Enum NucleotideMiscChangeType
- java.lang.Object
-
- java.lang.Enum<NucleotideMiscChangeType>
-
- de.charite.compbio.jannovar.hgvs.nts.change.NucleotideMiscChangeType
-
- All Implemented Interfaces:
Serializable
,Comparable<NucleotideMiscChangeType>
public enum NucleotideMiscChangeType extends Enum<NucleotideMiscChangeType>
Enumeration of the miscellaneous nucleotide change types (for RNA).- Author:
- Manuel Holtgrewe
-
-
Enum Constant Summary
Enum Constants Enum Constant Description NO_CHANGE
no change (=
)NO_RNA
no RNA is produced (0
)SAME_AS_DNA
same RNA change as on DNA level ((?)
)SPLICING_AFFECTED
splicing is expected to be affected (spl?
)UNKNOWN_EFFECT
unknown effect (?
)
-
Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description String
toHGVSString(boolean onlyPredicted)
static NucleotideMiscChangeType
valueOf(String name)
Returns the enum constant of this type with the specified name.static NucleotideMiscChangeType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
-
-
-
Enum Constant Detail
-
SAME_AS_DNA
public static final NucleotideMiscChangeType SAME_AS_DNA
same RNA change as on DNA level ((?)
)
-
UNKNOWN_EFFECT
public static final NucleotideMiscChangeType UNKNOWN_EFFECT
unknown effect (?
)
-
SPLICING_AFFECTED
public static final NucleotideMiscChangeType SPLICING_AFFECTED
splicing is expected to be affected (spl?
)
-
NO_CHANGE
public static final NucleotideMiscChangeType NO_CHANGE
no change (=
)
-
NO_RNA
public static final NucleotideMiscChangeType NO_RNA
no RNA is produced (0
)
-
-
Method Detail
-
values
public static NucleotideMiscChangeType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (NucleotideMiscChangeType c : NucleotideMiscChangeType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
-
valueOf
public static NucleotideMiscChangeType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
-
toHGVSString
public String toHGVSString(boolean onlyPredicted)
- Returns:
- String with HGVS representation of the misc change type
-
-