nextflow.script (nextflow 20.01.1 API)

Interface Summary
Interface	Description
ChainableDef	An executable component i.e. a process or a workflow
ExecutionContext	Marks a workflow component context aware i.e. holding its own context binding object

Class Summary
Class	Description
BaseScript	Any user defined script will extends this class, it provides the base execution context
BindableDef	Abstract module component which bind itself in the current execution context once executed
BodyDef	Holds process script meta-data
ChannelOut	Models the output of a process or a workflow component returning more than one output channels
ComponentDef	Models an abstract module component i.e. functions, processes or (sub)workflow
CompositeDef	Models a composition of process and workflow components in a pipe operation expression
ExecutionStack	Holds the current execution context
FunctionDef	Models a function component that can be included from a module script
IncludeDef	Implements a script inclusion
IncludeDef.Module
ProcessConfig	Holds the process configuration properties
ProcessDef	Models a nextflow process definition
ProcessFactory	Factory class for {@TaskProcessor} instances
ScriptBinding	Defines the script execution context.
ScriptBinding.ParamsMap	Holds parameter immutable values
ScriptFile	Runnable pipeline script file
ScriptMeta	Holds a nextflow script meta-data such as the defines processes and workflows, the included modules the script path, etc.
ScriptParser	Parse a nextflow script class applied the required AST transformations
ScriptRunner	Run a nextflow script file
ScriptRunner.ArgsList	Extends an `ArrayList` class adding a nicer index-out-of-range error message
TaskClosure	Extends a groovy.lang.Closure class adding the source attribute
TokenBranchChoice
TokenBranchDef
TokenEnvCall	Token used by the DSL to identify a environment variable declaration, like this input: set( env(X), ... )
TokenFileCall	A token used by the DSL to identify a 'file' declaration in a 'set' parameter, for example: input: set( file('name'), ... )
TokenMultiMapDef
TokenPathCall	A token used by the DSL to identify a 'path' declaration in a 'set' parameter, for example: input: set( path('name'), ... )
TokenStdinCall	An object of this class replace the `stdin` token in input map declaration.
TokenStdoutCall	An object of this class replace the `stdout` token in input map declaration.
TokenValCall	This class is used to identify a 'val' when used like in this example: input: set ( val(x), ... )
TokenValRef
TokenVar	Presents a variable definition in the script context.
WorkflowBinding	Models the execution context of a workflow component
WorkflowDef	Models a script workflow component
WorkflowMetadata	Models workflow metadata properties and notification handler
WorkflowNotifier	Send workflow completion notification
WorkflowParamsResolver	Hold workflow parameters

Enum Summary
Enum	Description
ScriptType	The type of script declared by a process

Package nextflow.script