A B C D E F G H I J L M N O P R S T U V

A

AbstractLink - Class in io.jhdf.links

Base class for Link implementations.

AbstractLink(String, Group) - Constructor for class io.jhdf.links.AbstractLink

AbstractNode - Class in io.jhdf

AbstractNode(HdfBackingStorage, long, String, Group) - Constructor for class io.jhdf.AbstractNode

AbstractNode.AttributesLazyInitializer - Class in io.jhdf

addExternalFile(HdfFile) - Method in class io.jhdf.HdfFile

Add an external file to this HDF file.

addFilter(Filter) - Static method in enum io.jhdf.filter.FilterManager

Adds a filter.

address - Variable in class io.jhdf.AbstractNode

ArrayDataType - Class in io.jhdf.object.datatype

Class for reading array data type messages.

ArrayDataType(ByteBuffer) - Constructor for class io.jhdf.object.datatype.ArrayDataType

Attribute - Interface in io.jhdf.api

Interface for HDF5 attributes.

AttributeImpl - Class in io.jhdf

AttributeImpl(HdfBackingStorage, Node, AttributeMessage) - Constructor for class io.jhdf.AttributeImpl

AttributeInfoMessage - Class in io.jhdf.object.message

Attribute Info Message

AttributeMessage - Class in io.jhdf.object.message

AttributeMessage(ByteBuffer, HdfBackingStorage, BitSet) - Constructor for class io.jhdf.object.message.AttributeMessage

AttributeNameForIndexedAttributesRecord - Class in io.jhdf.btree.record

AttributeNameForIndexedAttributesRecord(ByteBuffer) - Constructor for class io.jhdf.btree.record.AttributeNameForIndexedAttributesRecord

attributes - Variable in class io.jhdf.AbstractNode

AttributesLazyInitializer(LazyInitializer<ObjectHeader>) - Constructor for class io.jhdf.AbstractNode.AttributesLazyInitializer

B

BitField - Class in io.jhdf.object.datatype

BitField(ByteBuffer) - Constructor for class io.jhdf.object.datatype.BitField

bitsToInt(BitSet, int, int) - Static method in class io.jhdf.Utils

Takes a BitSet and a range of bits to inspect and converts the bits to a integer.

BTreeDatasetChunkRecord - Class in io.jhdf.btree.record

BTreeDatasetChunkRecord() - Constructor for class io.jhdf.btree.record.BTreeDatasetChunkRecord

BTreeIndex - Class in io.jhdf.dataset.chunked.indexing

Implements B Tree V2 chunk indexing

BTreeIndex(HdfBackingStorage, long, DatasetInfo) - Constructor for class io.jhdf.dataset.chunked.indexing.BTreeIndex

BTreeKValuesMessage - Class in io.jhdf.object.message

B-tree ‘K’ Values Message

BTreeRecord - Class in io.jhdf.btree.record

BTreeRecord() - Constructor for class io.jhdf.btree.record.BTreeRecord

BTreeV1 - Class in io.jhdf.btree

Class to represent V1 B-trees

BTreeV1Data - Class in io.jhdf.btree

V1 B-trees where the node type is 1 i.e.

BTreeV1Group - Class in io.jhdf.btree

V1 B-trees where the node type is 0 i.e.

BTreeV2<T extends BTreeRecord> - Class in io.jhdf.btree

BTreeV2(HdfBackingStorage, long) - Constructor for class io.jhdf.btree.BTreeV2

BTreeV2(HdfBackingStorage, long, DatasetInfo) - Constructor for class io.jhdf.btree.BTreeV2

ByteShuffleFilter - Class in io.jhdf.filter

ByteShuffleFilter() - Constructor for class io.jhdf.filter.ByteShuffleFilter

bytesNeededToHoldNumber(long) - Static method in class io.jhdf.Utils

Calculates how many bytes are needed to store the given unsigned number.

C

checksum(ByteBuffer) - Static method in class io.jhdf.checksum.ChecksumUtils

checksum(byte[]) - Static method in class io.jhdf.checksum.ChecksumUtils

ChecksumUtils - Class in io.jhdf.checksum

Chunk - Interface in io.jhdf.dataset.chunked

ChunkedDataLayoutMessage(BitSet, long, int, int[]) - Constructor for class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessage

ChunkedDataset - Interface in io.jhdf.api.dataset

Interface for chunked datasets

ChunkedDatasetBase - Class in io.jhdf.dataset.chunked

ChunkedDatasetBase(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.chunked.ChunkedDatasetBase

ChunkedDatasetBase.FilterPipelineLazyInitializer - Class in io.jhdf.dataset.chunked

ChunkedDatasetV3 - Class in io.jhdf.dataset.chunked

This represents chunked datasets using a b-tree for indexing raw data chunks.

ChunkedDatasetV3(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.chunked.ChunkedDatasetV3

ChunkedDatasetV4 - Class in io.jhdf.dataset.chunked

ChunkedDatasetV4(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.chunked.ChunkedDatasetV4

ChunkImpl - Class in io.jhdf.dataset.chunked.indexing

ChunkImpl(long, int, int[]) - Constructor for class io.jhdf.dataset.chunked.indexing.ChunkImpl

ChunkImpl(long, int, int[], BitSet) - Constructor for class io.jhdf.dataset.chunked.indexing.ChunkImpl

ChunkIndex - Interface in io.jhdf.dataset.chunked.indexing

chunkIndexToChunkOffset(int, int[], int[]) - Static method in class io.jhdf.Utils

Calculates the chunk offset from a given chunk index

ChunkOffset - Class in io.jhdf.dataset.chunked

Class to wrap an int[] to be used as Map keys

ChunkOffset(int[]) - Constructor for class io.jhdf.dataset.chunked.ChunkOffset

classBits - Variable in class io.jhdf.object.datatype.DataType

close() - Method in class io.jhdf.HdfFile

close() - Method in interface io.jhdf.storage.HdfBackingStorage

close() - Method in class io.jhdf.storage.HdfFileChannel

close() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

CommittedDatatype - Class in io.jhdf

CommittedDatatype(HdfBackingStorage, long, String, Group) - Constructor for class io.jhdf.CommittedDatatype

CompactDataset - Class in io.jhdf.dataset

CompactDataset(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.CompactDataset

CompoundDatasetReader - Class in io.jhdf.dataset

CompoundDataType - Class in io.jhdf.object.datatype

Class for reading compound data type messages.

CompoundDataType(ByteBuffer) - Constructor for class io.jhdf.object.datatype.CompoundDataType

CompoundDataType.CompoundDataMember - Class in io.jhdf.object.datatype

Constants - Class in io.jhdf

Constants used in HDF5 files

ContiguousDataset - Interface in io.jhdf.api.dataset

Interface for contiguous datasets

ContiguousDatasetImpl - Class in io.jhdf.dataset

ContiguousDatasetImpl(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.ContiguousDatasetImpl

convertToCorrectEndiness(ByteBuffer) - Method in class io.jhdf.dataset.DatasetBase

createDataBTree(HdfBackingStorage, long, int) - Static method in class io.jhdf.btree.BTreeV1

createDataLayoutMessage(ByteBuffer, Superblock, BitSet) - Static method in class io.jhdf.object.message.DataLayoutMessage

createDataset(HdfBackingStorage, ObjectHeader, String, Group) - Static method in class io.jhdf.dataset.DatasetLoader

createGroupBTree(HdfBackingStorage, long) - Static method in class io.jhdf.btree.BTreeV1

createSubBuffer(ByteBuffer, int) - Static method in class io.jhdf.Utils

Creates a new ByteBuffer of the specified length.

D

DataLayout - Enum in io.jhdf.object.message

DataLayoutMessage - Class in io.jhdf.object.message

DataLayoutMessage(BitSet) - Constructor for class io.jhdf.object.message.DataLayoutMessage

DataLayoutMessage.ChunkedDataLayoutMessage - Class in io.jhdf.object.message

DataLayoutMessage.ChunkedDataLayoutMessageV4 - Class in io.jhdf.object.message

DataLayoutMessage.CompactDataLayoutMessage - Class in io.jhdf.object.message

DataLayoutMessage.ContiguousDataLayoutMessage - Class in io.jhdf.object.message

Dataset - Interface in io.jhdf.api

HDF5 dataset.

DatasetBase - Class in io.jhdf.dataset

DatasetBase(HdfBackingStorage, long, String, Group, ObjectHeader) - Constructor for class io.jhdf.dataset.DatasetBase

DatasetInfo - Class in io.jhdf.dataset.chunked

Data class for passing dataset information

DatasetInfo(int, int[], int[]) - Constructor for class io.jhdf.dataset.chunked.DatasetInfo

DatasetLoader - Class in io.jhdf.dataset

DatasetReader - Class in io.jhdf.dataset

This class handles converting the ByteBuffer obtained from the file into a Java array containing the data.

DataSpace - Class in io.jhdf.object.message

DataSpaceMessage - Class in io.jhdf.object.message

Data Space Message.

