MultiAlleleProteinVariant (de.charite.compbio:jannovar-hgvs 0.41 API)

java.lang.Object
- de.charite.compbio.jannovar.hgvs.HGVSVariant
- - de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
  - - de.charite.compbio.jannovar.hgvs.protein.variant.MultiAlleleProteinVariant

All Implemented Interfaces:

ConvertibleToHGVSString
```
public class MultiAlleleProteinVariant
extends ProteinVariant
```
Protein variant having multiple alleles.

Author:

Manuel Holtgrewe

Field Summary
- Fields inherited from class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
  NO_PROTEIN_ISOFORM

Constructor Summary

Constructors
Constructor	Description
`MultiAlleleProteinVariant(String proteinID, Collection<ProteinChangeAllele> alleles)`	Construct with the given protein ID and collection of `ProteinChangeAllele`s.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static MultiAlleleProteinVariant`	`build(String proteinID, ProteinChangeAllele... alleles)`
`boolean`	`equals(Object obj)`
`com.google.common.collect.ImmutableList<ProteinChangeAllele>`	`getAlleles()`
`int`	`hashCode()`
`String`	`toHGVSString(AminoAcidCode code)`	Return HGVS representation using the given amino acid code.
`String`	`toString()`

Methods inherited from class de.charite.compbio.jannovar.hgvs.protein.variant.ProteinVariant
getProteinID, getSequenceNamePrefix, toHGVSString

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MultiAlleleProteinVariant

public MultiAlleleProteinVariant(String proteinID,
                                 Collection<ProteinChangeAllele> alleles)

Construct with the given protein ID and collection of ProteinChangeAlleles.

Method Detail
- build
```
public static MultiAlleleProteinVariant build(String proteinID,
                                              ProteinChangeAllele... alleles)
```
  Returns:
  
  single-allele protein variant for the given changes
- getAlleles
```
public com.google.common.collect.ImmutableList<ProteinChangeAllele> getAlleles()
```
  Returns:
  
  the alleles
- toHGVSString
```
public String toHGVSString(AminoAcidCode code)
```
  Description copied from interface: ConvertibleToHGVSString
  
  Return HGVS representation using the given amino acid code.
  
  Parameters:
  
  code - AminoAcidCode to use
  
  Returns:
  
  HGVS representation, e.g. "133L" for an ProteinPointLocation
- toString
```
public String toString()
```
  Overrides:
  
  toString in class ProteinVariant
- hashCode
```
public int hashCode()
```
  Overrides:
  
  hashCode in class ProteinVariant
- equals
```
public boolean equals(Object obj)
```
  Overrides:
  
  equals in class ProteinVariant