Package de.charite.compbio.jannovar.hgvs.parser

Class Antlr4HGVSParser

java.lang.Object

org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

org.antlr.v4.runtime.Parser

de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSParser

public class Antlr4HGVSParser
extends org.antlr.v4.runtime.Parser

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Antlr4HGVSParser.Aa_change_deletionContext
static class	Antlr4HGVSParser.Aa_change_duplicationContext
static class	Antlr4HGVSParser.Aa_change_extensionContext
static class	Antlr4HGVSParser.Aa_change_frameshiftContext
static class	Antlr4HGVSParser.Aa_change_indelContext
static class	Antlr4HGVSParser.Aa_change_innerContext
static class	Antlr4HGVSParser.Aa_change_insertionContext
static class	Antlr4HGVSParser.Aa_change_miscContext
static class	Antlr4HGVSParser.Aa_change_ssrContext
static class	Antlr4HGVSParser.Aa_change_substitutionContext
static class	Antlr4HGVSParser.Aa_change_unchangedContext
static class	Antlr4HGVSParser.Aa_changeContext
static class	Antlr4HGVSParser.Aa_charContext
static class	Antlr4HGVSParser.Aa_multi_allele_varContext
static class	Antlr4HGVSParser.Aa_multi_change_allele_innerContext
static class	Antlr4HGVSParser.Aa_multi_change_alleleContext
static class	Antlr4HGVSParser.Aa_point_locationContext
static class	Antlr4HGVSParser.Aa_rangeContext
static class	Antlr4HGVSParser.Aa_single_allele_multi_change_varContext
static class	Antlr4HGVSParser.Aa_single_allele_single_change_varContext
static class	Antlr4HGVSParser.Aa_single_allele_varContext
static class	Antlr4HGVSParser.Aa_stringContext
static class	Antlr4HGVSParser.Aa_var_sepContext
static class	Antlr4HGVSParser.Hgvs_variantContext
static class	Antlr4HGVSParser.Legacy_change_deletionContext
static class	Antlr4HGVSParser.Legacy_change_indelContext
static class	Antlr4HGVSParser.Legacy_change_insertionContext
static class	Antlr4HGVSParser.Legacy_change_substitutionContext
static class	Antlr4HGVSParser.Legacy_changeContext
static class	Antlr4HGVSParser.Legacy_point_locationContext
static class	Antlr4HGVSParser.Legacy_variantContext
static class	Antlr4HGVSParser.Nt_base_locationContext
static class	Antlr4HGVSParser.Nt_change_deletionContext
static class	Antlr4HGVSParser.Nt_change_duplicationContext
static class	Antlr4HGVSParser.Nt_change_indelContext
static class	Antlr4HGVSParser.Nt_change_innerContext
static class	Antlr4HGVSParser.Nt_change_insertionContext
static class	Antlr4HGVSParser.Nt_change_inversionContext
static class	Antlr4HGVSParser.Nt_change_miscContext
static class	Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext
static class	Antlr4HGVSParser.Nt_change_repeat_sequenceContext
static class	Antlr4HGVSParser.Nt_change_sequenced_repeatContext
static class	Antlr4HGVSParser.Nt_change_ssrContext
static class	Antlr4HGVSParser.Nt_change_substitutionContext
static class	Antlr4HGVSParser.Nt_change_unchangedContext
static class	Antlr4HGVSParser.Nt_changeContext
static class	Antlr4HGVSParser.Nt_multi_allele_varContext
static class	Antlr4HGVSParser.Nt_multi_change_allele_innerContext
static class	Antlr4HGVSParser.Nt_multi_change_alleleContext
static class	Antlr4HGVSParser.Nt_numberContext
static class	Antlr4HGVSParser.Nt_offsetContext
static class	Antlr4HGVSParser.Nt_point_locationContext
static class	Antlr4HGVSParser.Nt_rangeContext
static class	Antlr4HGVSParser.Nt_single_allele_multi_change_varContext
static class	Antlr4HGVSParser.Nt_single_allele_single_change_varContext
static class	Antlr4HGVSParser.Nt_single_allele_varContext
static class	Antlr4HGVSParser.Nt_stringContext
static class	Antlr4HGVSParser.Nt_var_sepContext
static class	Antlr4HGVSParser.ReferenceContext

Nested classes/interfaces inherited from class org.antlr.v4.runtime.Parser

org.antlr.v4.runtime.Parser.TraceListener, org.antlr.v4.runtime.Parser.TrimToSizeListener

Field Summary

Fields

Modifier and Type	Field	Description
static org.antlr.v4.runtime.atn.ATN	_ATN
static String	_serializedATN
static int	AA_AA1
static int	AA_AA3
static int	AA_CHANGE_DESCRIPTION
static int	AA_CHANGE_LINE_BREAK
static int	AA_CHANGE_SPACE
static int	AA_COLON
static int	AA_COMMA
static int	AA_DEL
static int	AA_DUP
static int	AA_EQUAL
static int	AA_EXT
static int	AA_FS
static int	AA_INS
static int	AA_MET
static int	AA_MINUS
static int	AA_NUMBER
static int	AA_PAREN_CLOSE
static int	AA_PAREN_OPEN
static int	AA_PLUS
static int	AA_QUESTION_MARK
static int	AA_SEMICOLON
static int	AA_SLASHES
static int	AA_SQUARE_PAREN_CLOSE
static int	AA_SQUARE_PAREN_OPEN
static int	AA_TERMINAL
static int	AA_UNDERSCORE
static int	AA_ZERO
static int	ErrorChar
static int	LEGACY_IVS_OR_EX
static int	LINE_BREAKS
static int	NT_ASTERISK
static int	NT_CHANGE_DESCRIPTION
static int	NT_CHANGE_LINE_BREAK
static int	NT_CHANGE_SPACE
static int	NT_COMMA
static int	NT_DEL
static int	NT_DUP
static int	NT_EQUAL
static int	NT_GT
static int	NT_INS
static int	NT_INV
static int	NT_MINUS
static int	NT_NUMBER
static int	NT_PAREN_CLOSE
static int	NT_PAREN_OPEN
static int	NT_PLUS
static int	NT_QUESTION_MARK
static int	NT_SEMICOLON
static int	NT_SLASHES
static int	NT_SPL
static int	NT_SQUARE_PAREN_CLOSE
static int	NT_SQUARE_PAREN_OPEN
static int	NT_STRING
static int	NT_UNDERSCORE
static int	NT_ZERO
static int	PAREN_CLOSE
static int	PAREN_OPEN
static int	REF_STOP
static int	REFERENCE
static int	RULE_aa_change
static int	RULE_aa_change_deletion
static int	RULE_aa_change_duplication
static int	RULE_aa_change_extension
static int	RULE_aa_change_frameshift
static int	RULE_aa_change_indel
static int	RULE_aa_change_inner
static int	RULE_aa_change_insertion
static int	RULE_aa_change_misc
static int	RULE_aa_change_ssr
static int	RULE_aa_change_substitution
static int	RULE_aa_change_unchanged
static int	RULE_aa_char
static int	RULE_aa_multi_allele_var
static int	RULE_aa_multi_change_allele
static int	RULE_aa_multi_change_allele_inner
static int	RULE_aa_point_location
static int	RULE_aa_range
static int	RULE_aa_single_allele_multi_change_var
static int	RULE_aa_single_allele_single_change_var
static int	RULE_aa_single_allele_var
static int	RULE_aa_string
static int	RULE_aa_var_sep
static int	RULE_hgvs_variant
static int	RULE_legacy_change
static int	RULE_legacy_change_deletion
static int	RULE_legacy_change_indel
static int	RULE_legacy_change_insertion
static int	RULE_legacy_change_substitution
static int	RULE_legacy_point_location
static int	RULE_legacy_variant
static int	RULE_nt_base_location
static int	RULE_nt_change
static int	RULE_nt_change_deletion
static int	RULE_nt_change_duplication
static int	RULE_nt_change_indel
static int	RULE_nt_change_inner
static int	RULE_nt_change_insertion
static int	RULE_nt_change_inversion
static int	RULE_nt_change_misc
static int	RULE_nt_change_not_sequenced_repeat
static int	RULE_nt_change_repeat_sequence
static int	RULE_nt_change_sequenced_repeat
static int	RULE_nt_change_ssr
static int	RULE_nt_change_substitution
static int	RULE_nt_change_unchanged
static int	RULE_nt_multi_allele_var
static int	RULE_nt_multi_change_allele
static int	RULE_nt_multi_change_allele_inner
static int	RULE_nt_number
static int	RULE_nt_offset
static int	RULE_nt_point_location
static int	RULE_nt_range
static int	RULE_nt_single_allele_multi_change_var
static int	RULE_nt_single_allele_single_change_var
static int	RULE_nt_single_allele_var
static int	RULE_nt_string
static int	RULE_nt_var_sep
static int	RULE_reference
static String[]	ruleNames
static String[]	tokenNames	Deprecated. Use VOCABULARY instead.
static org.antlr.v4.runtime.Vocabulary	VOCABULARY

Fields inherited from class org.antlr.v4.runtime.Recognizer

EOF

Constructor Summary

Constructors

Constructor	Description
Antlr4HGVSParser(org.antlr.v4.runtime.TokenStream input)

Method Summary

Modifier and Type	Method	Description
Antlr4HGVSParser.Aa_changeContext	aa_change()
Antlr4HGVSParser.Aa_change_deletionContext	aa_change_deletion()
Antlr4HGVSParser.Aa_change_duplicationContext	aa_change_duplication()
Antlr4HGVSParser.Aa_change_extensionContext	aa_change_extension()
Antlr4HGVSParser.Aa_change_frameshiftContext	aa_change_frameshift()
Antlr4HGVSParser.Aa_change_indelContext	aa_change_indel()
Antlr4HGVSParser.Aa_change_innerContext	aa_change_inner()
Antlr4HGVSParser.Aa_change_insertionContext	aa_change_insertion()
Antlr4HGVSParser.Aa_change_miscContext	aa_change_misc()
Antlr4HGVSParser.Aa_change_ssrContext	aa_change_ssr()
Antlr4HGVSParser.Aa_change_substitutionContext	aa_change_substitution()
Antlr4HGVSParser.Aa_change_unchangedContext	aa_change_unchanged()
Antlr4HGVSParser.Aa_charContext	aa_char()
Antlr4HGVSParser.Aa_multi_allele_varContext	aa_multi_allele_var()
Antlr4HGVSParser.Aa_multi_change_alleleContext	aa_multi_change_allele()
Antlr4HGVSParser.Aa_multi_change_allele_innerContext	aa_multi_change_allele_inner()
Antlr4HGVSParser.Aa_point_locationContext	aa_point_location()
Antlr4HGVSParser.Aa_rangeContext	aa_range()
Antlr4HGVSParser.Aa_single_allele_multi_change_varContext	aa_single_allele_multi_change_var()
Antlr4HGVSParser.Aa_single_allele_single_change_varContext	aa_single_allele_single_change_var()
Antlr4HGVSParser.Aa_single_allele_varContext	aa_single_allele_var()
Antlr4HGVSParser.Aa_stringContext	aa_string()
Antlr4HGVSParser.Aa_var_sepContext	aa_var_sep()
org.antlr.v4.runtime.atn.ATN	getATN()
String	getGrammarFileName()
String[]	getRuleNames()
String	getSerializedATN()
String[]	getTokenNames()	Deprecated.
org.antlr.v4.runtime.Vocabulary	getVocabulary()
Antlr4HGVSParser.Hgvs_variantContext	hgvs_variant()
Antlr4HGVSParser.Legacy_changeContext	legacy_change()
Antlr4HGVSParser.Legacy_change_deletionContext	legacy_change_deletion()
Antlr4HGVSParser.Legacy_change_indelContext	legacy_change_indel()
Antlr4HGVSParser.Legacy_change_insertionContext	legacy_change_insertion()
Antlr4HGVSParser.Legacy_change_substitutionContext	legacy_change_substitution()
Antlr4HGVSParser.Legacy_point_locationContext	legacy_point_location()
Antlr4HGVSParser.Legacy_variantContext	legacy_variant()
Antlr4HGVSParser.Nt_base_locationContext	nt_base_location()
Antlr4HGVSParser.Nt_changeContext	nt_change()
Antlr4HGVSParser.Nt_change_deletionContext	nt_change_deletion()
Antlr4HGVSParser.Nt_change_duplicationContext	nt_change_duplication()
Antlr4HGVSParser.Nt_change_indelContext	nt_change_indel()
Antlr4HGVSParser.Nt_change_innerContext	nt_change_inner()
Antlr4HGVSParser.Nt_change_insertionContext	nt_change_insertion()
Antlr4HGVSParser.Nt_change_inversionContext	nt_change_inversion()
Antlr4HGVSParser.Nt_change_miscContext	nt_change_misc()
Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext	nt_change_not_sequenced_repeat()
Antlr4HGVSParser.Nt_change_repeat_sequenceContext	nt_change_repeat_sequence()
Antlr4HGVSParser.Nt_change_sequenced_repeatContext	nt_change_sequenced_repeat()
Antlr4HGVSParser.Nt_change_ssrContext	nt_change_ssr()
Antlr4HGVSParser.Nt_change_substitutionContext	nt_change_substitution()
Antlr4HGVSParser.Nt_change_unchangedContext	nt_change_unchanged()
Antlr4HGVSParser.Nt_multi_allele_varContext	nt_multi_allele_var()
Antlr4HGVSParser.Nt_multi_change_alleleContext	nt_multi_change_allele()
Antlr4HGVSParser.Nt_multi_change_allele_innerContext	nt_multi_change_allele_inner()
Antlr4HGVSParser.Nt_numberContext	nt_number()
Antlr4HGVSParser.Nt_offsetContext	nt_offset()
Antlr4HGVSParser.Nt_point_locationContext	nt_point_location()
Antlr4HGVSParser.Nt_rangeContext	nt_range()
Antlr4HGVSParser.Nt_single_allele_multi_change_varContext	nt_single_allele_multi_change_var()
Antlr4HGVSParser.Nt_single_allele_single_change_varContext	nt_single_allele_single_change_var()
Antlr4HGVSParser.Nt_single_allele_varContext	nt_single_allele_var()
Antlr4HGVSParser.Nt_stringContext	nt_string()
Antlr4HGVSParser.Nt_var_sepContext	nt_var_sep()
Antlr4HGVSParser.ReferenceContext	reference()