DataType - Class in io.jhdf.object.datatype

DataType(ByteBuffer) - Constructor for class io.jhdf.object.datatype.DataType

DataTypeMessage - Class in io.jhdf.object.message

decode(byte[], int[]) - Method in class io.jhdf.filter.ByteShuffleFilter

decode(byte[], int[]) - Method in class io.jhdf.filter.DeflatePipelineFilter

decode(byte[], int[]) - Method in interface io.jhdf.filter.Filter

Applies this filter to decode data.

decode(byte[]) - Method in class io.jhdf.filter.FilterPipeline

Applies all the filters in this pipeline to decode the data.

decode(byte[], int[]) - Method in class io.jhdf.filter.FletcherChecksumFilter

decode(byte[], int[]) - Method in class io.jhdf.filter.LzfFilter

DeflatePipelineFilter - Class in io.jhdf.filter

DeflatePipelineFilter() - Constructor for class io.jhdf.filter.DeflatePipelineFilter

dimensionIndexToLinearIndex(int[], int[]) - Static method in class io.jhdf.Utils

E

EmptyChunkIndex - Class in io.jhdf.dataset.chunked.indexing

EmptyChunkIndex() - Constructor for class io.jhdf.dataset.chunked.indexing.EmptyChunkIndex

entriesUsed - Variable in class io.jhdf.btree.BTreeV1

EnumDatasetReader - Class in io.jhdf.dataset

Special case of dataset reader for filling enum datasets, handles converting integer values into the enum strings on the fly while filling.

EnumDataType - Class in io.jhdf.object.datatype

Class for reading enum data type messages.

EnumDataType(ByteBuffer) - Constructor for class io.jhdf.object.datatype.EnumDataType

equals(Object) - Method in class io.jhdf.dataset.chunked.ChunkOffset

ExtensibleArrayIndex - Class in io.jhdf.dataset.chunked.indexing

Extensible Array Chunk Index

ExtensibleArrayIndex(HdfBackingStorage, long, DatasetInfo) - Constructor for class io.jhdf.dataset.chunked.indexing.ExtensibleArrayIndex

ExternalLink - Class in io.jhdf.links

Link to a Node in an external HDF5 file.

ExternalLink(String, String, String, Group) - Constructor for class io.jhdf.links.ExternalLink

F

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.ArrayDataType

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.BitField

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.CompoundDataType

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.DataType

Fill the data from buffer into the returned Object using this DataType

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.EnumDataType

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.FixedPoint

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.FloatingPoint

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.OpaqueDataType

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.Reference

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.StringData

fillData(ByteBuffer, int[], HdfBackingStorage) - Method in class io.jhdf.object.datatype.VariableLength

fillDataFromChunk(Chunk, byte[], int[], int[], int[], int, int) - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

FillValueMessage - Class in io.jhdf.object.message

Fill Value Message.

FillValueOldMessage - Class in io.jhdf.object.message

Fill Value (Old) Message

Filter - Interface in io.jhdf.filter

Interface to be implemented to be a HDF5 filter.

FilteredDatasetChunks - Class in io.jhdf.btree.record

Version 2 B-tree, Type 11 Record Layout - Filtered Dataset Chunks

FilteredDatasetChunks(ByteBuffer, DatasetInfo) - Constructor for class io.jhdf.btree.record.FilteredDatasetChunks

FilterInfo(int, String, boolean, int[]) - Constructor for class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

FilterManager - Enum in io.jhdf.filter

This is a singleton for managing the loaded HDF5 filters.

FilterPipeline - Class in io.jhdf.filter

A collection of filters making up a ordered pipeline to decode chunks.

FilterPipelineLazyInitializer() - Constructor for class io.jhdf.dataset.chunked.ChunkedDatasetBase.FilterPipelineLazyInitializer

FilterPipelineMessage - Class in io.jhdf.object.message

The Data Storage - FilterInfo Pipeline Message

FilterPipelineMessage(ByteBuffer, BitSet) - Constructor for class io.jhdf.object.message.FilterPipelineMessage

FilterPipelineMessage.FilterInfo - Class in io.jhdf.object.message

FixedArrayIndex - Class in io.jhdf.dataset.chunked.indexing

FixedArrayIndex(HdfBackingStorage, long, DatasetInfo) - Constructor for class io.jhdf.dataset.chunked.indexing.FixedArrayIndex

FixedPoint - Class in io.jhdf.object.datatype

FixedPoint(ByteBuffer) - Constructor for class io.jhdf.object.datatype.FixedPoint

FletcherChecksumFilter - Class in io.jhdf.filter

This is a placeholder for the checksum filter.

FletcherChecksumFilter() - Constructor for class io.jhdf.filter.FletcherChecksumFilter

FloatingPoint - Class in io.jhdf.object.datatype

FloatingPoint(ByteBuffer) - Constructor for class io.jhdf.object.datatype.FloatingPoint

FractalHeap - Class in io.jhdf

Fractal heap implementation.

FractalHeap(HdfBackingStorage, long) - Constructor for class io.jhdf.FractalHeap

fromBuffer(ByteBuffer, Superblock) - Static method in class io.jhdf.object.message.LinkMessage

fromByteBuffer(ByteBuffer) - Static method in class io.jhdf.HdfFile

Opens an HDF5 contained in ByteBuffer

fromBytes(byte[]) - Static method in class io.jhdf.HdfFile

Opens an HDF5 contained in an in-memory byte array.

fromInputStream(InputStream) - Static method in class io.jhdf.HdfFile

Opens an HdfFile from an InputStream.

G

getAccessTime() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getAddress() - Method in class io.jhdf.AbstractNode

getAddress() - Method in interface io.jhdf.api.Node

This returns the byte offset into the file of the object header for this node.

getAddress() - Method in class io.jhdf.btree.BTreeV1

getAddress() - Method in class io.jhdf.btree.record.HugeFractalHeapObjectUnfilteredRecord

getAddress() - Method in interface io.jhdf.dataset.chunked.Chunk

Gets the address of this chunk in the file

getAddress() - Method in class io.jhdf.dataset.chunked.indexing.ChunkImpl

getAddress() - Method in enum io.jhdf.dataset.NoParent

getAddress() - Method in class io.jhdf.FractalHeap

getAddress() - Method in class io.jhdf.HdfFile

getAddress() - Method in class io.jhdf.links.AbstractLink

getAddress() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getAddress() - Method in class io.jhdf.object.message.DataLayoutMessage.ContiguousDataLayoutMessage

getAddress() - Method in class io.jhdf.ObjectHeader

getAddress() - Method in class io.jhdf.SymbolTableEntry

getAddressOfDataSegment() - Method in class io.jhdf.LocalHeap

getAddressOfGlobalFreeSpaceIndex() - Method in class io.jhdf.Superblock.SuperblockV0V1

getAddressOfManagedBlocksFreeSpaceManager() - Method in class io.jhdf.FractalHeap

getAllChunks() - Method in class io.jhdf.dataset.chunked.indexing.BTreeIndex

getAllChunks() - Method in interface io.jhdf.dataset.chunked.indexing.ChunkIndex

getAllChunks() - Method in class io.jhdf.dataset.chunked.indexing.EmptyChunkIndex

getAllChunks() - Method in class io.jhdf.dataset.chunked.indexing.ExtensibleArrayIndex

getAllChunks() - Method in class io.jhdf.dataset.chunked.indexing.FixedArrayIndex

getAllChunks() - Method in class io.jhdf.dataset.chunked.indexing.SingleChunkIndex

getAmountOfAllocatedManagedSpaceInHeap() - Method in class io.jhdf.FractalHeap

getAmountOfManagedSpaceInHeap() - Method in class io.jhdf.FractalHeap

getArrayTypeDimensions() - Method in class io.jhdf.object.datatype.ArrayDataType

Get the instance dimensions

getAsciiTag() - Method in class io.jhdf.object.datatype.OpaqueDataType

getAttribute(String) - Method in class io.jhdf.AbstractNode

getAttribute(String) - Method in interface io.jhdf.api.Node

Gets the attribute with the given name.

getAttribute(String) - Method in enum io.jhdf.dataset.NoParent

getAttribute(String) - Method in class io.jhdf.HdfFile

getAttribute(String) - Method in class io.jhdf.links.AbstractLink

getAttributeCreationOrderBTreeAddress() - Method in class io.jhdf.object.message.AttributeInfoMessage

getAttributeNameBTreeAddress() - Method in class io.jhdf.object.message.AttributeInfoMessage

getAttributes() - Method in class io.jhdf.AbstractNode

getAttributes() - Method in interface io.jhdf.api.Node

Gets the attributes associated with this Node.

