nextflow.script (nextflow 0.28.2 API)

Interface Summary
Interface	Description
InParam	Basic interface for all input parameters
OutParam	Model a process generic input parameter
OutParam.Mode

Trait Summary
Trait	Description
MissingParam	Placeholder trait to mark a missing optional output parameter
OptionalParam	Implements an optional file output option

Class Summary
Class	Description
BaseInParam	Model a process generic input parameter
BaseOutParam
BaseParam	Base class for input/output parameters
BaseScript	Any user defined script will extends this class, it provides the base execution context
DefaultInParam
DefaultOutParam
EachInParam	Represents a process input iterator parameter
EnvInParam	Represents a process environment input parameter
FileInParam	Represents a process file input parameter
FileOutParam	Model a process file output parameter
InputsList	Container to hold all process outputs
OutputsList	Container to hold all process outputs
ScriptBinding	Defines the script execution context.
ScriptBinding.ParamsMap	Holds parameter immutable values
ScriptFile	Runnable pipeline script file
ScriptRunner	Application main class
ScriptRunner.ArgsList	Extends an `ArrayList` class adding a nicer index-out-of-range error message
SetInParam
SetOutParam
StdInParam	Represents a process stdin input parameter
StdOutParam	Model the process stdout parameter
TaskBody	Holds process script meta-data
TaskClosure	Extends a groovy.lang.Closure class adding the source attribute
TokenEnvCall	Token used by the DSL to identify a environment variable declaration, like this input: set( env(X), ... )
TokenFileCall	A token used by the DSL to identify a 'file' declaration in a 'set' parameter, for example: input: set( file('name'), ... )
TokenStdinCall	An object of this class replace the `stdin` token in input map declaration.
TokenStdoutCall	An object of this class replace the `stdout` token in input map declaration.
TokenValCall	This class is used to identify a 'val' when used like in this example: input: set ( val(x), ... )
TokenValRef
TokenVar	Presents a variable definition in the script context.
ValueInParam	Represents a process value input parameter
ValueOutParam	Model a process value output parameter
WorkflowMetadata	Models workflow metadata properties and notification handler
WorkflowNotifier	Send workflow completion notification

Enum Summary
Enum	Description
BasicMode
ScriptType	The type of script declared by a process
SetOutParam.CombineMode

Package nextflow.script