyIndel

public LegacyIndel(LegacyLocation location,
                   NucleotideSeqDescription deletedSeq,
                   NucleotideSeqDescription insertedSeq)

Construct new legacy substitution with the given values

Method Detail

getDeletedSeq

public NucleotideSeqDescription getDeletedSeq()

Returns:

replaced sequence

getInsertedSeq

public NucleotideSeqDescription getInsertedSeq()

Returns:

sequence to replace with

toLegacyString

public String toLegacyString()

Specified by:

toLegacyString in class LegacyChange

Returns:

legacy string descrition of the change

toString

public String toString()

Overrides:

toString in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class LegacyChange

equals

public boolean equals(Object obj)

Overrides:

equals in class LegacyChange