getAttributes() - Method in enum io.jhdf.dataset.NoParent

getAttributes() - Method in class io.jhdf.HdfFile

getAttributes() - Method in class io.jhdf.links.AbstractLink

getBaseAddressByte() - Method in class io.jhdf.Superblock

getBaseAddressByte() - Method in class io.jhdf.Superblock.SuperblockV0V1

getBaseAddressByte() - Method in class io.jhdf.Superblock.SuperblockV2V3

getBaseType() - Method in class io.jhdf.object.datatype.ArrayDataType

getBaseType() - Method in class io.jhdf.object.datatype.EnumDataType

getBirthTime() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getBitOffset() - Method in class io.jhdf.object.datatype.BitField

getBitOffset() - Method in class io.jhdf.object.datatype.FixedPoint

getBitOffset() - Method in class io.jhdf.object.datatype.FloatingPoint

getBitPrecision() - Method in class io.jhdf.object.datatype.BitField

getBitPrecision() - Method in class io.jhdf.object.datatype.FixedPoint

getBitPrecision() - Method in class io.jhdf.object.datatype.FloatingPoint

getBTreeAddress() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessage

getBTreeAddress() - Method in class io.jhdf.object.message.SymbolTableMessage

getBTreeAddress() - Method in class io.jhdf.SymbolTableEntry

getBTreeAddressOfHugeObjects() - Method in class io.jhdf.FractalHeap

getBTreeCreationOrderIndexAddress() - Method in class io.jhdf.object.message.LinkInfoMessage

getBTreeNameIndexAddress() - Method in class io.jhdf.object.message.LinkInfoMessage

getBuffer() - Method in interface io.jhdf.api.Attribute

Gets the buffer for this attribute

getBuffer() - Method in interface io.jhdf.api.dataset.ContiguousDataset

Gets the buffer for this dataset

getBuffer() - Method in class io.jhdf.AttributeImpl

getBuffer() - Method in class io.jhdf.dataset.ContiguousDatasetImpl

getByPath(String) - Method in interface io.jhdf.api.Group

Gets a Node by path.

getByPath(String) - Method in enum io.jhdf.dataset.NoParent

getByPath(String) - Method in class io.jhdf.GroupImpl

getByPath(String) - Method in class io.jhdf.HdfFile

getByteOrder() - Method in class io.jhdf.object.datatype.BitField

getByteOrder() - Method in class io.jhdf.object.datatype.FixedPoint

getByteOrder() - Method in class io.jhdf.object.datatype.FloatingPoint

getByteOrder() - Method in interface io.jhdf.object.datatype.OrderedDataType

getCacheType() - Method in class io.jhdf.SymbolTableEntry

getChangeTime() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getCharset() - Method in class io.jhdf.object.datatype.StringData

getChild(String) - Method in interface io.jhdf.api.Group

Gets a child of this group by name.

getChild(String) - Method in enum io.jhdf.dataset.NoParent

getChild(String) - Method in class io.jhdf.GroupImpl

getChild(String) - Method in class io.jhdf.HdfFile

getChildAddresses() - Method in class io.jhdf.btree.BTreeV1

getChildren() - Method in interface io.jhdf.api.Group

Gets the children in this group, i.e other groups and datasets contained inside this group.

getChildren() - Method in enum io.jhdf.dataset.NoParent

getChildren() - Method in class io.jhdf.GroupImpl

getChildren() - Method in class io.jhdf.HdfFile

getChunk() - Method in class io.jhdf.btree.record.BTreeDatasetChunkRecord

getChunk() - Method in class io.jhdf.btree.record.FilteredDatasetChunks

getChunk() - Method in class io.jhdf.btree.record.NonFilteredDatasetChunks

getChunkDimensions() - Method in interface io.jhdf.api.dataset.ChunkedDataset

Gets the chunk dimensions of this dataset.

getChunkDimensions() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetV3

getChunkDimensions() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetV4

getChunkDimensions() - Method in class io.jhdf.dataset.chunked.DatasetInfo

getChunkDimensions() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessage

getChunkDimensions() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getChunkInternalOffsets(int[], int) - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

Gets the offsets inside a chunk where a contiguous run of data starts.

getChunkLookup() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

getChunkLookup() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetV3

getChunkLookup() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetV4

getChunkOffset() - Method in interface io.jhdf.dataset.chunked.Chunk

Gets this chunks offset within the dataset

getChunkOffset() - Method in class io.jhdf.dataset.chunked.indexing.ChunkImpl

getChunks() - Method in class io.jhdf.btree.BTreeV1Data

getChunkSizeInBytes() - Method in class io.jhdf.dataset.chunked.DatasetInfo

getComment() - Method in class io.jhdf.object.message.ObjectCommentMessage

getCreationOrder() - Method in class io.jhdf.btree.record.AttributeNameForIndexedAttributesRecord

getCreationOrder() - Method in class io.jhdf.object.message.LinkMessage

getData() - Method in interface io.jhdf.api.Attribute

Gets the data from the attributes dataset and converts it into a Java array of dimensions of the dataset as returned by Attribute.getDimensions().

getData() - Method in interface io.jhdf.api.Dataset

Gets the data from the HDF5 dataset and converts it to a Java object.

getData() - Method in class io.jhdf.AttributeImpl

getData() - Method in class io.jhdf.dataset.DatasetBase

getData() - Method in class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

getDataAddress() - Method in interface io.jhdf.api.dataset.ContiguousDataset

Gets the address of the data in the HDF5-file relative to the end of the userblock.

getDataAddress() - Method in class io.jhdf.dataset.ContiguousDatasetImpl

getDataBuffer() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

getDataBuffer() - Method in class io.jhdf.dataset.CompactDataset

getDataBuffer() - Method in class io.jhdf.dataset.ContiguousDatasetImpl

getDataBuffer() - Method in class io.jhdf.dataset.DatasetBase

Gets the buffer that holds this datasets data.

getDataBuffer() - Method in class io.jhdf.LocalHeap

getDataBuffer() - Method in class io.jhdf.object.message.AttributeMessage

getDataBuffer() - Method in class io.jhdf.object.message.DataLayoutMessage.CompactDataLayoutMessage

getDataClass() - Method in class io.jhdf.object.datatype.DataType

getDataLayout() - Method in interface io.jhdf.api.Dataset

Gets the data layout of this dataset.

getDataLayout() - Method in class io.jhdf.dataset.DatasetBase

getDataLayout() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessage

getDataLayout() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getDataLayout() - Method in class io.jhdf.object.message.DataLayoutMessage.CompactDataLayoutMessage

getDataLayout() - Method in class io.jhdf.object.message.DataLayoutMessage.ContiguousDataLayoutMessage

getDataLayout() - Method in class io.jhdf.object.message.DataLayoutMessage

getDataOffsets(int[]) - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

Calculates the linear offsets into the dataset for each of the chunks internal offsets.

getDataSegmentSize() - Method in class io.jhdf.LocalHeap

getDatasetByPath(String) - Method in interface io.jhdf.api.Group

Gets a Dataset by path.

getDatasetByPath(String) - Method in enum io.jhdf.dataset.NoParent

getDatasetByPath(String) - Method in class io.jhdf.GroupImpl

getDatasetByPath(String) - Method in class io.jhdf.HdfFile

getDatasetDimensions() - Method in class io.jhdf.dataset.chunked.DatasetInfo

getDataSpace() - Method in class io.jhdf.object.message.AttributeMessage

getDataSpace() - Method in class io.jhdf.object.message.DataSpaceMessage

getDataType() - Method in interface io.jhdf.api.Dataset

Gets the DataType that is used to represent the data in the HDF5-file.

getDataType() - Method in class io.jhdf.CommittedDatatype

getDataType() - Method in class io.jhdf.dataset.DatasetBase

getDataType() - Method in class io.jhdf.object.datatype.CompoundDataType.CompoundDataMember

getDataType() - Method in class io.jhdf.object.message.AttributeMessage

getDataType() - Method in class io.jhdf.object.message.DataTypeMessage

getDimensions() - Method in interface io.jhdf.api.Attribute

Gets the dimensions of this attributes dataset

getDimensions() - Method in interface io.jhdf.api.Dataset

Gets the dimensions of this dataset

getDimensions() - Method in class io.jhdf.AttributeImpl

getDimensions() - Method in class io.jhdf.dataset.DatasetBase

getDimensions() - Method in class io.jhdf.object.message.DataSpace

getDimensionSize() - Method in class io.jhdf.object.datatype.CompoundDataType.CompoundDataMember

getDriverInformationBlockAddress() - Method in class io.jhdf.Superblock.SuperblockV0V1

getEncoding() - Method in class io.jhdf.object.datatype.VariableLength

getEndOfFileAddress() - Method in class io.jhdf.Superblock

getEndOfFileAddress() - Method in class io.jhdf.Superblock.SuperblockV0V1

getEndOfFileAddress() - Method in class io.jhdf.Superblock.SuperblockV2V3

getEntriesUsed() - Method in class io.jhdf.btree.BTreeV1

getEnumMapping() - Method in class io.jhdf.object.datatype.EnumDataType

getEstimatedLengthOfEntryName() - Method in class io.jhdf.object.message.GroupInfoMessage

getEstimatedNumberOfEntries() - Method in class io.jhdf.object.message.GroupInfoMessage

getExponentBias() - Method in class io.jhdf.object.datatype.FloatingPoint

getExponentLocation() - Method in class io.jhdf.object.datatype.FloatingPoint

getExponentSize() - Method in class io.jhdf.object.datatype.FloatingPoint

getExternalFile() - Method in class io.jhdf.object.message.LinkMessage

getExternalPath() - Method in class io.jhdf.object.message.LinkMessage

getFile() - Method in class io.jhdf.AbstractNode

getFile() - Method in interface io.jhdf.api.Node

Gets the File object containing this Node.

