Index (de.charite.compbio:jannovar-hgvs 0.41 API)

A B C D E F G H I L M N O P R S T U V W _
All Classes All Packages

A

AA_AA1 - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_AA1 - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_AA1() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
AA_AA1() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_AA1(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_AA3 - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_AA3 - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_AA3() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
AA_AA3() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_AA3(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
aa_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
aa_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
aa_change(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
aa_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
Aa_change_deletionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
AA_CHANGE_DESCRIPTION - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_CHANGE_DESCRIPTION - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
AA_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
AA_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
aa_change_duplication() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_duplication() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
Aa_change_duplicationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
aa_change_extension() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_extension() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
Aa_change_extensionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
aa_change_frameshift() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_frameshift() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
Aa_change_frameshiftContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
aa_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
Aa_change_indelContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
aa_change_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
Aa_change_innerContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_change_insertionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
AA_CHANGE_LINE_BREAK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_CHANGE_LINE_BREAK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_misc() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_misc() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_change_miscContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
AA_CHANGE_SPACE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_CHANGE_SPACE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_change_ssr() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_ssr() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_change_ssrContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
aa_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_change_substitutionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
aa_change_unchanged() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
aa_change_unchanged() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_change_unchangedContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
Aa_changeContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
aa_char() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
aa_char() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
aa_char() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
aa_char() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_char() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
Aa_charContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
AA_COLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_COLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_COMMA - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_COMMA - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_COMMA() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_DEL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_DEL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
AA_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
AA_DUP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_DUP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_DUP() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
AA_EQUAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_EQUAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_EQUAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
AA_EQUAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
AA_EQUAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
AA_EXT - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_EXT - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_EXT() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
AA_FS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_FS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_FS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
AA_INS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_INS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
AA_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
AA_MET - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_MET - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_MET() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
AA_MET() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_MET(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_MINUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_MINUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_MINUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
AA_MINUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
AA_MINUS(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
aa_multi_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_multi_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
Aa_multi_allele_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
aa_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
aa_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
aa_multi_change_allele(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
aa_multi_change_allele_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_multi_change_allele_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
Aa_multi_change_allele_innerContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
Aa_multi_change_alleleContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
AA_NUMBER - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_NUMBER - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
AA_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
AA_NUMBER(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
AA_NUMBER(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
AA_NUMBER(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
AA_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
AA_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
AA_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
AA_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
AA_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
AA_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
AA_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
AA_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
AA_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_PLUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_PLUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_PLUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
aa_point_location(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
Aa_point_locationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
AA_QUESTION_MARK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_QUESTION_MARK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_QUESTION_MARK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
AA_QUESTION_MARK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
AA_QUESTION_MARK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
AA_QUESTION_MARK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
aa_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Aa_rangeContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
AA_SEMICOLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_SEMICOLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_SEMICOLON() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
AA_SEMICOLON() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_SEMICOLON(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
aa_single_allele_multi_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_single_allele_multi_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
Aa_single_allele_multi_change_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
aa_single_allele_single_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_single_allele_single_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
Aa_single_allele_single_change_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
aa_single_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_single_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
Aa_single_allele_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
AA_SLASHES - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_SLASHES - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_SLASHES() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_SQUARE_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_SQUARE_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_SQUARE_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
AA_SQUARE_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_SQUARE_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_SQUARE_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
aa_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
aa_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
aa_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
aa_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
aa_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_string(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
Aa_stringContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
AA_TERMINAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_TERMINAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_TERMINAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
AA_TERMINAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
AA_TERMINAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
AA_TERMINAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
AA_UNDERSCORE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_UNDERSCORE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_UNDERSCORE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
AA_UNDERSCORE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
aa_var_sep() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
aa_var_sep() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
aa_var_sep(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
Aa_var_sepContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
AA_ZERO - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AA_ZERO - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
AA_ZERO() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
add(int, NucleotideChange) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
add(int, ProteinChange) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
add(NucleotideChange) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
add(ProteinChange) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
addAll(int, Collection<? extends NucleotideChange>) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
addAll(int, Collection<? extends ProteinChange>) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
addAll(Collection<? extends NucleotideChange>) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
addAll(Collection<? extends ProteinChange>) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
AMINO_ACID_CHANGE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
AminoAcidCode - Enum in de.charite.compbio.jannovar.hgvs: Representation of the two possible amino acid codes, 1-letter and 3-letter.
Antlr4HGVSLexer - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSLexer(CharStream) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
Antlr4HGVSParser - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser(TokenStream) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Antlr4HGVSParser.Aa_change_deletionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_duplicationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_extensionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_frameshiftContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_indelContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_innerContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_insertionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_miscContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_ssrContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_substitutionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_change_unchangedContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_changeContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_charContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_multi_allele_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_multi_change_allele_innerContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_multi_change_alleleContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_point_locationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_rangeContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_single_allele_multi_change_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_single_allele_single_change_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_single_allele_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_stringContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Aa_var_sepContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Hgvs_variantContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_change_deletionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_change_indelContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_change_insertionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_change_substitutionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_changeContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_point_locationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Legacy_variantContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_base_locationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_deletionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_duplicationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_indelContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_innerContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_insertionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_inversionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_miscContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_repeat_sequenceContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_sequenced_repeatContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_ssrContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_substitutionContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_change_unchangedContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_changeContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_multi_allele_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_multi_change_allele_innerContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_multi_change_alleleContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_numberContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_offsetContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_point_locationContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_rangeContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_single_allele_multi_change_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_single_allele_single_change_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_single_allele_varContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_stringContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.Nt_var_sepContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParser.ReferenceContext - Class in de.charite.compbio.jannovar.hgvs.parser
Antlr4HGVSParserBaseListener - Class in de.charite.compbio.jannovar.hgvs.parser: This class provides an empty implementation of Antlr4HGVSParserListener, which can be extended to create a listener which only needs to handle a subset of the available methods.
Antlr4HGVSParserBaseListener() - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener
Antlr4HGVSParserListener - Interface in de.charite.compbio.jannovar.hgvs.parser: This interface defines a complete listener for a parse tree produced by Antlr4HGVSParser.

