Package de.charite.compbio.jannovar.hgvs.nts.change

Class NucleotideShortSequenceRepeatVariability

java.lang.Object

de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange

de.charite.compbio.jannovar.hgvs.nts.change.NucleotideShortSequenceRepeatVariability

All Implemented Interfaces:

ConvertibleToHGVSString

public class NucleotideShortSequenceRepeatVariability
extends NucleotideChange

Constructor Summary

Constructors

Constructor	Description
NucleotideShortSequenceRepeatVariability(boolean onlyPredicted, NucleotideRange range, int minCount, int maxCount)	Construct with the given values

Method Summary

Modifier and Type	Method	Description
static NucleotideShortSequenceRepeatVariability	build(boolean onlyPredicted, NucleotideRange range, int minCount, int maxCount)	Factory forwards to NucleotideShortSequenceRepeatVariability(boolean, NucleotideRange, int, int).
boolean	equals(Object obj)
int	getMaxCount()
int	getMinCount()
NucleotideRange	getRange()
int	hashCode()
String	toHGVSString()	Return HGVS representation in three-letter amino acid code.
String	toString()
NucleotideShortSequenceRepeatVariability	withOnlyPredicted(boolean flag)

Methods inherited from class de.charite.compbio.jannovar.hgvs.nts.change.NucleotideChange

isOnlyPredicted, toHGVSString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

NucleotideShortSequenceRepeatVariability

public NucleotideShortSequenceRepeatVariability(boolean onlyPredicted,
                                                NucleotideRange range,
                                                int minCount,
                                                int maxCount)

Construct with the given values

Method Detail

build

public static NucleotideShortSequenceRepeatVariability build(boolean onlyPredicted,
                                                             NucleotideRange range,
                                                             int minCount,
                                                             int maxCount)

Factory forwards to NucleotideShortSequenceRepeatVariability(boolean, NucleotideRange, int, int).

withOnlyPredicted

public NucleotideShortSequenceRepeatVariability withOnlyPredicted(boolean flag)

Specified by:

withOnlyPredicted in class NucleotideChange

Returns:

NucleotideChange with given onlyPredicted value.

getRange

public NucleotideRange getRange()

Returns:

range of repeat

getMinCount

public int getMinCount()

Returns:

lower bound on count, inclusive

getMaxCount

public int getMaxCount()

Returns:

upper bound on count, inclusive

toHGVSString

public String toHGVSString()

Description copied from interface: ConvertibleToHGVSString

Return HGVS representation in three-letter amino acid code.

Returns:

HGVS representation, e.g. "133L" for an ProteinPointLocation

toString

public String toString()

Overrides:

toString in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class NucleotideChange

equals

public boolean equals(Object obj)

Overrides:

equals in class NucleotideChange