Call Node.getFileAsPath() instead if the file does not reside in the default file system.

getFile() - Method in enum io.jhdf.dataset.NoParent

getFile() - Method in exception io.jhdf.exceptions.HdfInvalidPathException

getFile() - Method in class io.jhdf.HdfFile

getFile() - Method in class io.jhdf.links.AbstractLink

getFileAsPath() - Method in class io.jhdf.AbstractNode

getFileAsPath() - Method in interface io.jhdf.api.Node

Gets the Path object containing this Node.

getFileAsPath() - Method in enum io.jhdf.dataset.NoParent

getFileAsPath() - Method in exception io.jhdf.exceptions.HdfInvalidPathException

getFileAsPath() - Method in class io.jhdf.HdfFile

getFileAsPath() - Method in class io.jhdf.links.AbstractLink

getFileChannel() - Method in interface io.jhdf.storage.HdfBackingStorage

getFileChannel() - Method in class io.jhdf.storage.HdfFileChannel

getFileChannel() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

getFillValue() - Method in interface io.jhdf.api.Dataset

Gets the fill value for this dataset or null if not defined.

getFillValue() - Method in class io.jhdf.dataset.DatasetBase

getFillValue() - Method in class io.jhdf.object.message.FillValueMessage

getFillValue() - Method in class io.jhdf.object.message.FillValueOldMessage

The fill value.

getFillValueWriteTime() - Method in class io.jhdf.object.message.FillValueMessage

getFilterMask() - Method in interface io.jhdf.dataset.chunked.Chunk

getFilterMask() - Method in class io.jhdf.dataset.chunked.indexing.ChunkImpl

getFilterMaskFilteredSingleChunk() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getFilters() - Method in class io.jhdf.object.message.FilterPipelineMessage

getFlags() - Method in class io.jhdf.btree.record.AttributeNameForIndexedAttributesRecord

getFractalHeapAddress() - Method in class io.jhdf.object.message.AttributeInfoMessage

getFractalHeapAddress() - Method in class io.jhdf.object.message.LinkInfoMessage

getFreeSpaceInManagedBlocks() - Method in class io.jhdf.FractalHeap

getGroupInternalNodeK() - Method in class io.jhdf.object.message.BTreeKValuesMessage

getGroupInternalNodeK() - Method in class io.jhdf.Superblock.SuperblockV0V1

getGroupLeafNodeK() - Method in class io.jhdf.object.message.BTreeKValuesMessage

getGroupLeafNodeK() - Method in class io.jhdf.Superblock.SuperblockV0V1

getHardLinkAddress() - Method in class io.jhdf.object.message.LinkMessage

getHash() - Method in class io.jhdf.btree.record.AttributeNameForIndexedAttributesRecord

getHash() - Method in class io.jhdf.btree.record.LinkNameForIndexedGroupRecord

getHdfBackingStorage() - Method in class io.jhdf.HdfFile

getHdfFile() - Method in class io.jhdf.AbstractNode

getHdfFile() - Method in interface io.jhdf.api.Node

Gets the parent HdfFile of this node can be useful if you want to resolve an absolute path in this file.

getHdfFile() - Method in enum io.jhdf.dataset.NoParent

getHdfFile() - Method in class io.jhdf.HdfFile

getHdfFile() - Method in class io.jhdf.links.AbstractLink

getHeader() - Method in class io.jhdf.AbstractNode

getHeaderMessage(Class<T>) - Method in class io.jhdf.AbstractNode

getHeapAddress() - Method in class io.jhdf.dataset.GlobalHeapId

getHeapId() - Method in class io.jhdf.btree.record.AttributeNameForIndexedAttributesRecord

getId() - Method in class io.jhdf.btree.record.HugeFractalHeapObjectUnfilteredRecord

getId() - Method in class io.jhdf.btree.record.LinkNameForIndexedGroupRecord

getId() - Method in class io.jhdf.filter.ByteShuffleFilter

getId() - Method in class io.jhdf.filter.DeflatePipelineFilter

getId() - Method in interface io.jhdf.filter.Filter

Gets the ID of this filter, this must match the ID in the dataset header.

getId() - Method in class io.jhdf.filter.FletcherChecksumFilter

getId() - Method in class io.jhdf.filter.LzfFilter

Id defined in https://support.hdfgroup.org/services/filters.html

getId(ByteBuffer) - Method in class io.jhdf.FractalHeap

getId() - Method in class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

getIdLength() - Method in class io.jhdf.FractalHeap

getIndex() - Method in class io.jhdf.dataset.GlobalHeapId

getIndexedStorageInternalNodeK() - Method in class io.jhdf.object.message.BTreeKValuesMessage

getIndexElements() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getIndexingType() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getIoFiltersLength() - Method in class io.jhdf.FractalHeap

getJavaType() - Method in interface io.jhdf.api.Attribute

Gets the Java type that will be used to represent this attributes data.

getJavaType() - Method in interface io.jhdf.api.Dataset

Gets the Java type that will be used to represent this data.

getJavaType() - Method in class io.jhdf.AttributeImpl

getJavaType() - Method in class io.jhdf.dataset.DatasetBase

getJavaType() - Method in class io.jhdf.object.datatype.ArrayDataType

getJavaType() - Method in class io.jhdf.object.datatype.BitField

getJavaType() - Method in class io.jhdf.object.datatype.CompoundDataType

getJavaType() - Method in class io.jhdf.object.datatype.DataType

Get the Java Class of this HDF5 type

getJavaType() - Method in class io.jhdf.object.datatype.EnumDataType

getJavaType() - Method in class io.jhdf.object.datatype.FixedPoint

getJavaType() - Method in class io.jhdf.object.datatype.FloatingPoint

getJavaType() - Method in class io.jhdf.object.datatype.OpaqueDataType

getJavaType() - Method in class io.jhdf.object.datatype.Reference

getJavaType() - Method in class io.jhdf.object.datatype.StringData

getJavaType() - Method in class io.jhdf.object.datatype.VariableLength

getLeftSiblingAddress() - Method in class io.jhdf.btree.BTreeV1

getLength() - Method in class io.jhdf.btree.record.HugeFractalHeapObjectUnfilteredRecord

getLength() - Method in class io.jhdf.object.message.ObjectHeaderContinuationMessage

getLinkName() - Method in class io.jhdf.object.message.LinkMessage

getLinkNameOffset() - Method in class io.jhdf.SymbolTableEntry

getLinkType() - Method in class io.jhdf.object.message.LinkMessage

getLinkValueOffset() - Method in class io.jhdf.SymbolTableEntry

getLocalHeapAddress() - Method in class io.jhdf.object.message.SymbolTableMessage

getMantissaLocation() - Method in class io.jhdf.object.datatype.FloatingPoint

getMantissaNormalization() - Method in class io.jhdf.object.datatype.FloatingPoint

getMantissaSize() - Method in class io.jhdf.object.datatype.FloatingPoint

getMaxBits() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getMaxDirectBlockSize() - Method in class io.jhdf.FractalHeap

getMaximumCompactLinks() - Method in class io.jhdf.object.message.GroupInfoMessage

getMaximumCreationIndex() - Method in class io.jhdf.object.message.AttributeInfoMessage

getMaximumCreationIndex() - Method in class io.jhdf.object.message.LinkInfoMessage

getMaximumNumberOfCompactAttributes() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getMaximumNumberOfDenseAttributes() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getMaxSize() - Method in interface io.jhdf.api.Dataset

Gets the max size of this dataset.

getMaxSize() - Method in class io.jhdf.dataset.DatasetBase

getMaxSizeOfManagedObjects() - Method in class io.jhdf.FractalHeap

getMaxSizes() - Method in class io.jhdf.object.message.DataSpace

getMembers() - Method in class io.jhdf.object.datatype.CompoundDataType

getMergePercent() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getMessageOfType(Class<T>) - Method in class io.jhdf.ObjectHeader

getMessages() - Method in class io.jhdf.ObjectHeader

getMessagesOfType(Class<T>) - Method in class io.jhdf.ObjectHeader

getMinElements() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getMinimumDenseLinks() - Method in class io.jhdf.object.message.GroupInfoMessage

getMinPointers() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getModificationTime() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getModifiedTime() - Method in class io.jhdf.object.message.ObjectModificationTimeMessage

getModifiedTime() - Method in class io.jhdf.object.message.OldObjectModificationTimeMessage

getName() - Method in class io.jhdf.AbstractNode

getName() - Method in interface io.jhdf.api.Attribute

Gets the name of this Attribute

getName() - Method in interface io.jhdf.api.Node

Gets the name of this Node

getName() - Method in class io.jhdf.AttributeImpl

getName() - Method in enum io.jhdf.dataset.NoParent

getName() - Method in class io.jhdf.filter.ByteShuffleFilter

getName() - Method in class io.jhdf.filter.DeflatePipelineFilter

getName() - Method in interface io.jhdf.filter.Filter

Gets the name of this filter e.g.