Methods inherited from class org.antlr.v4.runtime.Parser

addParseListener, compileParseTreePattern, compileParseTreePattern, consume, createErrorNode, createTerminalNode, dumpDFA, enterOuterAlt, enterRecursionRule, enterRecursionRule, enterRule, exitRule, getATNWithBypassAlts, getBuildParseTree, getContext, getCurrentToken, getDFAStrings, getErrorHandler, getExpectedTokens, getExpectedTokensWithinCurrentRule, getInputStream, getInvokingContext, getNumberOfSyntaxErrors, getParseInfo, getParseListeners, getPrecedence, getRuleContext, getRuleIndex, getRuleInvocationStack, getRuleInvocationStack, getSourceName, getTokenFactory, getTokenStream, getTrimParseTree, inContext, isExpectedToken, isMatchedEOF, isTrace, match, matchWildcard, notifyErrorListeners, notifyErrorListeners, precpred, pushNewRecursionContext, removeParseListener, removeParseListeners, reset, setBuildParseTree, setContext, setErrorHandler, setInputStream, setProfile, setTokenFactory, setTokenStream, setTrace, setTrimParseTree, unrollRecursionContexts

Methods inherited from class org.antlr.v4.runtime.Recognizer

action, addErrorListener, getErrorHeader, getErrorListenerDispatch, getErrorListeners, getInterpreter, getRuleIndexMap, getState, getTokenErrorDisplay, getTokenType, getTokenTypeMap, removeErrorListener, removeErrorListeners, sempred, setInterpreter, setState