B

build(boolean, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
build(boolean, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
build(boolean, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
build(boolean, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
build(boolean, int, String, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution: Build NucleotideSubstitution with nucleotide positions without offset values.
build(boolean, NucleotideMiscChangeType) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange: Static factory function that forwards to NucleotideMiscChange(boolean, NucleotideMiscChangeType).
build(boolean, NucleotideRange, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability: Factory forwards to NucleotideShortSequenceRepeatVariability(boolean, NucleotideRange, int, int).
build(boolean, ProteinMiscChangeType) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange: Static factory function that forwards to ProteinMiscChange(boolean, ProteinMiscChangeType).
build(boolean, ProteinPointLocation, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: Construct normal ProteinExtension
build(boolean, ProteinPointLocation, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift with full settings
build(boolean, ProteinRange, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability: Factory forwards to ProteinShortSequenceRepeatVariability(boolean, ProteinRange, int, int)
build(boolean, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution: Factory method for direct construction from source AA, position, and targetAA.
build(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: Construct normal ProteinExtension
build(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift with full settings
build(boolean, String, int, String, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability: Factory forwards to ProteinShortSequenceRepeatVariability.build(boolean, ProteinRange, int, int)
build(int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
build(int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
build(SequenceType, String, NucleotideChangeAllele...) - Static method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
build(SequenceType, String, VariantConfiguration, NucleotideChange...) - Static method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
build(VariantConfiguration, NucleotideChange...) - Static method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
build(VariantConfiguration, ProteinChange...) - Static method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
build(String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
build(String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
build(String, ProteinChangeAllele...) - Static method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
build(String, VariantConfiguration, ProteinChange...) - Static method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
buildDownstreamOfCDS(int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
buildDownstreamOfTerminal(boolean, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
buildDownstreamOfTerminal(String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
buildDownstreamOfTerminal(String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
buildExonicLocation(int, int) - Static method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation: Construct LegacyLocationType.EXONIC location
buildFromString(String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange: Build from input string.
buildIntronicLocation(int, int) - Static method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation: Construct LegacyLocationType.INTRONIC location
buildShort(boolean, ProteinPointLocation) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift short description
buildShort(boolean, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift short description
buildWithLength(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build without offset and no sequence description
buildWithLength(boolean, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithLength(boolean, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithLength(boolean, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build without offset and with length information
buildWithLength(boolean, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithLength(boolean, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithLength(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build without offset and with length information
buildWithLength(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion: Build without any sequence description.
buildWithLength(boolean, String, int, String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion with length information
buildWithLength(boolean, String, int, String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
buildWithLength(boolean, String, int, String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion: Build with length information
buildWithLength(boolean, String, int, String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion with length information
buildWithLength(boolean, String, int, String, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel: Build with length information
buildWithOffset(boolean, int, int, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithOffset(boolean, int, int, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithOffset(boolean, int, int, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithOffset(boolean, int, int, int, int, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithOffset(boolean, int, int, String, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution: Build NucleotideSubstitution with nucleotide positions with offset values.
buildWithOffset(boolean, String, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
buildWithOffset(int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
buildWithOffset(String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
buildWithOffset(String, int, int, String, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
buildWithOffsetWithLength(boolean, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithOffsetWithLength(boolean, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithOffsetWithLength(boolean, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build with length information
buildWithOffsetWithLength(boolean, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithOffsetWithLength(boolean, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithOffsetWithLength(boolean, int, int, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build with length information
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build without any sequence description
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build without any sequence description
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithOffsetWithoutSeqDescription(boolean, int, int, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithOffsetWithSeqDescription(boolean, int, int, int, int, NucleotideSeqDescription, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build with sequence description
buildWithOffsetWithSequence(boolean, int, int, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithOffsetWithSequence(boolean, int, int, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithOffsetWithSequence(boolean, int, int, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build with sequence
buildWithOffsetWithSequence(boolean, int, int, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithOffsetWithSequence(boolean, int, int, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithOffsetWithSequence(boolean, int, int, int, int, String, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build with sequence information
buildWithoutOffset(int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
buildWithoutSeqDescription(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithoutSeqDescription(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithoutSeqDescription(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build without offset and any sequence description
buildWithoutSeqDescription(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithoutSeqDescription(boolean, int, int) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithoutSeqDescription(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion without length and sequence information
buildWithoutSeqDescription(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
buildWithoutSeqDescription(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel: Build without any sequence description
buildWithoutSeqDescription(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion: Build without any SeqDescription
buildWithoutSeqDescription(boolean, String, int, String, int) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion without length and sequence information
buildWithoutTerminal(boolean, ProteinPointLocation, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: Construct ProteinExtension without a terminal in the extension
buildWithoutTerminal(boolean, ProteinPointLocation, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift for the case that there is no terminal
buildWithoutTerminal(boolean, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: Construct ProteinExtension without a terminal in the extension
buildWithoutTerminal(boolean, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Build new ProteinFrameshift for the case that there is no terminal
buildWithSeqDescription(boolean, int, int, NucleotideSeqDescription, NucleotideSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build without offset and with sequence description
buildWithSeqDescription(boolean, String, int, String, int, ProteinSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
buildWithSeqDescription(boolean, String, int, String, int, ProteinSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion: Build with SeqDescription
buildWithSeqDescription(boolean, String, int, String, int, ProteinSeqDescription, ProteinSeqDescription) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel: Build with sequence description
buildWithSequence(boolean, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
buildWithSequence(boolean, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
buildWithSequence(boolean, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion: Build without offset and with sequence
buildWithSequence(boolean, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
buildWithSequence(boolean, int, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
buildWithSequence(boolean, int, int, String, String) - Static method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel: Build without offset and with sequence information
buildWithSequence(boolean, String, int, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion with sequence
buildWithSequence(boolean, String, int, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
buildWithSequence(boolean, String, int, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion: Build with sequence
buildWithSequence(boolean, String, int, String, int, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion with sequence
buildWithSequence(boolean, String, int, String, int, String, String) - Static method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel: Build with sequence information

C

CHANGE_BRANCH - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
channelNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
CHIMERIC - de.charite.compbio.jannovar.hgvs.VariantConfiguration: chimeric change
clear() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
clear() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
CODING_DNA - de.charite.compbio.jannovar.hgvs.SequenceType: coding DNA "c."
contains(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
contains(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
containsAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
containsAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
ConvertibleToHGVSString - Interface in de.charite.compbio.jannovar.hgvs: Provide HGVS string representation of an element.

D

de.charite.compbio.jannovar.hgvs - package de.charite.compbio.jannovar.hgvs
de.charite.compbio.jannovar.hgvs.legacy - package de.charite.compbio.jannovar.hgvs.legacy
de.charite.compbio.jannovar.hgvs.nts - package de.charite.compbio.jannovar.hgvs.nts
de.charite.compbio.jannovar.hgvs.nts.change - package de.charite.compbio.jannovar.hgvs.nts.change
de.charite.compbio.jannovar.hgvs.nts.variant - package de.charite.compbio.jannovar.hgvs.nts.variant
de.charite.compbio.jannovar.hgvs.parser - package de.charite.compbio.jannovar.hgvs.parser
de.charite.compbio.jannovar.hgvs.protein - package de.charite.compbio.jannovar.hgvs.protein
de.charite.compbio.jannovar.hgvs.protein.change - package de.charite.compbio.jannovar.hgvs.protein.change
de.charite.compbio.jannovar.hgvs.protein.variant - package de.charite.compbio.jannovar.hgvs.protein.variant
DEL - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat.InDelType
DIFFICULT_TO_PREDICT - de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType: difficult to predict (?)

