ConsumerProcessor (de.charite.compbio:jannovar-htsjdk 0.40 API)

java.lang.Object
- de.charite.compbio.jannovar.mendel.filter.ConsumerProcessor

All Implemented Interfaces:

VariantContextProcessor, Closeable, AutoCloseable
```
public class ConsumerProcessor
extends Object
implements VariantContextProcessor
```
Call a function for each variant put into the pipeline step

Author:

Manuel Holtgrewe

Constructor Summary

Constructors
Constructor Description

ConsumerProcessor(Consumer<htsjdk.variant.variantcontext.VariantContext> sink)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`	Mark processing as done, no more variants will come in.
`void`	`put(htsjdk.variant.variantcontext.VariantContext vc)`	Put a Variant Context into the filter.

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ConsumerProcessor
```
public ConsumerProcessor(Consumer<htsjdk.variant.variantcontext.VariantContext> sink)
```
- Method Detail
  - put
```
public void put(htsjdk.variant.variantcontext.VariantContext vc)
         throws VariantContextFilterException
```
    Description copied from interface: VariantContextProcessor
    
    Put a Variant Context into the filter.
    
    Specified by:
    
    put in interface VariantContextProcessor
    
    Parameters:
    
    vc - VariantContext to put into the filter.
    
    Throws:
    
    VariantContextFilterException - on problems during the filtration
  - close
```
public void close()
```
    Description copied from interface: VariantContextProcessor
    
    Mark processing as done, no more variants will come in.
    
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable
    
    Specified by:
    
    close in interface VariantContextProcessor