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REFERENCE

public static final int REFERENCE

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Constant Field Values

PAREN_OPEN

public static final int PAREN_OPEN

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Constant Field Values

PAREN_CLOSE

public static final int PAREN_CLOSE

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Constant Field Values

REF_STOP

public static final int REF_STOP

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Constant Field Values

LINE_BREAKS

public static final int LINE_BREAKS

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Constant Field Values

AA_CHANGE_DESCRIPTION

public static final int AA_CHANGE_DESCRIPTION

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Constant Field Values

NT_CHANGE_DESCRIPTION

public static final int NT_CHANGE_DESCRIPTION

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Constant Field Values

LEGACY_IVS_OR_EX

public static final int LEGACY_IVS_OR_EX

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Constant Field Values

NT_CHANGE_SPACE

public static final int NT_CHANGE_SPACE

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Constant Field Values

NT_CHANGE_LINE_BREAK

public static final int NT_CHANGE_LINE_BREAK

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Constant Field Values

NT_STRING

public static final int NT_STRING

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Constant Field Values

NT_NUMBER

public static final int NT_NUMBER

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Constant Field Values

NT_MINUS

public static final int NT_MINUS

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Constant Field Values

NT_PLUS

public static final int NT_PLUS

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Constant Field Values

NT_ASTERISK

public static final int NT_ASTERISK

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Constant Field Values

NT_UNDERSCORE

public static final int NT_UNDERSCORE

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Constant Field Values

NT_COMMA

public static final int NT_COMMA

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Constant Field Values

NT_PAREN_OPEN

public static final int NT_PAREN_OPEN

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Constant Field Values

NT_PAREN_CLOSE

public static final int NT_PAREN_CLOSE

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Constant Field Values

NT_SLASHES

public static final int NT_SLASHES

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Constant Field Values

NT_SQUARE_PAREN_OPEN

public static final int NT_SQUARE_PAREN_OPEN

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Constant Field Values

NT_SQUARE_PAREN_CLOSE

public static final int NT_SQUARE_PAREN_CLOSE

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Constant Field Values

NT_SEMICOLON

public static final int NT_SEMICOLON

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Constant Field Values

NT_DEL

public static final int NT_DEL

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Constant Field Values

NT_DUP

public static final int NT_DUP

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Constant Field Values

NT_INS

public static final int NT_INS

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Constant Field Values

NT_INV

public static final int NT_INV

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Constant Field Values

NT_EQUAL

public static final int NT_EQUAL

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Constant Field Values

NT_SPL

public static final int NT_SPL

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Constant Field Values

NT_QUESTION_MARK

public static final int NT_QUESTION_MARK

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Constant Field Values

NT_ZERO

public static final int NT_ZERO

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Constant Field Values

NT_GT

public static final int NT_GT

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Constant Field Values

AA_NUMBER

public static final int AA_NUMBER

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Constant Field Values

AA_CHANGE_SPACE

public static final int AA_CHANGE_SPACE

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Constant Field Values

AA_CHANGE_LINE_BREAK

public static final int AA_CHANGE_LINE_BREAK

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Constant Field Values

AA_COLON

public static final int AA_COLON

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Constant Field Values

AA_AA3

public static final int AA_AA3

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Constant Field Values

AA_AA1

public static final int AA_AA1

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Constant Field Values

AA_MET

public static final int AA_MET

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Constant Field Values

AA_ZERO

public static final int AA_ZERO

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Constant Field Values

AA_MINUS

public static final int AA_MINUS

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Constant Field Values

AA_PLUS

public static final int AA_PLUS

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Constant Field Values

AA_UNDERSCORE

public static final int AA_UNDERSCORE

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Constant Field Values

AA_FS

public static final int AA_FS

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Constant Field Values

AA_INS

public static final int AA_INS

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Constant Field Values

AA_EXT

public static final int AA_EXT

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Constant Field Values

AA_DUP

public static final int AA_DUP

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Constant Field Values

AA_DEL

public static final int AA_DEL

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Constant Field Values

AA_COMMA

public static final int AA_COMMA

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Constant Field Values

AA_EQUAL

public static final int AA_EQUAL

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Constant Field Values

AA_QUESTION_MARK

public static final int AA_QUESTION_MARK

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Constant Field Values

AA_PAREN_OPEN

public static final int AA_PAREN_OPEN

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Constant Field Values

AA_PAREN_CLOSE

public static final int AA_PAREN_CLOSE

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Constant Field Values

AA_SQUARE_PAREN_OPEN

public static final int AA_SQUARE_PAREN_OPEN

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Constant Field Values

AA_SQUARE_PAREN_CLOSE

public static final int AA_SQUARE_PAREN_CLOSE

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Constant Field Values

AA_SEMICOLON

public static final int AA_SEMICOLON

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Constant Field Values

AA_SLASHES

public static final int AA_SLASHES

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Constant Field Values

AA_TERMINAL

public static final int AA_TERMINAL

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Constant Field Values

ErrorChar

public static final int ErrorChar

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Constant Field Values

RULE_hgvs_variant

public static final int RULE_hgvs_variant

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Constant Field Values

RULE_reference

public static final int RULE_reference

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Constant Field Values

