VariantContextProcessor (de.charite.compbio:jannovar-htsjdk 0.40 API)

All Superinterfaces:

AutoCloseable, Closeable

All Known Implementing Classes:

ConsumerProcessor, CoordinateSortingChecker, GeneWiseMendelianAnnotationProcessor
```
public interface VariantContextProcessor
extends Closeable
```
Step in a VariantContext processing pipeline, designed as a sink

Author:

Manuel Holtgrewe

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`close()`	Mark processing as done, no more variants will come in.
`void`	`put(htsjdk.variant.variantcontext.VariantContext vc)`	Put a Variant Context into the filter.

- Method Detail
  - put
```
void put(htsjdk.variant.variantcontext.VariantContext vc)
  throws VariantContextFilterException
```
    Put a Variant Context into the filter.
    
    Parameters:
    
    vc - VariantContext to put into the filter.
    
    Throws:
    
    VariantContextFilterException - on problems during the filtration
  - close
```
void close()
```
    Mark processing as done, no more variants will come in.
    
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable