Class HGVSParser
- java.lang.Object
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- de.charite.compbio.jannovar.hgvs.parser.HGVSParser
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public class HGVSParser extends Object
Driver code for parsing HGVS strings into HGVSVariant objects.- Author:
- Manuel Holtgrewe
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Constructor Summary
Constructors Constructor Description HGVSParser()
HGVSParser(boolean debug)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description HGVSVariant
parseHGVSString(String inputString)
Parse HGVS change string
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Method Detail
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parseHGVSString
public HGVSVariant parseHGVSString(String inputString)
Parse HGVS change string- Parameters:
inputString
- with the legacy mutation to parse- Returns:
LegacyVariant
representinginputString
- Throws:
HGVSParsingException
- if the parsing failed (note that this is an unchecked Exception)
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