E

enterAa_change(Antlr4HGVSParser.Aa_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change().
enterAa_change(Antlr4HGVSParser.Aa_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change().
enterAa_change_deletion(Antlr4HGVSParser.Aa_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_deletion().
enterAa_change_deletion(Antlr4HGVSParser.Aa_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_deletion().
enterAa_change_duplication(Antlr4HGVSParser.Aa_change_duplicationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_duplication().
enterAa_change_duplication(Antlr4HGVSParser.Aa_change_duplicationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_duplication().
enterAa_change_extension(Antlr4HGVSParser.Aa_change_extensionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_extension().
enterAa_change_extension(Antlr4HGVSParser.Aa_change_extensionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_extension().
enterAa_change_frameshift(Antlr4HGVSParser.Aa_change_frameshiftContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_frameshift().
enterAa_change_frameshift(Antlr4HGVSParser.Aa_change_frameshiftContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_frameshift().
enterAa_change_indel(Antlr4HGVSParser.Aa_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_indel().
enterAa_change_indel(Antlr4HGVSParser.Aa_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_indel().
enterAa_change_inner(Antlr4HGVSParser.Aa_change_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_inner().
enterAa_change_inner(Antlr4HGVSParser.Aa_change_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_inner().
enterAa_change_insertion(Antlr4HGVSParser.Aa_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_insertion().
enterAa_change_insertion(Antlr4HGVSParser.Aa_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_insertion().
enterAa_change_misc(Antlr4HGVSParser.Aa_change_miscContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_misc().
enterAa_change_misc(Antlr4HGVSParser.Aa_change_miscContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_misc().
enterAa_change_ssr(Antlr4HGVSParser.Aa_change_ssrContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_ssr().
enterAa_change_ssr(Antlr4HGVSParser.Aa_change_ssrContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_ssr().
enterAa_change_substitution(Antlr4HGVSParser.Aa_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_substitution().
enterAa_change_substitution(Antlr4HGVSParser.Aa_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_substitution().
enterAa_change_unchanged(Antlr4HGVSParser.Aa_change_unchangedContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_unchanged().
enterAa_change_unchanged(Antlr4HGVSParser.Aa_change_unchangedContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_change_unchanged().
enterAa_char(Antlr4HGVSParser.Aa_charContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_char().
enterAa_char(Antlr4HGVSParser.Aa_charContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_char().
enterAa_multi_allele_var(Antlr4HGVSParser.Aa_multi_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_allele_var().
enterAa_multi_allele_var(Antlr4HGVSParser.Aa_multi_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_allele_var().
enterAa_multi_change_allele(Antlr4HGVSParser.Aa_multi_change_alleleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele().
enterAa_multi_change_allele(Antlr4HGVSParser.Aa_multi_change_alleleContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele().
enterAa_multi_change_allele_inner(Antlr4HGVSParser.Aa_multi_change_allele_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele_inner().
enterAa_multi_change_allele_inner(Antlr4HGVSParser.Aa_multi_change_allele_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele_inner().
enterAa_point_location(Antlr4HGVSParser.Aa_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_point_location().
enterAa_point_location(Antlr4HGVSParser.Aa_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_point_location().
enterAa_range(Antlr4HGVSParser.Aa_rangeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_range().
enterAa_range(Antlr4HGVSParser.Aa_rangeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_range().
enterAa_single_allele_multi_change_var(Antlr4HGVSParser.Aa_single_allele_multi_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_multi_change_var().
enterAa_single_allele_multi_change_var(Antlr4HGVSParser.Aa_single_allele_multi_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_multi_change_var().
enterAa_single_allele_single_change_var(Antlr4HGVSParser.Aa_single_allele_single_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_single_change_var().
enterAa_single_allele_single_change_var(Antlr4HGVSParser.Aa_single_allele_single_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_single_change_var().
enterAa_single_allele_var(Antlr4HGVSParser.Aa_single_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_var().
enterAa_single_allele_var(Antlr4HGVSParser.Aa_single_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_single_allele_var().
enterAa_string(Antlr4HGVSParser.Aa_stringContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_string().
enterAa_string(Antlr4HGVSParser.Aa_stringContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_string().
enterAa_var_sep(Antlr4HGVSParser.Aa_var_sepContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.aa_var_sep().
enterAa_var_sep(Antlr4HGVSParser.Aa_var_sepContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.aa_var_sep().
enterEveryRule(ParserRuleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener
enterHgvs_variant(Antlr4HGVSParser.Hgvs_variantContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.hgvs_variant().
enterHgvs_variant(Antlr4HGVSParser.Hgvs_variantContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.hgvs_variant().
enterLegacy_change(Antlr4HGVSParser.Legacy_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change().
enterLegacy_change(Antlr4HGVSParser.Legacy_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change().
enterLegacy_change_deletion(Antlr4HGVSParser.Legacy_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_deletion().
enterLegacy_change_deletion(Antlr4HGVSParser.Legacy_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_deletion().
enterLegacy_change_indel(Antlr4HGVSParser.Legacy_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_indel().
enterLegacy_change_indel(Antlr4HGVSParser.Legacy_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_indel().
enterLegacy_change_insertion(Antlr4HGVSParser.Legacy_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_insertion().
enterLegacy_change_insertion(Antlr4HGVSParser.Legacy_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_insertion().
enterLegacy_change_substitution(Antlr4HGVSParser.Legacy_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_substitution().
enterLegacy_change_substitution(Antlr4HGVSParser.Legacy_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_change_substitution().
enterLegacy_point_location(Antlr4HGVSParser.Legacy_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_point_location().
enterLegacy_point_location(Antlr4HGVSParser.Legacy_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_point_location().
enterLegacy_variant(Antlr4HGVSParser.Legacy_variantContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_variant().
enterLegacy_variant(Antlr4HGVSParser.Legacy_variantContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.legacy_variant().
enterNt_base_location(Antlr4HGVSParser.Nt_base_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_base_location().
enterNt_base_location(Antlr4HGVSParser.Nt_base_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_base_location().
enterNt_change(Antlr4HGVSParser.Nt_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change().
enterNt_change(Antlr4HGVSParser.Nt_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change().
enterNt_change_deletion(Antlr4HGVSParser.Nt_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_deletion().
enterNt_change_deletion(Antlr4HGVSParser.Nt_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_deletion().
enterNt_change_duplication(Antlr4HGVSParser.Nt_change_duplicationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_duplication().
enterNt_change_duplication(Antlr4HGVSParser.Nt_change_duplicationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_duplication().
enterNt_change_indel(Antlr4HGVSParser.Nt_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_indel().
enterNt_change_indel(Antlr4HGVSParser.Nt_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_indel().
enterNt_change_inner(Antlr4HGVSParser.Nt_change_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_inner().
enterNt_change_inner(Antlr4HGVSParser.Nt_change_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_inner().
enterNt_change_insertion(Antlr4HGVSParser.Nt_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_insertion().
enterNt_change_insertion(Antlr4HGVSParser.Nt_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_insertion().
enterNt_change_inversion(Antlr4HGVSParser.Nt_change_inversionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_inversion().
enterNt_change_inversion(Antlr4HGVSParser.Nt_change_inversionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_inversion().
enterNt_change_misc(Antlr4HGVSParser.Nt_change_miscContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_misc().
enterNt_change_misc(Antlr4HGVSParser.Nt_change_miscContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_misc().
enterNt_change_not_sequenced_repeat(Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_not_sequenced_repeat().
enterNt_change_not_sequenced_repeat(Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_not_sequenced_repeat().
enterNt_change_repeat_sequence(Antlr4HGVSParser.Nt_change_repeat_sequenceContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_repeat_sequence().
enterNt_change_repeat_sequence(Antlr4HGVSParser.Nt_change_repeat_sequenceContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_repeat_sequence().
enterNt_change_sequenced_repeat(Antlr4HGVSParser.Nt_change_sequenced_repeatContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_sequenced_repeat().
enterNt_change_sequenced_repeat(Antlr4HGVSParser.Nt_change_sequenced_repeatContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_sequenced_repeat().
enterNt_change_ssr(Antlr4HGVSParser.Nt_change_ssrContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_ssr().
enterNt_change_ssr(Antlr4HGVSParser.Nt_change_ssrContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_ssr().
enterNt_change_substitution(Antlr4HGVSParser.Nt_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_substitution().
enterNt_change_substitution(Antlr4HGVSParser.Nt_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_substitution().
enterNt_change_unchanged(Antlr4HGVSParser.Nt_change_unchangedContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_unchanged().
enterNt_change_unchanged(Antlr4HGVSParser.Nt_change_unchangedContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_change_unchanged().
enterNt_multi_allele_var(Antlr4HGVSParser.Nt_multi_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_allele_var().
enterNt_multi_allele_var(Antlr4HGVSParser.Nt_multi_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_allele_var().
enterNt_multi_change_allele(Antlr4HGVSParser.Nt_multi_change_alleleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele().
enterNt_multi_change_allele(Antlr4HGVSParser.Nt_multi_change_alleleContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele().
enterNt_multi_change_allele_inner(Antlr4HGVSParser.Nt_multi_change_allele_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele_inner().
enterNt_multi_change_allele_inner(Antlr4HGVSParser.Nt_multi_change_allele_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele_inner().
enterNt_number(Antlr4HGVSParser.Nt_numberContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_number().
enterNt_number(Antlr4HGVSParser.Nt_numberContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_number().
enterNt_offset(Antlr4HGVSParser.Nt_offsetContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_offset().
enterNt_offset(Antlr4HGVSParser.Nt_offsetContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_offset().
enterNt_point_location(Antlr4HGVSParser.Nt_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_point_location().
enterNt_point_location(Antlr4HGVSParser.Nt_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_point_location().
enterNt_range(Antlr4HGVSParser.Nt_rangeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_range().
enterNt_range(Antlr4HGVSParser.Nt_rangeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_range().
enterNt_single_allele_multi_change_var(Antlr4HGVSParser.Nt_single_allele_multi_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_multi_change_var().
enterNt_single_allele_multi_change_var(Antlr4HGVSParser.Nt_single_allele_multi_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_multi_change_var().
enterNt_single_allele_single_change_var(Antlr4HGVSParser.Nt_single_allele_single_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_single_change_var().
enterNt_single_allele_single_change_var(Antlr4HGVSParser.Nt_single_allele_single_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_single_change_var().
enterNt_single_allele_var(Antlr4HGVSParser.Nt_single_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_var().
enterNt_single_allele_var(Antlr4HGVSParser.Nt_single_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_single_allele_var().
enterNt_string(Antlr4HGVSParser.Nt_stringContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_string().
enterNt_string(Antlr4HGVSParser.Nt_stringContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_string().
enterNt_var_sep(Antlr4HGVSParser.Nt_var_sepContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.nt_var_sep().
enterNt_var_sep(Antlr4HGVSParser.Nt_var_sepContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.nt_var_sep().
enterReference(Antlr4HGVSParser.ReferenceContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Enter a parse tree produced by Antlr4HGVSParser.reference().
enterReference(Antlr4HGVSParser.ReferenceContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Enter a parse tree produced by Antlr4HGVSParser.reference().
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_numberContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_stringContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
enterRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
equals(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
ErrorChar - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
ErrorChar - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
exitAa_change(Antlr4HGVSParser.Aa_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change().