RULE_aa_single_allele_var

public static final int RULE_aa_single_allele_var

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Constant Field Values

RULE_aa_single_allele_single_change_var

public static final int RULE_aa_single_allele_single_change_var

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Constant Field Values

RULE_aa_single_allele_multi_change_var

public static final int RULE_aa_single_allele_multi_change_var

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Constant Field Values

RULE_aa_multi_allele_var

public static final int RULE_aa_multi_allele_var

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Constant Field Values

RULE_aa_multi_change_allele

public static final int RULE_aa_multi_change_allele

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Constant Field Values

RULE_aa_multi_change_allele_inner

public static final int RULE_aa_multi_change_allele_inner

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Constant Field Values

RULE_aa_var_sep

public static final int RULE_aa_var_sep

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Constant Field Values

RULE_aa_change

public static final int RULE_aa_change

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Constant Field Values

RULE_aa_change_inner

public static final int RULE_aa_change_inner

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Constant Field Values

RULE_aa_change_deletion

public static final int RULE_aa_change_deletion

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Constant Field Values

RULE_aa_change_unchanged

public static final int RULE_aa_change_unchanged

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Constant Field Values

RULE_aa_change_duplication

public static final int RULE_aa_change_duplication

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Constant Field Values

RULE_aa_change_extension

public static final int RULE_aa_change_extension

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Constant Field Values

RULE_aa_change_frameshift

public static final int RULE_aa_change_frameshift

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Constant Field Values

RULE_aa_change_indel

public static final int RULE_aa_change_indel

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Constant Field Values

RULE_aa_change_substitution

public static final int RULE_aa_change_substitution

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Constant Field Values

RULE_aa_change_ssr

public static final int RULE_aa_change_ssr

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Constant Field Values

RULE_aa_change_insertion

public static final int RULE_aa_change_insertion

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Constant Field Values

RULE_aa_change_misc

public static final int RULE_aa_change_misc

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Constant Field Values

RULE_aa_point_location

public static final int RULE_aa_point_location

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Constant Field Values

RULE_aa_range

public static final int RULE_aa_range

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Constant Field Values

RULE_aa_string

public static final int RULE_aa_string

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Constant Field Values

RULE_aa_char

public static final int RULE_aa_char

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Constant Field Values

RULE_nt_single_allele_var

public static final int RULE_nt_single_allele_var

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Constant Field Values

RULE_nt_single_allele_single_change_var

public static final int RULE_nt_single_allele_single_change_var

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Constant Field Values

RULE_nt_single_allele_multi_change_var

public static final int RULE_nt_single_allele_multi_change_var

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Constant Field Values

RULE_nt_multi_allele_var

public static final int RULE_nt_multi_allele_var

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Constant Field Values

RULE_nt_multi_change_allele

public static final int RULE_nt_multi_change_allele

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Constant Field Values

RULE_nt_multi_change_allele_inner

public static final int RULE_nt_multi_change_allele_inner

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Constant Field Values

RULE_nt_var_sep

public static final int RULE_nt_var_sep

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Constant Field Values

RULE_nt_change

public static final int RULE_nt_change

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Constant Field Values

RULE_nt_change_inner

public static final int RULE_nt_change_inner

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Constant Field Values

RULE_nt_change_deletion

public static final int RULE_nt_change_deletion

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Constant Field Values

RULE_nt_change_duplication

public static final int RULE_nt_change_duplication

See Also:

Constant Field Values

RULE_nt_change_unchanged

public static final int RULE_nt_change_unchanged

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RULE_nt_change_indel

public static final int RULE_nt_change_indel

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Constant Field Values

RULE_nt_change_inversion

public static final int RULE_nt_change_inversion

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RULE_nt_change_insertion

public static final int RULE_nt_change_insertion

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RULE_nt_change_ssr

public static final int RULE_nt_change_ssr

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Constant Field Values

RULE_nt_change_sequenced_repeat

public static final int RULE_nt_change_sequenced_repeat

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RULE_nt_change_repeat_sequence

public static final int RULE_nt_change_repeat_sequence

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Constant Field Values

RULE_nt_change_not_sequenced_repeat

public static final int RULE_nt_change_not_sequenced_repeat

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RULE_nt_change_substitution

public static final int RULE_nt_change_substitution

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RULE_nt_change_misc

public static final int RULE_nt_change_misc

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RULE_nt_point_location

public static final int RULE_nt_point_location

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RULE_nt_number

public static final int RULE_nt_number

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RULE_nt_base_location

public static final int RULE_nt_base_location

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RULE_nt_offset

public static final int RULE_nt_offset

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RULE_nt_range

public static final int RULE_nt_range

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RULE_nt_string

public static final int RULE_nt_string

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RULE_legacy_variant

public static final int RULE_legacy_variant

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Constant Field Values

RULE_legacy_change

public static final int RULE_legacy_change

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RULE_legacy_change_deletion

public static final int RULE_legacy_change_deletion

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RULE_legacy_change_indel

public static final int RULE_legacy_change_indel

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RULE_legacy_change_insertion

