Package de.charite.compbio.jannovar.hgvs.parser

Class HGVSLexer

java.lang.Object

org.antlr.v4.runtime.Recognizer<Integer,org.antlr.v4.runtime.atn.LexerATNSimulator>

org.antlr.v4.runtime.Lexer

de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer

de.charite.compbio.jannovar.hgvs.parser.HGVSLexer

All Implemented Interfaces:

org.antlr.v4.runtime.TokenSource

public class HGVSLexer
extends Antlr4HGVSLexer

Extends the generated Antlr4HGVSLexer to bail out at the first lexing error.

Author:

Manuel Holtgrewe

Field Summary

Fields inherited from class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer

_ATN, _serializedATN, AA_AA1, AA_AA3, AA_CHANGE_DESCRIPTION, AA_CHANGE_LINE_BREAK, AA_CHANGE_SPACE, AA_COLON, AA_COMMA, AA_DEL, AA_DUP, AA_EQUAL, AA_EXT, AA_FS, AA_INS, AA_MET, AA_MINUS, AA_NUMBER, AA_PAREN_CLOSE, AA_PAREN_OPEN, AA_PLUS, AA_QUESTION_MARK, AA_SEMICOLON, AA_SLASHES, AA_SQUARE_PAREN_CLOSE, AA_SQUARE_PAREN_OPEN, AA_TERMINAL, AA_UNDERSCORE, AA_ZERO, AMINO_ACID_CHANGE, CHANGE_BRANCH, channelNames, ErrorChar, LEGACY_IVS_OR_EX, LINE_BREAKS, modeNames, NT_ASTERISK, NT_CHANGE_DESCRIPTION, NT_CHANGE_LINE_BREAK, NT_CHANGE_SPACE, NT_COMMA, NT_DEL, NT_DUP, NT_EQUAL, NT_GT, NT_INS, NT_INV, NT_MINUS, NT_NUMBER, NT_PAREN_CLOSE, NT_PAREN_OPEN, NT_PLUS, NT_QUESTION_MARK, NT_SEMICOLON, NT_SLASHES, NT_SPL, NT_SQUARE_PAREN_CLOSE, NT_SQUARE_PAREN_OPEN, NT_STRING, NT_UNDERSCORE, NT_ZERO, NUCLEOTIDE_CHANGE, PAREN_CLOSE, PAREN_OPEN, REF_STOP, REFERENCE, ruleNames, tokenNames, VOCABULARY

Fields inherited from class org.antlr.v4.runtime.Lexer

_channel, _hitEOF, _input, _mode, _modeStack, _text, _token, _tokenStartCharIndex, _tokenStartCharPositionInLine, _tokenStartLine, _type, DEFAULT_MODE, DEFAULT_TOKEN_CHANNEL, HIDDEN, MAX_CHAR_VALUE, MIN_CHAR_VALUE, MORE, SKIP

Fields inherited from class org.antlr.v4.runtime.Recognizer

EOF

Constructor Summary

Constructors

Constructor	Description
HGVSLexer(org.antlr.v4.runtime.CharStream input)

Method Summary

Modifier and Type	Method	Description
void	recover(org.antlr.v4.runtime.LexerNoViableAltException e)

Methods inherited from class de.charite.compbio.jannovar.hgvs.parser.Antlr4HGVSLexer

getATN, getChannelNames, getGrammarFileName, getModeNames, getRuleNames, getSerializedATN, getTokenNames, getVocabulary

Methods inherited from class org.antlr.v4.runtime.Lexer

emit, emit, emitEOF, getAllTokens, getChannel, getCharErrorDisplay, getCharIndex, getCharPositionInLine, getErrorDisplay, getErrorDisplay, getInputStream, getLine, getSourceName, getText, getToken, getTokenFactory, getType, mode, more, nextToken, notifyListeners, popMode, pushMode, recover, reset, setChannel, setCharPositionInLine, setInputStream, setLine, setText, setToken, setTokenFactory, setType, skip

Methods inherited from class org.antlr.v4.runtime.Recognizer

action, addErrorListener, getErrorHeader, getErrorListenerDispatch, getErrorListeners, getInterpreter, getParseInfo, getRuleIndexMap, getState, getTokenErrorDisplay, getTokenType, getTokenTypeMap, precpred, removeErrorListener, removeErrorListeners, sempred, setInterpreter, setState

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HGVSLexer

public HGVSLexer(org.antlr.v4.runtime.CharStream input)

Method Detail

recover

public void recover(org.antlr.v4.runtime.LexerNoViableAltException e)

Overrides:

recover in class org.antlr.v4.runtime.Lexer