exitAa_change(Antlr4HGVSParser.Aa_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change().
exitAa_change_deletion(Antlr4HGVSParser.Aa_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_deletion().
exitAa_change_deletion(Antlr4HGVSParser.Aa_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_deletion().
exitAa_change_duplication(Antlr4HGVSParser.Aa_change_duplicationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_duplication().
exitAa_change_duplication(Antlr4HGVSParser.Aa_change_duplicationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_duplication().
exitAa_change_extension(Antlr4HGVSParser.Aa_change_extensionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_extension().
exitAa_change_extension(Antlr4HGVSParser.Aa_change_extensionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_extension().
exitAa_change_frameshift(Antlr4HGVSParser.Aa_change_frameshiftContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_frameshift().
exitAa_change_frameshift(Antlr4HGVSParser.Aa_change_frameshiftContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_frameshift().
exitAa_change_indel(Antlr4HGVSParser.Aa_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_indel().
exitAa_change_indel(Antlr4HGVSParser.Aa_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_indel().
exitAa_change_inner(Antlr4HGVSParser.Aa_change_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_inner().
exitAa_change_inner(Antlr4HGVSParser.Aa_change_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_inner().
exitAa_change_insertion(Antlr4HGVSParser.Aa_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_insertion().
exitAa_change_insertion(Antlr4HGVSParser.Aa_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_insertion().
exitAa_change_misc(Antlr4HGVSParser.Aa_change_miscContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_misc().
exitAa_change_misc(Antlr4HGVSParser.Aa_change_miscContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_misc().
exitAa_change_ssr(Antlr4HGVSParser.Aa_change_ssrContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_ssr().
exitAa_change_ssr(Antlr4HGVSParser.Aa_change_ssrContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_ssr().
exitAa_change_substitution(Antlr4HGVSParser.Aa_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_substitution().
exitAa_change_substitution(Antlr4HGVSParser.Aa_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_substitution().
exitAa_change_unchanged(Antlr4HGVSParser.Aa_change_unchangedContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_unchanged().
exitAa_change_unchanged(Antlr4HGVSParser.Aa_change_unchangedContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_change_unchanged().
exitAa_char(Antlr4HGVSParser.Aa_charContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_char().
exitAa_char(Antlr4HGVSParser.Aa_charContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_char().
exitAa_multi_allele_var(Antlr4HGVSParser.Aa_multi_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_allele_var().
exitAa_multi_allele_var(Antlr4HGVSParser.Aa_multi_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_allele_var().
exitAa_multi_change_allele(Antlr4HGVSParser.Aa_multi_change_alleleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele().
exitAa_multi_change_allele(Antlr4HGVSParser.Aa_multi_change_alleleContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele().
exitAa_multi_change_allele_inner(Antlr4HGVSParser.Aa_multi_change_allele_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele_inner().
exitAa_multi_change_allele_inner(Antlr4HGVSParser.Aa_multi_change_allele_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_multi_change_allele_inner().
exitAa_point_location(Antlr4HGVSParser.Aa_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_point_location().
exitAa_point_location(Antlr4HGVSParser.Aa_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_point_location().
exitAa_range(Antlr4HGVSParser.Aa_rangeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_range().
exitAa_range(Antlr4HGVSParser.Aa_rangeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_range().
exitAa_single_allele_multi_change_var(Antlr4HGVSParser.Aa_single_allele_multi_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_multi_change_var().
exitAa_single_allele_multi_change_var(Antlr4HGVSParser.Aa_single_allele_multi_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_multi_change_var().
exitAa_single_allele_single_change_var(Antlr4HGVSParser.Aa_single_allele_single_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_single_change_var().
exitAa_single_allele_single_change_var(Antlr4HGVSParser.Aa_single_allele_single_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_single_change_var().
exitAa_single_allele_var(Antlr4HGVSParser.Aa_single_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_var().
exitAa_single_allele_var(Antlr4HGVSParser.Aa_single_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_single_allele_var().
exitAa_string(Antlr4HGVSParser.Aa_stringContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_string().
exitAa_string(Antlr4HGVSParser.Aa_stringContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_string().
exitAa_var_sep(Antlr4HGVSParser.Aa_var_sepContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.aa_var_sep().
exitAa_var_sep(Antlr4HGVSParser.Aa_var_sepContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.aa_var_sep().
exitEveryRule(ParserRuleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener
exitHgvs_variant(Antlr4HGVSParser.Hgvs_variantContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.hgvs_variant().
exitHgvs_variant(Antlr4HGVSParser.Hgvs_variantContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.hgvs_variant().
exitLegacy_change(Antlr4HGVSParser.Legacy_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change().
exitLegacy_change(Antlr4HGVSParser.Legacy_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change().
exitLegacy_change_deletion(Antlr4HGVSParser.Legacy_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_deletion().
exitLegacy_change_deletion(Antlr4HGVSParser.Legacy_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_deletion().
exitLegacy_change_indel(Antlr4HGVSParser.Legacy_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_indel().
exitLegacy_change_indel(Antlr4HGVSParser.Legacy_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_indel().
exitLegacy_change_insertion(Antlr4HGVSParser.Legacy_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_insertion().
exitLegacy_change_insertion(Antlr4HGVSParser.Legacy_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_insertion().
exitLegacy_change_substitution(Antlr4HGVSParser.Legacy_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_substitution().
exitLegacy_change_substitution(Antlr4HGVSParser.Legacy_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_change_substitution().
exitLegacy_point_location(Antlr4HGVSParser.Legacy_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_point_location().
exitLegacy_point_location(Antlr4HGVSParser.Legacy_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_point_location().
exitLegacy_variant(Antlr4HGVSParser.Legacy_variantContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_variant().
exitLegacy_variant(Antlr4HGVSParser.Legacy_variantContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.legacy_variant().
exitNt_base_location(Antlr4HGVSParser.Nt_base_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_base_location().
exitNt_base_location(Antlr4HGVSParser.Nt_base_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_base_location().
exitNt_change(Antlr4HGVSParser.Nt_changeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change().
exitNt_change(Antlr4HGVSParser.Nt_changeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change().
exitNt_change_deletion(Antlr4HGVSParser.Nt_change_deletionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_deletion().
exitNt_change_deletion(Antlr4HGVSParser.Nt_change_deletionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_deletion().
exitNt_change_duplication(Antlr4HGVSParser.Nt_change_duplicationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_duplication().
exitNt_change_duplication(Antlr4HGVSParser.Nt_change_duplicationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_duplication().
exitNt_change_indel(Antlr4HGVSParser.Nt_change_indelContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_indel().
exitNt_change_indel(Antlr4HGVSParser.Nt_change_indelContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_indel().
exitNt_change_inner(Antlr4HGVSParser.Nt_change_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_inner().
exitNt_change_inner(Antlr4HGVSParser.Nt_change_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_inner().
exitNt_change_insertion(Antlr4HGVSParser.Nt_change_insertionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_insertion().
exitNt_change_insertion(Antlr4HGVSParser.Nt_change_insertionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_insertion().
exitNt_change_inversion(Antlr4HGVSParser.Nt_change_inversionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_inversion().
exitNt_change_inversion(Antlr4HGVSParser.Nt_change_inversionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_inversion().
exitNt_change_misc(Antlr4HGVSParser.Nt_change_miscContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_misc().
exitNt_change_misc(Antlr4HGVSParser.Nt_change_miscContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_misc().
exitNt_change_not_sequenced_repeat(Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_not_sequenced_repeat().
exitNt_change_not_sequenced_repeat(Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_not_sequenced_repeat().
exitNt_change_repeat_sequence(Antlr4HGVSParser.Nt_change_repeat_sequenceContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_repeat_sequence().
exitNt_change_repeat_sequence(Antlr4HGVSParser.Nt_change_repeat_sequenceContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_repeat_sequence().
exitNt_change_sequenced_repeat(Antlr4HGVSParser.Nt_change_sequenced_repeatContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_sequenced_repeat().
exitNt_change_sequenced_repeat(Antlr4HGVSParser.Nt_change_sequenced_repeatContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_sequenced_repeat().
exitNt_change_ssr(Antlr4HGVSParser.Nt_change_ssrContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_ssr().
exitNt_change_ssr(Antlr4HGVSParser.Nt_change_ssrContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_ssr().
exitNt_change_substitution(Antlr4HGVSParser.Nt_change_substitutionContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_substitution().
exitNt_change_substitution(Antlr4HGVSParser.Nt_change_substitutionContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_substitution().
exitNt_change_unchanged(Antlr4HGVSParser.Nt_change_unchangedContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_unchanged().
exitNt_change_unchanged(Antlr4HGVSParser.Nt_change_unchangedContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_change_unchanged().
exitNt_multi_allele_var(Antlr4HGVSParser.Nt_multi_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_allele_var().
exitNt_multi_allele_var(Antlr4HGVSParser.Nt_multi_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_allele_var().
exitNt_multi_change_allele(Antlr4HGVSParser.Nt_multi_change_alleleContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele().
exitNt_multi_change_allele(Antlr4HGVSParser.Nt_multi_change_alleleContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele().
exitNt_multi_change_allele_inner(Antlr4HGVSParser.Nt_multi_change_allele_innerContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele_inner().
exitNt_multi_change_allele_inner(Antlr4HGVSParser.Nt_multi_change_allele_innerContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_multi_change_allele_inner().
exitNt_number(Antlr4HGVSParser.Nt_numberContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_number().
exitNt_number(Antlr4HGVSParser.Nt_numberContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_number().
exitNt_offset(Antlr4HGVSParser.Nt_offsetContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_offset().
exitNt_offset(Antlr4HGVSParser.Nt_offsetContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_offset().
exitNt_point_location(Antlr4HGVSParser.Nt_point_locationContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_point_location().
exitNt_point_location(Antlr4HGVSParser.Nt_point_locationContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_point_location().
exitNt_range(Antlr4HGVSParser.Nt_rangeContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_range().
exitNt_range(Antlr4HGVSParser.Nt_rangeContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_range().
exitNt_single_allele_multi_change_var(Antlr4HGVSParser.Nt_single_allele_multi_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_multi_change_var().
exitNt_single_allele_multi_change_var(Antlr4HGVSParser.Nt_single_allele_multi_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_multi_change_var().
exitNt_single_allele_single_change_var(Antlr4HGVSParser.Nt_single_allele_single_change_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_single_change_var().
exitNt_single_allele_single_change_var(Antlr4HGVSParser.Nt_single_allele_single_change_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_single_change_var().
exitNt_single_allele_var(Antlr4HGVSParser.Nt_single_allele_varContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_var().
exitNt_single_allele_var(Antlr4HGVSParser.Nt_single_allele_varContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_single_allele_var().
exitNt_string(Antlr4HGVSParser.Nt_stringContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_string().
exitNt_string(Antlr4HGVSParser.Nt_stringContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_string().
exitNt_var_sep(Antlr4HGVSParser.Nt_var_sepContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.nt_var_sep().
exitNt_var_sep(Antlr4HGVSParser.Nt_var_sepContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.nt_var_sep().
exitReference(Antlr4HGVSParser.ReferenceContext) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener: Exit a parse tree produced by Antlr4HGVSParser.reference().
exitReference(Antlr4HGVSParser.ReferenceContext) - Method in interface de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserListener: Exit a parse tree produced by Antlr4HGVSParser.reference().
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_numberContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_stringContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
exitRule(ParseTreeListener) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
EXONIC - de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType: exonic locations