public static final int RULE_legacy_change_insertion

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RULE_legacy_change_substitution

public static final int RULE_legacy_change_substitution

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RULE_legacy_point_location

public static final int RULE_legacy_point_location

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Constant Field Values

ruleNames

public static final String[] ruleNames

VOCABULARY

public static final org.antlr.v4.runtime.Vocabulary VOCABULARY

tokenNames

@Deprecated
public static final String[] tokenNames

Deprecated.

Use VOCABULARY instead.

_serializedATN

public static final String _serializedATN

See Also:

Constant Field Values

_ATN

public static final org.antlr.v4.runtime.atn.ATN _ATN

Constructor Detail

Antlr4HGVSParser

public Antlr4HGVSParser(org.antlr.v4.runtime.TokenStream input)

Method Detail

getTokenNames

@Deprecated
public String[] getTokenNames()

Deprecated.

Specified by:

getTokenNames in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

getVocabulary

public org.antlr.v4.runtime.Vocabulary getVocabulary()

Overrides:

getVocabulary in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

getGrammarFileName

public String getGrammarFileName()

Specified by:

getGrammarFileName in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

getRuleNames

public String[] getRuleNames()

Specified by:

getRuleNames in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

getSerializedATN

public String getSerializedATN()

Overrides:

getSerializedATN in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

getATN

public org.antlr.v4.runtime.atn.ATN getATN()

Specified by:

getATN in class org.antlr.v4.runtime.Recognizer<org.antlr.v4.runtime.Token,org.antlr.v4.runtime.atn.ParserATNSimulator>

hgvs_variant

public final Antlr4HGVSParser.Hgvs_variantContext hgvs_variant()
                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

reference

public final Antlr4HGVSParser.ReferenceContext reference()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_single_allele_var

public final Antlr4HGVSParser.Aa_single_allele_varContext aa_single_allele_var()
                                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_single_allele_single_change_var

public final Antlr4HGVSParser.Aa_single_allele_single_change_varContext aa_single_allele_single_change_var()
                                                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_single_allele_multi_change_var

public final Antlr4HGVSParser.Aa_single_allele_multi_change_varContext aa_single_allele_multi_change_var()
                                                                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_multi_allele_var

public final Antlr4HGVSParser.Aa_multi_allele_varContext aa_multi_allele_var()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_multi_change_allele

public final Antlr4HGVSParser.Aa_multi_change_alleleContext aa_multi_change_allele()
                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_multi_change_allele_inner

public final Antlr4HGVSParser.Aa_multi_change_allele_innerContext aa_multi_change_allele_inner()
                                                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_var_sep

public final Antlr4HGVSParser.Aa_var_sepContext aa_var_sep()
                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change

public final Antlr4HGVSParser.Aa_changeContext aa_change()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_inner

public final Antlr4HGVSParser.Aa_change_innerContext aa_change_inner()
                                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_deletion

public final Antlr4HGVSParser.Aa_change_deletionContext aa_change_deletion()
                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_unchanged

public final Antlr4HGVSParser.Aa_change_unchangedContext aa_change_unchanged()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_duplication

public final Antlr4HGVSParser.Aa_change_duplicationContext aa_change_duplication()
                                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_extension

public final Antlr4HGVSParser.Aa_change_extensionContext aa_change_extension()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_frameshift

public final Antlr4HGVSParser.Aa_change_frameshiftContext aa_change_frameshift()
                                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_indel

public final Antlr4HGVSParser.Aa_change_indelContext aa_change_indel()
                                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_substitution

public final Antlr4HGVSParser.Aa_change_substitutionContext aa_change_substitution()
                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_ssr

public final Antlr4HGVSParser.Aa_change_ssrContext aa_change_ssr()
                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_insertion

public final Antlr4HGVSParser.Aa_change_insertionContext aa_change_insertion()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_change_misc

public final Antlr4HGVSParser.Aa_change_miscContext aa_change_misc()
                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_point_location