getName() - Method in class io.jhdf.filter.FletcherChecksumFilter

getName() - Method in class io.jhdf.filter.LzfFilter

The name of this filter, "lzf

getName() - Method in class io.jhdf.HdfFile

getName() - Method in class io.jhdf.links.AbstractLink

getName() - Method in class io.jhdf.object.datatype.CompoundDataType.CompoundDataMember

getName() - Method in class io.jhdf.object.message.AttributeMessage

getName() - Method in class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

getNameHeapAddress() - Method in class io.jhdf.SymbolTableEntry

getNextHugeObjectId() - Method in class io.jhdf.FractalHeap

getNode() - Method in interface io.jhdf.api.Attribute

Gets the Node which contains this Attribute

getNode() - Method in class io.jhdf.AttributeImpl

getNodeSize() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getNumberOfEntries() - Method in class io.jhdf.GroupSymbolTableNode

getNumberOfHugeObjectsInHeap() - Method in class io.jhdf.FractalHeap

getNumberOfManagedObjectsInHeap() - Method in class io.jhdf.FractalHeap

getNumberOfTinyObjectsInHeap() - Method in class io.jhdf.FractalHeap

getObjectData(int) - Method in class io.jhdf.GlobalHeap

Gets the data buffer for an object in this global heap.

getObjectHeaderAddress() - Method in class io.jhdf.object.message.SharedMessage

getObjectHeaderAddress() - Method in class io.jhdf.SymbolTableEntry

getObjectReferenceCount(int) - Method in class io.jhdf.GlobalHeap

Gets the number of references to an object in this global heap.

getOffset() - Method in class io.jhdf.object.datatype.CompoundDataType.CompoundDataMember

getOffset() - Method in class io.jhdf.object.message.ObjectHeaderContinuationMessage

getOffsetOfDirectBlockAllocationIteratorInManagedSpace() - Method in class io.jhdf.FractalHeap

getOffsetToHeadOfFreeList() - Method in class io.jhdf.LocalHeap

getPaddingType() - Method in class io.jhdf.object.datatype.StringData

getPaddingType() - Method in class io.jhdf.object.datatype.VariableLength

getPageBits() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getParent() - Method in class io.jhdf.AbstractNode

getParent() - Method in interface io.jhdf.api.Node

Gets the Group which contains this Node i.e.

getParent() - Method in enum io.jhdf.dataset.NoParent

getParent() - Method in class io.jhdf.HdfFile

getParent() - Method in class io.jhdf.links.AbstractLink

getParent() - Method in class io.jhdf.object.datatype.VariableLength

getPath() - Method in class io.jhdf.AbstractNode

getPath() - Method in interface io.jhdf.api.Node

Gets the absolute path within the file of this node including the nodes name.

getPath() - Method in enum io.jhdf.dataset.NoParent

getPath() - Method in exception io.jhdf.exceptions.HdfInvalidPathException

getPath() - Method in class io.jhdf.GroupImpl

getPath() - Method in class io.jhdf.HdfFile

getPath() - Method in class io.jhdf.links.AbstractLink

getPipeline(FilterPipelineMessage) - Static method in enum io.jhdf.filter.FilterManager

Builds a new pipeline for decoding chunks from a FilterPipelineMessage.

getRawChunkBuffer(int[]) - Method in interface io.jhdf.api.dataset.ChunkedDataset

Gets the raw buffer for the specified chunk.

getRawChunkBuffer(int[]) - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

getRecords() - Method in class io.jhdf.btree.BTreeV2

getReferenceCount() - Method in class io.jhdf.object.message.ObjectReferenceCountMessage

getReferenceCount() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV1

getRightSiblingAddress() - Method in class io.jhdf.btree.BTreeV1

getRootGroupObjectHeaderAddress() - Method in class io.jhdf.Superblock.SuperblockV2V3

getRootGroupSymbolTableAddress() - Method in class io.jhdf.Superblock.SuperblockV0V1

getSignLocation() - Method in class io.jhdf.object.datatype.FloatingPoint

getSize() - Method in interface io.jhdf.api.Attribute

Gets the total number of elements in this attributes dataset.

getSize() - Method in interface io.jhdf.api.Dataset

Gets the total number of elements in this dataset.

getSize() - Method in class io.jhdf.AttributeImpl

getSize() - Method in interface io.jhdf.dataset.chunked.Chunk

Gets the size of this chink in bytes

getSize() - Method in class io.jhdf.dataset.chunked.indexing.ChunkImpl

getSize() - Method in class io.jhdf.dataset.DatasetBase

getSize() - Method in class io.jhdf.object.datatype.DataType

Gets the number of bytes used to represent each element

getSize() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessage

getSize() - Method in class io.jhdf.object.message.DataLayoutMessage.ContiguousDataLayoutMessage

getSizeInBytes() - Method in interface io.jhdf.api.Attribute

Gets the size of this dataset.

getSizeInBytes() - Method in interface io.jhdf.api.Dataset

Gets the size of this dataset.

getSizeInBytes() - Method in class io.jhdf.AttributeImpl

getSizeInBytes() - Method in class io.jhdf.dataset.DatasetBase

getSizeOfFilteredSingleChunk() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getSizeOfHugeObjectsInHeap() - Method in class io.jhdf.FractalHeap

getSizeOfLengths() - Method in interface io.jhdf.storage.HdfBackingStorage

getSizeOfLengths() - Method in class io.jhdf.storage.HdfFileChannel

getSizeOfLengths() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

getSizeOfLengths() - Method in class io.jhdf.Superblock

getSizeOfLengths() - Method in class io.jhdf.Superblock.SuperblockV0V1

getSizeOfLengths() - Method in class io.jhdf.Superblock.SuperblockV2V3

getSizeOfOffsets() - Method in interface io.jhdf.storage.HdfBackingStorage

getSizeOfOffsets() - Method in class io.jhdf.storage.HdfFileChannel

getSizeOfOffsets() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

getSizeOfOffsets() - Method in class io.jhdf.Superblock

getSizeOfOffsets() - Method in class io.jhdf.Superblock.SuperblockV0V1

getSizeOfOffsets() - Method in class io.jhdf.Superblock.SuperblockV2V3

getSizeOfTinyObjectsInHeap() - Method in class io.jhdf.FractalHeap

getSoftLink() - Method in class io.jhdf.object.message.LinkMessage

getSpaceAllocationTime() - Method in class io.jhdf.object.message.FillValueMessage

getSplitPercent() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

getStartingRowsInRootIndirectBlock() - Method in class io.jhdf.FractalHeap

getStorageInBytes() - Method in interface io.jhdf.api.Dataset

Gets the size of the storage used for this dataset in bytes.

getStorageInBytes() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

getStorageInBytes() - Method in class io.jhdf.dataset.DatasetBase

getStringPaddingHandler() - Method in class io.jhdf.object.datatype.StringData

getSuperblock() - Method in interface io.jhdf.storage.HdfBackingStorage

getSuperblock() - Method in class io.jhdf.storage.HdfFileChannel

getSuperblock() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

getSuperblockExtensionAddress() - Method in class io.jhdf.Superblock.SuperblockV2V3

getSymbolTableEntries() - Method in class io.jhdf.GroupSymbolTableNode

getTarget() - Method in interface io.jhdf.api.Link

Resolves the link and returns the Node the link points to.

getTarget() - Method in class io.jhdf.links.ExternalLink

getTarget() - Method in class io.jhdf.links.SoftLink

getTargetPath() - Method in interface io.jhdf.api.Link

Gets the path this link points to, obtaining it will not require the link to be resolved.

getTargetPath() - Method in class io.jhdf.links.ExternalLink

getTargetPath() - Method in class io.jhdf.links.SoftLink

getTotalLength() - Method in class io.jhdf.object.message.DataSpace

Gets the total number of elements in this dataspace.

getType() - Method in interface io.jhdf.api.Node

Gets the type of this Node.

getType() - Method in class io.jhdf.CommittedDatatype

getType() - Method in class io.jhdf.dataset.DatasetBase

getType() - Method in enum io.jhdf.dataset.NoParent

getType() - Method in class io.jhdf.GroupImpl

getType() - Method in class io.jhdf.HdfFile

getType() - Method in class io.jhdf.links.AbstractLink

getType() - Method in class io.jhdf.object.datatype.Reference

getType() - Method in class io.jhdf.object.datatype.VariableLength

getType() - Method in class io.jhdf.object.message.DataSpace

getUnixEpocSecond() - Method in class io.jhdf.object.message.ObjectModificationTimeMessage

getUserBlockBuffer() - Method in class io.jhdf.HdfFile

Gets the buffer containing the user block data.

getUserBlockSize() - Method in class io.jhdf.HdfFile

Gets the size of the user block of this file.

getUserBlockSize() - Method in interface io.jhdf.storage.HdfBackingStorage

getUserBlockSize() - Method in class io.jhdf.storage.HdfFileChannel

getUserBlockSize() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

getVersion() - Method in class io.jhdf.GroupSymbolTableNode

getVersion() - Method in class io.jhdf.LocalHeap

getVersion() - Method in class io.jhdf.object.datatype.DataType

getVersion() - Method in class io.jhdf.object.message.AttributeMessage

getVersion() - Method in class io.jhdf.object.message.DataSpace

getVersion() - Method in class io.jhdf.object.message.LinkInfoMessage

getVersion() - Method in class io.jhdf.object.message.LinkMessage

getVersion() - Method in class io.jhdf.ObjectHeader

getVersion() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV1

getVersion() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

getVersionNumberOfTheFileFreeSpaceInformation() - Method in class io.jhdf.Superblock.SuperblockV0V1

getVersionOfRootGroupSymbolTableEntry() - Method in class io.jhdf.Superblock.SuperblockV0V1

getVersionOfSharedHeaderMessageFormat() - Method in class io.jhdf.Superblock.SuperblockV0V1

getVersionOfSuperblock() - Method in class io.jhdf.Superblock

getVersionOfSuperblock() - Method in class io.jhdf.Superblock.SuperblockV0V1

getVersionOfSuperblock() - Method in class io.jhdf.Superblock.SuperblockV2V3

GlobalHeap - Class in io.jhdf

GlobalHeap(HdfBackingStorage, long) - Constructor for class io.jhdf.GlobalHeap

GlobalHeapId - Class in io.jhdf.dataset

GlobalHeapId(long, int) - Constructor for class io.jhdf.dataset.GlobalHeapId

Group - Interface in io.jhdf.api

HDF5 group.

GroupImpl - Class in io.jhdf

GroupInfoMessage - Class in io.jhdf.object.message

Group Info Message

GroupSymbolTableNode - Class in io.jhdf

GroupSymbolTableNode(HdfBackingStorage, long) - Constructor for class io.jhdf.GroupSymbolTableNode

H

hash(byte[]) - Static method in class io.jhdf.checksum.JenkinsLookup3HashLittle

Equivalent to JenkinsLookup3HashLittle.hash(byte[] bytes, int initialValue) with initialValue = 0

hash(ByteBuffer) - Static method in class io.jhdf.checksum.JenkinsLookup3HashLittle

Equivalent to JenkinsLookup3HashLittle.hash(ByteBuffer byteBuffer, int initialValue) with initialValue = 0

hash(byte[], int) - Static method in class io.jhdf.checksum.JenkinsLookup3HashLittle

The best hash table sizes are powers of 2.

hash(ByteBuffer, int) - Static method in class io.jhdf.checksum.JenkinsLookup3HashLittle

The best hash table sizes are powers of 2.

hashCode() - Method in class io.jhdf.dataset.chunked.ChunkOffset

hasMessageOfType(Class<T>) - Method in class io.jhdf.ObjectHeader

hdfBackingStorage - Variable in class io.jhdf.dataset.DatasetBase

HdfBackingStorage - Interface in io.jhdf.storage

Interface to underlying storage maybe an on disk file or an in memory file.

HdfBrokenLinkException - Exception in io.jhdf.exceptions

Thrown when a broken link is attempted to be resolved.

HdfBrokenLinkException(String, Throwable) - Constructor for exception io.jhdf.exceptions.HdfBrokenLinkException

HdfChecksumMismatchException - Exception in io.jhdf.exceptions

Exception to indicate and invalid checksum has been detected.

HdfChecksumMismatchException(int, int) - Constructor for exception io.jhdf.exceptions.HdfChecksumMismatchException

HdfException - Exception in io.jhdf.exceptions

Superclass of all exceptions thrown by jHDF.

HdfException(String) - Constructor for exception io.jhdf.exceptions.HdfException

HdfException(String, Throwable) - Constructor for exception io.jhdf.exceptions.HdfException

HdfFile - Class in io.jhdf

The HDF file class this object represents a HDF5 file on disk and provides methods to access it.

HdfFile(File) - Constructor for class io.jhdf.HdfFile

HdfFile(URI) - Constructor for class io.jhdf.HdfFile

HdfFile(Path) - Constructor for class io.jhdf.HdfFile

HdfFileChannel - Class in io.jhdf.storage

This wraps a FileChannel and combines it with the HDF5 Superblock.

HdfFileChannel(FileChannel, Superblock) - Constructor for class io.jhdf.storage.HdfFileChannel

HdfFilterException - Exception in io.jhdf.exceptions

Exception to be thrown when operations involving filters fail.

HdfFilterException(String) - Constructor for exception io.jhdf.exceptions.HdfFilterException

HdfFilterException(String, Throwable) - Constructor for exception io.jhdf.exceptions.HdfFilterException

HdfInMemoryByteBuffer - Class in io.jhdf.storage

HdfInMemoryByteBuffer(ByteBuffer, Superblock) - Constructor for class io.jhdf.storage.HdfInMemoryByteBuffer

HdfInvalidPathException - Exception in io.jhdf.exceptions

Thrown when a path inside a HDF5 file is invalid.

HdfInvalidPathException(String, Path) - Constructor for exception io.jhdf.exceptions.HdfInvalidPathException

HdfTypeException - Exception in io.jhdf.exceptions

HdfTypeException(String) - Constructor for exception io.jhdf.exceptions.HdfTypeException

header - Variable in class io.jhdf.AbstractNode

HugeFractalHeapObjectUnfilteredRecord - Class in io.jhdf.btree.record

HugeFractalHeapObjectUnfilteredRecord(ByteBuffer) - Constructor for class io.jhdf.btree.record.HugeFractalHeapObjectUnfilteredRecord

I

initialize() - Method in class io.jhdf.AbstractNode.AttributesLazyInitializer

initialize() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase.FilterPipelineLazyInitializer

inMemory() - Method in class io.jhdf.HdfFile

inMemory() - Method in interface io.jhdf.storage.HdfBackingStorage

inMemory() - Method in class io.jhdf.storage.HdfFileChannel

inMemory() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

InMemoryHdfException - Exception in io.jhdf.exceptions

Exception to be thrown if an operation is attempted on an in-memory file which only makes sense for a file backed file.

InMemoryHdfException() - Constructor for exception io.jhdf.exceptions.InMemoryHdfException

io.jhdf - package io.jhdf

io.jhdf.api - package io.jhdf.api

The API classes for accessing HDF5 files using the jHDF library.

io.jhdf.api.dataset - package io.jhdf.api.dataset

io.jhdf.btree - package io.jhdf.btree

B-tree classes

io.jhdf.btree.record - package io.jhdf.btree.record

B-Tree record classes

io.jhdf.checksum - package io.jhdf.checksum

io.jhdf.dataset - package io.jhdf.dataset

Dataset classes.

io.jhdf.dataset.chunked - package io.jhdf.dataset.chunked

Chunked dataset classes.

io.jhdf.dataset.chunked.indexing - package io.jhdf.dataset.chunked.indexing

io.jhdf.examples - package io.jhdf.examples

Examples for using the jHDF library.

io.jhdf.exceptions - package io.jhdf.exceptions

Exceptions thrown by the jHDF library.

io.jhdf.filter - package io.jhdf.filter

Support for HDF5 filters used when accessing chunked datasets.

io.jhdf.links - package io.jhdf.links

Classes implementing Link.

io.jhdf.object.datatype - package io.jhdf.object.datatype

Classes representing the data types of HDF5 datasets.

io.jhdf.object.message - package io.jhdf.object.message

Classes representing the messages within HDF5 object headers.

io.jhdf.storage - package io.jhdf.storage

isAlwaysFailOnUnknownType() - Method in class io.jhdf.object.message.Message

isAttributeCreationOrderIndexed() - Method in class io.jhdf.ObjectHeader

isAttributeCreationOrderIndexed() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV1

isAttributeCreationOrderIndexed() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

isAttributeCreationOrderTracked() - Method in class io.jhdf.AbstractNode

isAttributeCreationOrderTracked() - Method in interface io.jhdf.api.Node

If true the insertion order of attributes is tracked (recorded) in the file.