F

findMatchingForPrefix(String) - Static method in enum de.charite.compbio.jannovar.hgvs.SequenceType
fromString(String) - Static method in enum de.charite.compbio.jannovar.hgvs.VariantConfiguration

G

GENOMIC - de.charite.compbio.jannovar.hgvs.SequenceType: genomic "g."
get(int) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
get(int) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
getAA() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
getAllele() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
getAllele() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
getAlleles() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
getAlleles() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
getAminoAcids() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription: Get amino acid string, only available if ProteinSeqDescription.hasAminoAcids() returns true.
getATN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getATN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
getBaseOffset() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
getBasePos() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
getChange() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant
getChange() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
getChange() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
getChanges() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
getChanges() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
getChangeType() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange
getChangeType() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
getChannelNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getCopyNumber() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
getDeletedSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion
getDeletedSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
getDeletedSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion
getDelSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
getFeatureNo() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
getFirst() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
getFirstPos() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
getFromNT() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
getFromSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
getGrammarFileName() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getGrammarFileName() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
getInsertedSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
getInsSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
getLast() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
getLastPos() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
getLegacyString() - Method in enum de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType
getLocation() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange
getLocation() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
getLocationType() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
getMaxCount() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat: Gets the upper bound on the length of the repeat, inclusive.
getMaxCount() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
getMaxCount() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
getMinCount() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat: Gets the lower bound on the length of the repeat, inclusive.
getMinCount() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
getMinCount() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
getModeNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getNotSequencedRepeat() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat: Gets the repeat if it was not sequenced.
getNucleotides() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription: Get nucleotidestring, only available if NucleotideSeqDescription.hasNucleotides() returns true.
getOffset() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
getOffset() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
getPos() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
getPosition() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
getPosition() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
getPosition() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
getPrefix() - Method in enum de.charite.compbio.jannovar.hgvs.SequenceType
getProteinID() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getProteinID() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
getRange() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
getRange() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion
getRange() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
getRange() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
getRange() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged
getReference() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant
getRefID() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getRefIDWithVersion() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_deletionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_duplicationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_extensionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_frameshiftContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_indelContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_innerContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_insertionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_miscContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_ssrContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_substitutionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_change_unchangedContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_changeContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_charContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_allele_innerContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_change_alleleContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_point_locationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_rangeContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_stringContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_var_sepContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_numberContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_stringContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
getRuleIndex() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
getRuleNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getRuleNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
getSeq() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
getSeqDesc() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion
getSeqDesc() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged
getSeqType() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getSequence() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
getSequencedRepeats() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat: Gets the sequenced repeats.
getSequenceNamePrefix() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getSequenceNamePrefix() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
getSerializedATN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getSerializedATN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
getShift() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: The shift value number of extended amino acids if positive, shift into the 5' UTR in case of negative values, or ProteinExtension.LEN_NO_TER in the case that no stop codon is encountered on the transcript.
getShiftLength() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
getTargetAA() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
getTargetAA() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
getTargetAA() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
getTokenNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer: Deprecated.
getTokenNames() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser: Deprecated.
getToNT() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
getToSeq() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
getTranscriptVersion() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
getTranslator() - Static method in class de.charite.compbio.jannovar.hgvs.Translator: Factory method to get reference to Translator.
getTypeForLegacyString(String) - Static method in enum de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType
getVarConfig() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
getVarConfig() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
getVocabulary() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
getVocabulary() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser

H

hasAminoAcids() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
hashCode() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
hasNucleotides() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
hasOnlyOneChange() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
hasOnlyOneChange() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
hgvs_variant() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Hgvs_variantContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
HGVSErrorStrategy - Class in de.charite.compbio.jannovar.hgvs.parser
HGVSErrorStrategy() - Constructor for class de.charite.compbio.jannovar.hgvs.parser.HGVSErrorStrategy
HGVSLexer - Class in de.charite.compbio.jannovar.hgvs.parser: Extends the generated Antlr4HGVSLexer to bail out at the first lexing error.
HGVSLexer(CharStream) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.HGVSLexer
HGVSParser - Class in de.charite.compbio.jannovar.hgvs.parser: Driver code for parsing HGVS strings into HGVSVariant objects.
HGVSParser() - Constructor for class de.charite.compbio.jannovar.hgvs.parser.HGVSParser
HGVSParser(boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.HGVSParser
HGVSParsingException - Exception in de.charite.compbio.jannovar.hgvs.parser: Thrown in case of problems in HGVSParser.
HGVSParsingException() - Constructor for exception de.charite.compbio.jannovar.hgvs.parser.HGVSParsingException
HGVSParsingException(String) - Constructor for exception de.charite.compbio.jannovar.hgvs.parser.HGVSParsingException
HGVSParsingException(String, Throwable) - Constructor for exception de.charite.compbio.jannovar.hgvs.parser.HGVSParsingException
HGVSParsingException(Throwable) - Constructor for exception de.charite.compbio.jannovar.hgvs.parser.HGVSParsingException
HGVSVariant - Class in de.charite.compbio.jannovar.hgvs: Base class for nucleotide and protein variants.
HGVSVariant() - Constructor for class de.charite.compbio.jannovar.hgvs.HGVSVariant

I

IN_CIS - de.charite.compbio.jannovar.hgvs.VariantConfiguration: change resulting from independent changes on the same chromosome
indexOf(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
indexOf(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
INS - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat.InDelType
INTRONIC - de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType: intronic locations
INVALID_NT_COUNT - Static variable in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription: sentinel value for invalid nucleotide count
isBlank() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
isBlank() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription
isDeletion() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
isDownstreamOfCDS() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
isDownstreamOfTerminal() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
isEmpty() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
isEmpty() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
isInsertion() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
isNoTerminalExtension() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
isNoTerminalFrameshfit() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
isOnlyPredicted() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
isOnlyPredicted() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
isShort() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
iterator() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
iterator() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele

L

lastIndexOf(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
lastIndexOf(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
legacy_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
legacy_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
legacy_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
legacy_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
Legacy_change_deletionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
legacy_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
legacy_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
Legacy_change_indelContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
legacy_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
legacy_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
Legacy_change_insertionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
legacy_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
legacy_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
Legacy_change_substitutionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
Legacy_changeContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_changeContext
LEGACY_IVS_OR_EX - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
LEGACY_IVS_OR_EX - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
LEGACY_IVS_OR_EX() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
legacy_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
legacy_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
legacy_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
legacy_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
legacy_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Legacy_point_locationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
legacy_variant() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Legacy_variantContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
LegacyChange - Class in de.charite.compbio.jannovar.hgvs.legacy: Base class for legacy changes.
LegacyChange(LegacyLocation) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange: Initialize members with the given parameters
LegacyChangeParser - Class in de.charite.compbio.jannovar.hgvs.parser: Parser for legacy change syntax (starting with "IVS", "EX", or "E").
LegacyChangeParser() - Constructor for class de.charite.compbio.jannovar.hgvs.parser.LegacyChangeParser
LegacyChangeParser(boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.LegacyChangeParser
LegacyDeletion - Class in de.charite.compbio.jannovar.hgvs.legacy: Representation of a legacy notation deletion.
LegacyDeletion(LegacyLocation, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion: Construct new legacy deletion with the given values
LegacyIndel - Class in de.charite.compbio.jannovar.hgvs.legacy: Representation of a legacy notation substitution.
LegacyIndel(LegacyLocation, NucleotideSeqDescription, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel: Construct new legacy substitution with the given values
LegacyInsertion - Class in de.charite.compbio.jannovar.hgvs.legacy: Representation of a legacy notation insertion.
LegacyInsertion(LegacyLocation, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion: Construct new legacy substitution with the given values
LegacyLocation - Class in de.charite.compbio.jannovar.hgvs.legacy: Exonic location for legacy variants, e.g.
LegacyLocation(LegacyLocationType, int, int) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation: Initialize object with the given values
LegacyLocationType - Enum in de.charite.compbio.jannovar.hgvs.legacy: Enum describing either intronic or exonic locations.
LegacySubstitution - Class in de.charite.compbio.jannovar.hgvs.legacy: Representation of a legacy notation substitution.
LegacySubstitution(LegacyLocation, String, String) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution: Construct new legacy substitution with the given values
LegacyVariant - Class in de.charite.compbio.jannovar.hgvs.legacy: Representation of a LegacyChange on a reference sequence.
LegacyVariant(String, LegacyChange) - Constructor for class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant: Initialize object with the given values
LEN_NO_TER - Static variable in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: no terminal is encountered
LEN_NO_TER - Static variable in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: no terminal is encountered
LEN_SHORT - Static variable in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: short change description
length() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
length() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
length() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription
LINE_BREAKS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
LINE_BREAKS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
listIterator() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
listIterator() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
listIterator(int) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
listIterator(int) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele

M

makeSingleChangeVariant(SequenceType, String, NucleotideChange) - Static method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
makeSingleChangeVariant(String, ProteinChange) - Static method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
MITOCHONDRIAL_DNA - de.charite.compbio.jannovar.hgvs.SequenceType: mitochondrial DNA "m."
modeNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
MOSAIC - de.charite.compbio.jannovar.hgvs.VariantConfiguration: mosaic change
MultiAlleleNucleotideVariant - Class in de.charite.compbio.jannovar.hgvs.nts.variant: Nucleotide variant having multiple alleles.
MultiAlleleNucleotideVariant(SequenceType, String, String, int, Collection<NucleotideChangeAllele>) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant: Construct with the given SequenceType, reference/transcript ID, protein ID, transcript version, and collection of NucleotideChangeAlleles.
MultiAlleleNucleotideVariant(SequenceType, String, Collection<NucleotideChangeAllele>) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant: Construct with the given SequenceType, reference/transcript ID and collection of NucleotideChangeAlleles.
MultiAlleleProteinVariant - Class in de.charite.compbio.jannovar.hgvs.protein.variant: Protein variant having multiple alleles.
MultiAlleleProteinVariant(String, Collection<ProteinChangeAllele>) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant: Construct with the given protein ID and collection of ProteinChangeAlleles.