public final Antlr4HGVSParser.Aa_point_locationContext aa_point_location()
                                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_range

public final Antlr4HGVSParser.Aa_rangeContext aa_range()
                                                throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_string

public final Antlr4HGVSParser.Aa_stringContext aa_string()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

aa_char

public final Antlr4HGVSParser.Aa_charContext aa_char()
                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_single_allele_var

public final Antlr4HGVSParser.Nt_single_allele_varContext nt_single_allele_var()
                                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_single_allele_single_change_var

public final Antlr4HGVSParser.Nt_single_allele_single_change_varContext nt_single_allele_single_change_var()
                                                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_single_allele_multi_change_var

public final Antlr4HGVSParser.Nt_single_allele_multi_change_varContext nt_single_allele_multi_change_var()
                                                                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_multi_allele_var

public final Antlr4HGVSParser.Nt_multi_allele_varContext nt_multi_allele_var()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_multi_change_allele

public final Antlr4HGVSParser.Nt_multi_change_alleleContext nt_multi_change_allele()
                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_multi_change_allele_inner

public final Antlr4HGVSParser.Nt_multi_change_allele_innerContext nt_multi_change_allele_inner()
                                                                                        throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_var_sep

public final Antlr4HGVSParser.Nt_var_sepContext nt_var_sep()
                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change

public final Antlr4HGVSParser.Nt_changeContext nt_change()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_inner

public final Antlr4HGVSParser.Nt_change_innerContext nt_change_inner()
                                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_deletion

public final Antlr4HGVSParser.Nt_change_deletionContext nt_change_deletion()
                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_duplication

public final Antlr4HGVSParser.Nt_change_duplicationContext nt_change_duplication()
                                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_unchanged

public final Antlr4HGVSParser.Nt_change_unchangedContext nt_change_unchanged()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_indel

public final Antlr4HGVSParser.Nt_change_indelContext nt_change_indel()
                                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_inversion

public final Antlr4HGVSParser.Nt_change_inversionContext nt_change_inversion()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_insertion

public final Antlr4HGVSParser.Nt_change_insertionContext nt_change_insertion()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_ssr

public final Antlr4HGVSParser.Nt_change_ssrContext nt_change_ssr()
                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_sequenced_repeat

public final Antlr4HGVSParser.Nt_change_sequenced_repeatContext nt_change_sequenced_repeat()
                                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_repeat_sequence

public final Antlr4HGVSParser.Nt_change_repeat_sequenceContext nt_change_repeat_sequence()
                                                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_not_sequenced_repeat

public final Antlr4HGVSParser.Nt_change_not_sequenced_repeatContext nt_change_not_sequenced_repeat()
                                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_substitution

public final Antlr4HGVSParser.Nt_change_substitutionContext nt_change_substitution()
                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_change_misc

public final Antlr4HGVSParser.Nt_change_miscContext nt_change_misc()
                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_point_location

public final Antlr4HGVSParser.Nt_point_locationContext nt_point_location()
                                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_number

public final Antlr4HGVSParser.Nt_numberContext nt_number()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_base_location

public final Antlr4HGVSParser.Nt_base_locationContext nt_base_location()
                                                                throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_offset

public final Antlr4HGVSParser.Nt_offsetContext nt_offset()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_range

public final Antlr4HGVSParser.Nt_rangeContext nt_range()
                                                throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

nt_string

public final Antlr4HGVSParser.Nt_stringContext nt_string()
                                                  throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_variant

public final Antlr4HGVSParser.Legacy_variantContext legacy_variant()
                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_change

public final Antlr4HGVSParser.Legacy_changeContext legacy_change()
                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_change_deletion

public final Antlr4HGVSParser.Legacy_change_deletionContext legacy_change_deletion()
                                                                            throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_change_indel

public final Antlr4HGVSParser.Legacy_change_indelContext legacy_change_indel()
                                                                      throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_change_insertion

public final Antlr4HGVSParser.Legacy_change_insertionContext legacy_change_insertion()
                                                                              throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_change_substitution

public final Antlr4HGVSParser.Legacy_change_substitutionContext legacy_change_substitution()
                                                                                    throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException

legacy_point_location

public final Antlr4HGVSParser.Legacy_point_locationContext legacy_point_location()
                                                                          throws org.antlr.v4.runtime.RecognitionException

Throws:

org.antlr.v4.runtime.RecognitionException