isAttributeCreationOrderTracked() - Method in enum io.jhdf.dataset.NoParent

isAttributeCreationOrderTracked() - Method in class io.jhdf.HdfFile

isAttributeCreationOrderTracked() - Method in class io.jhdf.links.AbstractLink

isAttributeCreationOrderTracked() - Method in class io.jhdf.ObjectHeader

isAttributeCreationOrderTracked() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV1

isAttributeCreationOrderTracked() - Method in class io.jhdf.ObjectHeader.ObjectHeaderV2

isBrokenLink() - Method in interface io.jhdf.api.Link

Checks if the link is valid i.e can be resolved.

isBrokenLink() - Method in class io.jhdf.links.AbstractLink

isCompound() - Method in interface io.jhdf.api.Dataset

Checks if this dataset is a compound dataset.

isCompound() - Method in class io.jhdf.dataset.DatasetBase

isEmpty() - Method in interface io.jhdf.api.Attribute

Checks if this dataset is empty i.e holds no data and no storage is allocated.

isEmpty() - Method in interface io.jhdf.api.Dataset

Checks if this dataset is empty i.e holds no data and no storage is allocated.

isEmpty() - Method in class io.jhdf.AttributeImpl

isEmpty() - Method in class io.jhdf.dataset.chunked.ChunkedDatasetBase

isEmpty() - Method in class io.jhdf.dataset.ContiguousDatasetImpl

isEmpty() - Method in class io.jhdf.dataset.DatasetBase

isFailOnUnknownTypeWithWrite() - Method in class io.jhdf.object.message.Message

isFillValueDefined() - Method in class io.jhdf.object.message.FillValueMessage

isFilteredSingleChunk() - Method in class io.jhdf.object.message.DataLayoutMessage.ChunkedDataLayoutMessageV4

isFlagToBeSetOnUnknownType() - Method in class io.jhdf.object.message.Message

isGroup() - Method in class io.jhdf.AbstractNode

isGroup() - Method in interface io.jhdf.api.Node

Checks if this Node is a Group.

isGroup() - Method in enum io.jhdf.dataset.NoParent

isGroup() - Method in class io.jhdf.HdfFile

isGroup() - Method in class io.jhdf.links.AbstractLink

isHighPadding() - Method in class io.jhdf.object.datatype.BitField

isHighPadding() - Method in class io.jhdf.object.datatype.FixedPoint

isHighPadding() - Method in class io.jhdf.object.datatype.FloatingPoint

isInternalPadding() - Method in class io.jhdf.object.datatype.FloatingPoint

isLink() - Method in class io.jhdf.AbstractNode

isLink() - Method in interface io.jhdf.api.Node

Checks if this Node is a Link.

isLink() - Method in enum io.jhdf.dataset.NoParent

isLink() - Method in class io.jhdf.HdfFile

isLink() - Method in class io.jhdf.links.AbstractLink

isLinkCreationOrderTracked() - Method in interface io.jhdf.api.Group

If true the insertion order of links into this Group is tracked (recorded) in the file.

isLinkCreationOrderTracked() - Method in enum io.jhdf.dataset.NoParent

isLinkCreationOrderTracked() - Method in class io.jhdf.GroupImpl

isLinkCreationOrderTracked() - Method in class io.jhdf.HdfFile

isLinkCreationOrderTracked() - Method in class io.jhdf.object.message.LinkInfoMessage

isLowPadding() - Method in class io.jhdf.object.datatype.BitField

isLowPadding() - Method in class io.jhdf.object.datatype.FixedPoint

isLowPadding() - Method in class io.jhdf.object.datatype.FloatingPoint

isMaxSizesPresent() - Method in class io.jhdf.object.message.DataSpace

isMessageDataConstant() - Method in class io.jhdf.object.message.Message

isMessageNotShared() - Method in class io.jhdf.object.message.Message

isMessageShareable() - Method in class io.jhdf.object.message.Message

isMessageShared() - Method in class io.jhdf.object.message.Message

isObjectModifiedWithoutUnderstandingOfThisMessage() - Method in class io.jhdf.object.message.Message

isOptional() - Method in class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

isScalar() - Method in interface io.jhdf.api.Attribute

Checks if this dataset is scalar i.e is a single element with no dimensions.

isScalar() - Method in interface io.jhdf.api.Dataset

Checks if this dataset is scalar i.e is a single element with no dimensions.

isScalar() - Method in class io.jhdf.AttributeImpl

isScalar() - Method in class io.jhdf.dataset.DatasetBase

isSigned() - Method in class io.jhdf.object.datatype.FixedPoint

isVariableLength() - Method in interface io.jhdf.api.Dataset

Checks if this dataset is a variable length dataset.

isVariableLength() - Method in class io.jhdf.dataset.DatasetBase

isVariableLengthString() - Method in class io.jhdf.object.datatype.VariableLength

iterator() - Method in enum io.jhdf.dataset.NoParent

iterator() - Method in class io.jhdf.GroupImpl

iterator() - Method in class io.jhdf.HdfFile

J

JenkinsLookup3HashLittle - Class in io.jhdf.checksum

Hash used for HDF5 consistency checking Java code inspired by the Bob Jenkins C code.

L

lazyPipeline - Variable in class io.jhdf.dataset.chunked.ChunkedDatasetBase

lazyReadObjectHeader(HdfBackingStorage, long) - Static method in class io.jhdf.ObjectHeader

linearIndexToDimensionIndex(int, int[]) - Static method in class io.jhdf.Utils

Link - Interface in io.jhdf.api

HDF5 links interface.

LinkInfoMessage - Class in io.jhdf.object.message

LinkMessage - Class in io.jhdf.object.message

LinkMessage.LinkType - Enum in io.jhdf.object.message

LinkNameForIndexedGroupRecord - Class in io.jhdf.btree.record

LinkNameForIndexedGroupRecord(ByteBuffer) - Constructor for class io.jhdf.btree.record.LinkNameForIndexedGroupRecord

LocalHeap - Class in io.jhdf

LocalHeap(HdfBackingStorage, long) - Constructor for class io.jhdf.LocalHeap

LzfFilter - Class in io.jhdf.filter

LzfFilter() - Constructor for class io.jhdf.filter.LzfFilter

M

main(String[]) - Static method in class io.jhdf.examples.PrintTree

main(String[]) - Static method in class io.jhdf.examples.RawChunkAccess

main(String[]) - Static method in class io.jhdf.examples.ReadAttribute

main(String[]) - Static method in class io.jhdf.examples.ReadDataset

map(long, long) - Method in interface io.jhdf.storage.HdfBackingStorage

map(long, long) - Method in class io.jhdf.storage.HdfFileChannel

map(long, long) - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

mapNoOffset(long, long) - Method in interface io.jhdf.storage.HdfBackingStorage

mapNoOffset(long, long) - Method in class io.jhdf.storage.HdfFileChannel

mapNoOffset(long, long) - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

Message - Class in io.jhdf.object.message

Message(BitSet) - Constructor for class io.jhdf.object.message.Message

messages - Variable in class io.jhdf.ObjectHeader

The messages contained in this object header

N

name - Variable in class io.jhdf.AbstractNode

name - Variable in class io.jhdf.links.AbstractLink

NilMessage - Class in io.jhdf.object.message

Nil (Null) Message

Node - Interface in io.jhdf.api

Represents all objects contained in a HDF5 file

NodeType - Enum in io.jhdf.api

NonFilteredDatasetChunks - Class in io.jhdf.btree.record

Version 2 B-tree, Type 10 Record Layout - Non-filtered Dataset Chunks

NonFilteredDatasetChunks(ByteBuffer, DatasetInfo) - Constructor for class io.jhdf.btree.record.NonFilteredDatasetChunks

NoParent - Enum in io.jhdf.dataset

A placeholder for a Group to use when the group of a Dataset is not known because it is specified by a Reference.

NULL - Static variable in class io.jhdf.Constants

O

ObjectCommentMessage - Class in io.jhdf.object.message

Object Comment Message

ObjectHeader - Class in io.jhdf

ObjectHeader(long) - Constructor for class io.jhdf.ObjectHeader

ObjectHeader.ObjectHeaderV1 - Class in io.jhdf

ObjectHeader.ObjectHeaderV2 - Class in io.jhdf

The Object Header V2

ObjectHeaderContinuationMessage - Class in io.jhdf.object.message

Object Header Continuation Message

ObjectModificationTimeMessage - Class in io.jhdf.object.message

Object Modification Time Message

ObjectReferenceCountMessage - Class in io.jhdf.object.message

ObjectReferenceCountMessage(ByteBuffer, BitSet) - Constructor for class io.jhdf.object.message.ObjectReferenceCountMessage

oh - Variable in class io.jhdf.dataset.DatasetBase

OldObjectModificationTimeMessage - Class in io.jhdf.object.message

Old Object Modification Time Message

OldObjectModificationTimeMessage(ByteBuffer, BitSet) - Constructor for class io.jhdf.object.message.OldObjectModificationTimeMessage

OpaqueDataType - Class in io.jhdf.object.datatype

Class for reading opaque data type (HDF5 type 5).

OpaqueDataType(ByteBuffer) - Constructor for class io.jhdf.object.datatype.OpaqueDataType

OrderedDataType - Interface in io.jhdf.object.datatype

P

parent - Variable in class io.jhdf.AbstractNode

parent - Variable in class io.jhdf.links.AbstractLink

PATH_SEPARATOR - Static variable in class io.jhdf.Constants

PrintTree - Class in io.jhdf.examples

An example of recursively parsing a HDF5 file tree and printing it to the console.

PrintTree() - Constructor for class io.jhdf.examples.PrintTree

R

RawChunkAccess - Class in io.jhdf.examples

Example application for raw chunk access from HDF5

RawChunkAccess() - Constructor for class io.jhdf.examples.RawChunkAccess

ReadAttribute - Class in io.jhdf.examples

Example application for reading an attribute from HDF5

ReadAttribute() - Constructor for class io.jhdf.examples.ReadAttribute

readBufferFromAddress(long, int) - Method in interface io.jhdf.storage.HdfBackingStorage

readBufferFromAddress(long, int) - Method in class io.jhdf.storage.HdfFileChannel

Reads from the HDF file into a ByteBuffer.

readBufferFromAddress(long, int) - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

readBytesAsUnsignedInt(ByteBuffer, int) - Static method in class io.jhdf.Utils

This reads the requested number of bytes from the buffer and returns the data as an unsigned int.

readBytesAsUnsignedLong(ByteBuffer, int) - Static method in class io.jhdf.Utils

This reads the requested number of bytes from the buffer and returns the data as an unsigned long.

readDataset(CompoundDataType, ByteBuffer, int[], HdfBackingStorage) - Static method in class io.jhdf.dataset.CompoundDatasetReader

readDataset(DataType, ByteBuffer, int[], HdfBackingStorage) - Static method in class io.jhdf.dataset.DatasetReader

This converts a buffer into a Java object representing this dataset.

readDataset(VariableLength, ByteBuffer, int[], HdfBackingStorage) - Static method in class io.jhdf.dataset.VariableLengthDatasetReader

ReadDataset - Class in io.jhdf.examples

Example application for reading a dataset from HDF5

ReadDataset() - Constructor for class io.jhdf.examples.ReadDataset

readDataSpace(ByteBuffer, Superblock) - Static method in class io.jhdf.object.message.DataSpace

readDataType(ByteBuffer) - Static method in class io.jhdf.object.datatype.DataType

readEnumDataset(EnumDataType, ByteBuffer, int[]) - Static method in class io.jhdf.dataset.EnumDatasetReader

readHeaderAndValidateSignature(HdfBackingStorage, long) - Static method in class io.jhdf.btree.BTreeV1

readObjectHeader(HdfBackingStorage, long) - Static method in class io.jhdf.ObjectHeader

readObjectHeaderV1Message(ByteBuffer, HdfBackingStorage) - Static method in class io.jhdf.object.message.Message

readObjectHeaderV2Message(ByteBuffer, HdfBackingStorage, boolean) - Static method in class io.jhdf.object.message.Message

readRecord(int, ByteBuffer, DatasetInfo) - Static method in class io.jhdf.btree.record.BTreeRecord

readSuperblock(FileChannel, long) - Static method in class io.jhdf.Superblock

readSuperblock(ByteBuffer) - Static method in class io.jhdf.Superblock

readUntilNull(ByteBuffer) - Static method in class io.jhdf.Utils

Reads ASCII string from the buffer until a null character is reached.

Reference - Class in io.jhdf.object.datatype

Class to represent a Reference data type.

Reference(ByteBuffer) - Constructor for class io.jhdf.object.datatype.Reference

Reference.ReferenceType - Enum in io.jhdf.object.datatype

S

seekBufferToNextMultipleOfEight(ByteBuffer) - Static method in class io.jhdf.Utils

Moves the position of the ByteBuffer to the next position aligned on 8 bytes.

setBufferLimit(ByteBuffer) - Method in interface io.jhdf.object.datatype.StringData.StringPaddingHandler

SharedMessage - Class in io.jhdf.object.message

Shared Message

SharedMessage(ByteBuffer, Superblock) - Constructor for class io.jhdf.object.message.SharedMessage

SingleChunkIndex - Class in io.jhdf.dataset.chunked.indexing

SingleChunkIndex(DataLayoutMessage.ChunkedDataLayoutMessageV4, DatasetInfo) - Constructor for class io.jhdf.dataset.chunked.indexing.SingleChunkIndex

size() - Method in class io.jhdf.HdfFile

Returns the size of this HDF5 file.

size() - Method in interface io.jhdf.storage.HdfBackingStorage

size() - Method in class io.jhdf.storage.HdfFileChannel

size() - Method in class io.jhdf.storage.HdfInMemoryByteBuffer

SoftLink - Class in io.jhdf.links

Soft (symbolic) link to another Node in the HDF5 file.

SoftLink(String, String, Group) - Constructor for class io.jhdf.links.SoftLink

SPACE - Static variable in class io.jhdf.Constants

StringData - Class in io.jhdf.object.datatype

Data type representing strings.

StringData(ByteBuffer) - Constructor for class io.jhdf.object.datatype.StringData

StringData.PaddingType - Enum in io.jhdf.object.datatype

StringData.StringPaddingHandler - Interface in io.jhdf.object.datatype

stripLeadingIndex(int[]) - Static method in class io.jhdf.Utils

Removes the zeroth (leading) index.

Superblock - Class in io.jhdf

Superblock() - Constructor for class io.jhdf.Superblock

Superblock.SuperblockV0V1 - Class in io.jhdf

Superblock.SuperblockV2V3 - Class in io.jhdf

SuperblockV2V3(ByteBuffer, byte) - Constructor for class io.jhdf.Superblock.SuperblockV2V3

SymbolTableEntry - Class in io.jhdf

SymbolTableEntry(HdfBackingStorage, long) - Constructor for class io.jhdf.SymbolTableEntry

SymbolTableMessage - Class in io.jhdf.object.message

Symbol Table Message

T

targetNode - Variable in class io.jhdf.links.AbstractLink

toFloat(short) - Static method in class io.jhdf.object.datatype.FloatingPoint

This method converts 2 bytes (represented as a short) into a half precision float (represented by the java full precision float).

toHex(long) - Static method in class io.jhdf.Utils

Converts an address to a hex string for display

toString() - Method in class io.jhdf.btree.BTreeV2

toString() - Method in class io.jhdf.dataset.chunked.ChunkOffset

toString() - Method in class io.jhdf.dataset.chunked.indexing.ChunkImpl

toString() - Method in class io.jhdf.dataset.DatasetBase

toString() - Method in class io.jhdf.filter.FilterPipeline

toString() - Method in class io.jhdf.FractalHeap

toString() - Method in class io.jhdf.GlobalHeap

toString() - Method in class io.jhdf.GroupImpl

toString() - Method in class io.jhdf.GroupSymbolTableNode

toString() - Method in class io.jhdf.HdfFile

toString() - Method in class io.jhdf.links.ExternalLink

toString() - Method in class io.jhdf.links.SoftLink

toString() - Method in class io.jhdf.LocalHeap

toString() - Method in class io.jhdf.object.datatype.StringData

toString() - Method in class io.jhdf.object.message.AttributeMessage

toString() - Method in class io.jhdf.object.message.FilterPipelineMessage.FilterInfo

toString() - Method in class io.jhdf.SymbolTableEntry

U

UNDEFINED_ADDRESS - Static variable in class io.jhdf.Constants

All bits on

UnsupportedHdfException - Exception in io.jhdf.exceptions

UnsupportedHdfException(String) - Constructor for exception io.jhdf.exceptions.UnsupportedHdfException

Utils - Class in io.jhdf

V

validateChecksum(ByteBuffer) - Static method in class io.jhdf.checksum.ChecksumUtils

Checks the last 4 bytes of the buffer are the the Jenkins Lookup 3 Checksum of the rest of the buffer.

validateName(String) - Static method in class io.jhdf.Utils

Check the provided name to see if it is valid for a HDF5 identifier.

valueOf(String) - Static method in enum io.jhdf.api.NodeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.dataset.NoParent

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.filter.FilterManager

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.object.datatype.Reference.ReferenceType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.object.datatype.StringData.PaddingType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.object.message.DataLayout

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum io.jhdf.object.message.LinkMessage.LinkType

Returns the enum constant of this type with the specified name.

values() - Static method in enum io.jhdf.api.NodeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.dataset.NoParent

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.filter.FilterManager

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.object.datatype.Reference.ReferenceType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.object.datatype.StringData.PaddingType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.object.message.DataLayout

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum io.jhdf.object.message.LinkMessage.LinkType

Returns an array containing the constants of this enum type, in the order they are declared.

VariableLength - Class in io.jhdf.object.datatype

VariableLength(ByteBuffer) - Constructor for class io.jhdf.object.datatype.VariableLength

VariableLengthDatasetReader - Class in io.jhdf.dataset

A B C D E F G H I J L M N O P R S T U V