N

NO_CHANGE - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: no change (=)
NO_CHANGE - de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType: no change (=)
NO_PROTEIN - de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType: no protein is produced
NO_PROTEIN_ISOFORM - Static variable in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
NO_RNA - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: no RNA is produced (0)
NO_TRANSCRIPT_VERSION - Static variable in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
NON_CODING_DNA - de.charite.compbio.jannovar.hgvs.SequenceType: non-coding DNA "n."
notSequencedRepeat - Variable in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
NT_ASTERISK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_ASTERISK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_ASTERISK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
nt_base_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_base_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
Nt_base_locationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
nt_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
nt_change() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
nt_change(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
nt_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_deletion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
Nt_change_deletionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
NT_CHANGE_DESCRIPTION - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_CHANGE_DESCRIPTION - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
NT_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
NT_CHANGE_DESCRIPTION() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
nt_change_duplication() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_duplication() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
Nt_change_duplicationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
nt_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_indel() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
Nt_change_indelContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
nt_change_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
Nt_change_innerContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_insertion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_insertionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
nt_change_inversion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_inversion() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_inversionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
NT_CHANGE_LINE_BREAK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_CHANGE_LINE_BREAK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_misc() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_misc() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_miscContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
nt_change_not_sequenced_repeat() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_not_sequenced_repeat() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_not_sequenced_repeatContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
nt_change_repeat_sequence() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_repeat_sequence() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
nt_change_repeat_sequence(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
Nt_change_repeat_sequenceContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
nt_change_sequenced_repeat() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_sequenced_repeat() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_sequenced_repeatContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
NT_CHANGE_SPACE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_CHANGE_SPACE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_change_ssr() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_ssr() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_ssrContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
nt_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_substitution() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_substitutionContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
nt_change_unchanged() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_innerContext
nt_change_unchanged() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_change_unchangedContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
Nt_changeContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
NT_COMMA - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_COMMA - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_COMMA() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_DEL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_DEL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
NT_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
NT_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
NT_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
NT_DEL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_DUP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_DUP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_DUP() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
NT_EQUAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_EQUAL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_EQUAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
NT_EQUAL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
NT_GT - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_GT - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_GT() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
NT_GT() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
NT_INS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_INS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
NT_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
NT_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
NT_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
NT_INS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_INV - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_INV - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_INV() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
NT_MINUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_MINUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_MINUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
NT_MINUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
NT_MINUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
nt_multi_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
nt_multi_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_multi_allele_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
nt_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
nt_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_multi_change_allele() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
nt_multi_change_allele(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
nt_multi_change_allele_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_multi_change_allele_inner() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
Nt_multi_change_allele_innerContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
Nt_multi_change_alleleContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_base_locationContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_number() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
nt_number(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
nt_number(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
nt_number(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
NT_NUMBER - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_NUMBER - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
NT_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
NT_NUMBER() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_numberContext
NT_NUMBER(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_NUMBER(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
Nt_numberContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_numberContext
nt_offset() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_offset() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
Nt_offsetContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
NT_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
NT_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_changeContext
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
NT_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_PLUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_PLUS - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_PLUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_point_locationContext
NT_PLUS() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_offsetContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_point_location() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
nt_point_location(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
Nt_point_locationContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_point_locationContext
NT_QUESTION_MARK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_QUESTION_MARK - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_QUESTION_MARK() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_sequenced_repeatContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
nt_range() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_rangeContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
NT_SEMICOLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_SEMICOLON - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_SEMICOLON() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
NT_SEMICOLON() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_SEMICOLON(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
nt_single_allele_multi_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_single_allele_multi_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
Nt_single_allele_multi_change_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
nt_single_allele_single_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_single_allele_single_change_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
Nt_single_allele_single_change_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
nt_single_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Hgvs_variantContext
nt_single_allele_var() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
Nt_single_allele_varContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_varContext
NT_SLASHES - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_SLASHES - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_SLASHES() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_SPL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_SPL - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_SPL() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
NT_SQUARE_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_SQUARE_PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_SQUARE_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
NT_SQUARE_PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
NT_SQUARE_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_SQUARE_PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_SQUARE_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
NT_SQUARE_PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_alleleContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_deletionContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_insertionContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_deletionContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_duplicationContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_insertionContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_inversionContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_unchangedContext
nt_string() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_string(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_indelContext
nt_string(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_indelContext
NT_STRING - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_STRING - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_STRING() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
NT_STRING() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_repeat_sequenceContext
NT_STRING() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
NT_STRING() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_stringContext
NT_STRING(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_change_substitutionContext
NT_STRING(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_substitutionContext
Nt_stringContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_stringContext
NT_UNDERSCORE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_UNDERSCORE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_UNDERSCORE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
NT_UNDERSCORE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_ssrContext
NT_UNDERSCORE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_rangeContext
nt_var_sep() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
nt_var_sep() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
nt_var_sep(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_change_allele_innerContext
Nt_var_sepContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_var_sepContext
NT_ZERO - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NT_ZERO - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
NT_ZERO() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_change_miscContext
NUCLEOTIDE_CHANGE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
NucleotideChange - Class in de.charite.compbio.jannovar.hgvs.nts.change: Base class for nucleotide changes.
NucleotideChange(boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
NucleotideChangeAllele - Class in de.charite.compbio.jannovar.hgvs.nts.variant: Contains the NucleotideChanges on one allee.
NucleotideChangeAllele(VariantConfiguration, Collection<? extends NucleotideChange>) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Construct allele with the given a variant VariantConfiguration and NucleotideChanges.
NucleotideDeletion - Class in de.charite.compbio.jannovar.hgvs.nts.change: Deletion in a nucleotide sequence.
NucleotideDeletion(boolean, NucleotideRange, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
NucleotideDuplication - Class in de.charite.compbio.jannovar.hgvs.nts.change: Representation of a duplication on the nucleotide level.
NucleotideDuplication(boolean, NucleotideRange, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
NucleotideIndel - Class in de.charite.compbio.jannovar.hgvs.nts.change
NucleotideIndel(boolean, NucleotideRange, NucleotideSeqDescription, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
NucleotideInsertion - Class in de.charite.compbio.jannovar.hgvs.nts.change: Insertion into a Nucleotide sequence.
NucleotideInsertion(boolean, NucleotideRange, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
NucleotideInversion - Class in de.charite.compbio.jannovar.hgvs.nts.change
NucleotideInversion(boolean, NucleotideRange, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
NucleotideMiscChange - Class in de.charite.compbio.jannovar.hgvs.nts.change: Represents a silent protein-level change, i.e., "p.=".
NucleotideMiscChange(boolean, NucleotideMiscChangeType) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange: Construct with given changeType and onlyPredicted flag.
NucleotideMiscChangeType - Enum in de.charite.compbio.jannovar.hgvs.nts.change: Enumeration of the miscellaneous nucleotide change types (for RNA).
NucleotideNotSequencedRepeat - Class in de.charite.compbio.jannovar.hgvs.nts.change: A repeat that is not completely sequenced (i.e.
NucleotideNotSequencedRepeat(boolean, NucleotideRange, NucleotideNotSequencedRepeat.InDelType, int, int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
NucleotideNotSequencedRepeat.InDelType - Enum in de.charite.compbio.jannovar.hgvs.nts.change
NucleotidePointLocation - Class in de.charite.compbio.jannovar.hgvs.nts: Position in a nucleotide string.
NucleotidePointLocation(int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation: Deprecated.
NucleotidePointLocation(int, int, boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation: Construct with given base position and offset
NucleotideRange - Class in de.charite.compbio.jannovar.hgvs.nts: Range in a nucleotide sequence.
NucleotideRange(NucleotidePointLocation, NucleotidePointLocation) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
NucleotideRepeatSequence - Class in de.charite.compbio.jannovar.hgvs.nts.change: A repeated sequence.
NucleotideRepeatSequence(String, int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
NucleotideSeqDescription - Class in de.charite.compbio.jannovar.hgvs.nts: Specification for a nucleotide sequence, e.g.
NucleotideSeqDescription() - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription: Construct as reporting the empty string.
NucleotideSeqDescription(int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription: Construct with nucleotide string length and null string.
NucleotideSeqDescription(String) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription: Construct with nucleotide string length.
NucleotideSequencedRepeat - Class in de.charite.compbio.jannovar.hgvs.nts.change: A repeat that has been sequenced.
NucleotideSequencedRepeat(boolean, NucleotideRange, List<NucleotideRepeatSequence>) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
NucleotideShortSequenceRepeatVariability - Class in de.charite.compbio.jannovar.hgvs.nts.change
NucleotideShortSequenceRepeatVariability(boolean, NucleotideRange, int, int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability: Construct with the given values
NucleotideSubstitution - Class in de.charite.compbio.jannovar.hgvs.nts.change: Substitution of one nucleotide.
NucleotideSubstitution(boolean, NucleotidePointLocation, String, String) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution: Construct with the given values
NucleotideUnchanged - Class in de.charite.compbio.jannovar.hgvs.nts.change: Unchanged in a nucleotide sequence.
NucleotideUnchanged(boolean, NucleotideRange, NucleotideSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
NucleotideVariant - Class in de.charite.compbio.jannovar.hgvs.nts.variant: Base class for nucleotide changes.
NucleotideVariant(SequenceType, String) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant: Set variant's reference ID, protein ID is null, version is NucleotideVariant.NO_TRANSCRIPT_VERSION
NucleotideVariant(SequenceType, String, String, int) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant: Set variant's reference ID, protein ID, and protein version to the given value

O

ONE_LETTER - de.charite.compbio.jannovar.hgvs.AminoAcidCode

P

PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
PAREN_CLOSE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
PAREN_CLOSE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
PAREN_OPEN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
PAREN_OPEN() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
parseHGVSString(String) - Method in class de.charite.compbio.jannovar.hgvs.parser.HGVSParser: Parse HGVS change string
parseLegacyChangeString(String) - Method in class de.charite.compbio.jannovar.hgvs.parser.LegacyChangeParser: Parse legacy change
PROTEIN - de.charite.compbio.jannovar.hgvs.SequenceType: protein "p."
ProteinChange - Class in de.charite.compbio.jannovar.hgvs.protein.change: Base class for protein changes.
ProteinChange(boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
ProteinChangeAllele - Class in de.charite.compbio.jannovar.hgvs.protein.variant: Contains the ProteinChanges on one allee.
ProteinChangeAllele(VariantConfiguration, Collection<? extends ProteinChange>) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Construct allele with the given a variant VariantConfiguration and ProteinChanges.
ProteinDeletion - Class in de.charite.compbio.jannovar.hgvs.protein.change: In-frame deletion of a protein (i.e., without frameshift, but can destroy codons).
ProteinDeletion(boolean, ProteinRange) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion without length and sequence information
ProteinDeletion(boolean, ProteinRange, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion with length information
ProteinDeletion(boolean, ProteinRange, String) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion: Construct ProteinDeletion with sequence information
ProteinDuplication - Class in de.charite.compbio.jannovar.hgvs.protein.change
ProteinDuplication(boolean, ProteinRange, ProteinSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
ProteinExtension - Class in de.charite.compbio.jannovar.hgvs.protein.change
ProteinExtension(boolean, ProteinPointLocation, String, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension: Construct ProteinExtension with the given values
ProteinFrameshift - Class in de.charite.compbio.jannovar.hgvs.protein.change: Protein frame shift change.
ProteinFrameshift(boolean, ProteinPointLocation, String, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift: Construct ProteinFrameshift with the given values
ProteinIndel - Class in de.charite.compbio.jannovar.hgvs.protein.change: In-frame substitution on the protein level with more than one base.
ProteinIndel(boolean, ProteinRange, ProteinSeqDescription, ProteinSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
ProteinInsertion - Class in de.charite.compbio.jannovar.hgvs.protein.change: Insertion into a protein sequence.
ProteinInsertion(boolean, ProteinRange, ProteinSeqDescription) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
ProteinMiscChange - Class in de.charite.compbio.jannovar.hgvs.protein.change: Represents a silent protein-level change, i.e., "p.=".
ProteinMiscChange(boolean, ProteinMiscChangeType) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange: Construct with given changeType and onlyPredicted flag.
ProteinMiscChangeType - Enum in de.charite.compbio.jannovar.hgvs.protein.change: Enum with for the miscellaneous protein changes.
ProteinPointLocation - Class in de.charite.compbio.jannovar.hgvs.protein: Represent one position in a protein.
ProteinPointLocation(String, int, int, boolean) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
ProteinRange - Class in de.charite.compbio.jannovar.hgvs.protein: Represent a range in a protein.
ProteinRange(ProteinPointLocation, ProteinPointLocation) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
ProteinSeqDescription - Class in de.charite.compbio.jannovar.hgvs.protein: Specification for inserted protein sequence, e.g.
ProteinSeqDescription() - Constructor for class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription: Construct as reporting the empty string.
ProteinSeqDescription(int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription: Construct with amino acid string length and null string.
ProteinSeqDescription(String) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription: Construct with amino acid string length.
ProteinShortSequenceRepeatVariability - Class in de.charite.compbio.jannovar.hgvs.protein.change: Describes short sequence repeat (SSR) variability.
ProteinShortSequenceRepeatVariability(boolean, ProteinRange, int, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability: Construct with the given values
ProteinSubstitution - Class in de.charite.compbio.jannovar.hgvs.protein.change: Represents a missense protein substitution, for example "Trp2Ala" or "T2A".
ProteinSubstitution(boolean, ProteinPointLocation, String) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
ProteinUnchanged - Class in de.charite.compbio.jannovar.hgvs.protein.change: Unchanged mark inside protein.
ProteinUnchanged(boolean, ProteinRange) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion without length and sequence information
ProteinUnchanged(boolean, ProteinRange, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion with length information
ProteinUnchanged(boolean, ProteinRange, String) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged: Construct ProteinDeletion with sequence information
ProteinVariant - Class in de.charite.compbio.jannovar.hgvs.protein.variant: Base class for protein changes.
ProteinVariant(String) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant: Set variant's reference ID, protein ID is null, isoform is ProteinVariant.NO_PROTEIN_ISOFORM.
ProteinVariant(String, String, int) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant: Set variant's reference ID, protein ID, and protein isoform to the given value

