NucleotideRepeatSequence (de.charite.compbio:jannovar-hgvs 0.41 API)

java.lang.Object
- de.charite.compbio.jannovar.hgvs.nts.change.NucleotideRepeatSequence

All Implemented Interfaces:: ConvertibleToHGVSString

public class NucleotideRepeatSequence
extends Object
implements ConvertibleToHGVSString

A repeated sequence.

Author:: Mark Woon

Constructor Summary

Constructors
Constructor Description

NucleotideRepeatSequence(String sequence, int copyNumber)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object obj)`
`int`	`getCopyNumber()`
`String`	`getSequence()`
`int`	`hashCode()`
`String`	`toHGVSString()`	Return HGVS representation in three-letter amino acid code.
`String`	`toHGVSString(AminoAcidCode code)`	Return HGVS representation using the given amino acid code.
`String`	`toString()`

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - NucleotideRepeatSequence
```
public NucleotideRepeatSequence(String sequence,
                                int copyNumber)
```
- Method Detail
  - getSequence
```
public String getSequence()
```
  - getCopyNumber
```
public int getCopyNumber()
```
  - toHGVSString
```
public String toHGVSString()
```
    Description copied from interface: ConvertibleToHGVSString
    
    Return HGVS representation in three-letter amino acid code.
    
    Specified by:
    
    toHGVSString in interface ConvertibleToHGVSString
    
    Returns:
    
    HGVS representation, e.g. "133L" for an ProteinPointLocation
  - toHGVSString
```
public String toHGVSString(AminoAcidCode code)
```
    Description copied from interface: ConvertibleToHGVSString
    
    Return HGVS representation using the given amino acid code.
    
    Specified by:
    
    toHGVSString in interface ConvertibleToHGVSString
    
    Parameters:
    
    code - AminoAcidCode to use
    
    Returns:
    
    HGVS representation, e.g. "133L" for an ProteinPointLocation
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object