R

recover(LexerNoViableAltException) - Method in class de.charite.compbio.jannovar.hgvs.parser.HGVSLexer
REF_STOP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
REF_STOP - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
REF_STOP() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_multi_allele_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Aa_single_allele_single_change_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Legacy_variantContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_multi_allele_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.Nt_single_allele_single_change_varContext
reference() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
REFERENCE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
REFERENCE - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
REFERENCE() - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
REFERENCE(int) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
ReferenceContext(ParserRuleContext, int) - Constructor for class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser.ReferenceContext
remove(int) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
remove(int) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
remove(Object) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
remove(Object) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
removeAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
removeAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
retainAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
retainAll(Collection<?>) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
RNA - de.charite.compbio.jannovar.hgvs.SequenceType: RNA "r."
RULE_aa_change - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_deletion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_duplication - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_extension - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_frameshift - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_indel - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_inner - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_insertion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_misc - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_ssr - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_substitution - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_change_unchanged - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_char - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_multi_allele_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_multi_change_allele - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_multi_change_allele_inner - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_point_location - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_range - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_single_allele_multi_change_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_single_allele_single_change_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_single_allele_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_string - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_aa_var_sep - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_hgvs_variant - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_change - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_change_deletion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_change_indel - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_change_insertion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_change_substitution - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_point_location - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_legacy_variant - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_base_location - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_deletion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_duplication - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_indel - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_inner - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_insertion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_inversion - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_misc - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_not_sequenced_repeat - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_repeat_sequence - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_sequenced_repeat - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_ssr - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_substitution - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_change_unchanged - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_multi_allele_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_multi_change_allele - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_multi_change_allele_inner - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_number - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_offset - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_point_location - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_range - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_single_allele_multi_change_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_single_allele_single_change_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_single_allele_var - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_string - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_nt_var_sep - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
RULE_reference - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
ruleNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
ruleNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser

S

SAME_AS_DNA - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: same RNA change as on DNA level ((?))
sequencedRepeats - Variable in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
SequenceType - Enum in de.charite.compbio.jannovar.hgvs: Type of the sequence that the variant is on.
set(int, NucleotideChange) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele: Deprecated.
set(int, ProteinChange) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele: Deprecated.
SINGLE_ORIGIN - de.charite.compbio.jannovar.hgvs.VariantConfiguration: change resulting from one nucleotide change
SingleAlleleNucleotideVariant - Class in de.charite.compbio.jannovar.hgvs.nts.variant: Nucleotide change with one allele only.
SingleAlleleNucleotideVariant(SequenceType, String, NucleotideChangeAllele) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant: Construct SingleAlleleNucleotideVariant
SingleAlleleNucleotideVariant(SequenceType, String, VariantConfiguration, Collection<? extends NucleotideChange>) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant: Construct SingleAlleleNucleotideVariant
SingleAlleleNucleotideVariant(SequenceType, String, String, int, NucleotideChangeAllele) - Constructor for class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant: Construct SingleAlleleNucleotideVariant
SingleAlleleProteinVariant - Class in de.charite.compbio.jannovar.hgvs.protein.variant: Protein change with one allele only.
SingleAlleleProteinVariant(String, VariantConfiguration, Collection<? extends ProteinChange>) - Constructor for class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant: Construct SingleAlleleProteinVariant
singleChangeAllele(NucleotideChange) - Static method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
singleChangeAllele(ProteinChange) - Static method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
size() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
size() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
SPLICING_AFFECTED - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: splicing is expected to be affected (spl?)
subList(int, int) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
subList(int, int) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele

T

THREE_LETTER - de.charite.compbio.jannovar.hgvs.AminoAcidCode
toArray() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
toArray() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
toArray(T[]) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
toArray(T[]) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
toHGVSSeparator() - Method in enum de.charite.compbio.jannovar.hgvs.VariantConfiguration
toHGVSString() - Method in interface de.charite.compbio.jannovar.hgvs.ConvertibleToHGVSString: Return HGVS representation in three-letter amino acid code.
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.SingleAlleleNucleotideVariant
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
toHGVSString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
toHGVSString(boolean) - Method in enum de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType
toHGVSString(boolean) - Method in enum de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType
toHGVSString(AminoAcidCode) - Method in interface de.charite.compbio.jannovar.hgvs.ConvertibleToHGVSString: Return HGVS representation using the given amino acid code.
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinSeqDescription
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
toHGVSString(AminoAcidCode) - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
tokenNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer: Deprecated.
Use Antlr4HGVSLexer.VOCABULARY instead.
tokenNames - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser: Deprecated.
Use Antlr4HGVSParser.VOCABULARY instead.
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyChange
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
toLegacyString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant: Return human readable legacy HGVS notation
toLong(char) - Method in class de.charite.compbio.jannovar.hgvs.Translator
toLong(String) - Method in class de.charite.compbio.jannovar.hgvs.Translator
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyDeletion
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyIndel
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyInsertion
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyLocation
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacySubstitution
toString() - Method in class de.charite.compbio.jannovar.hgvs.legacy.LegacyVariant
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotidePointLocation
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideRange
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.MultiAlleleNucleotideVariant
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
toString() - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideVariant
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinPointLocation
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.ProteinRange
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinChangeAllele
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
toString() - Method in class de.charite.compbio.jannovar.hgvs.protein.variant.SingleAlleleProteinVariant
translateDNA(String) - Method in class de.charite.compbio.jannovar.hgvs.Translator: Translates a DNA sequence.
translateDNA3(String) - Method in class de.charite.compbio.jannovar.hgvs.Translator
Translator - Class in de.charite.compbio.jannovar.hgvs: This singleton class helps to translate DNA sequences.

U

UNKNOWN_CIS_TRANS - de.charite.compbio.jannovar.hgvs.VariantConfiguration: it is unknown whether the protein change is on the same or different alleles
UNKNOWN_EFFECT - de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: unknown effect (?)

V

valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.AminoAcidCode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat.InDelType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.SequenceType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.charite.compbio.jannovar.hgvs.VariantConfiguration: Returns the enum constant of this type with the specified name.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.AminoAcidCode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.legacy.LegacyLocationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat.InDelType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChangeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.SequenceType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.charite.compbio.jannovar.hgvs.VariantConfiguration: Returns an array containing the constants of this enum type, in the order they are declared.
VariantConfiguration - Enum in de.charite.compbio.jannovar.hgvs: Variant configuration of changes in the same gene.
visitErrorNode(ErrorNode) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener
visitTerminal(TerminalNode) - Method in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParserBaseListener
VOCABULARY - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
VOCABULARY - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser

W

withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDeletion
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideDuplication
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideIndel
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInsertion
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideInversion
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChange
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideNotSequencedRepeat
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSequencedRepeat
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideSubstitution
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideUnchanged
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.nts.variant.NucleotideChangeAllele
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinChange
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDeletion
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinDuplication
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinExtension
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinFrameshift
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinIndel
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinInsertion
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinMiscChange
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinShortSequenceRepeatVariability
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinSubstitution
withOnlyPredicted(boolean) - Method in class de.charite.compbio.jannovar.hgvs.protein.change.ProteinUnchanged

_

_ATN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
_ATN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser
_serializedATN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer
_serializedATN - Static variable in class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser

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