- c2hex(Color) - Static method in class ij.util.Tools
-
Converts a Color to an 7 byte hex string starting with '#'.
- C_POSITION - Static variable in class ij.io.RoiDecoder
-
- cachedMask - Variable in class ij.gui.Roi
-
- cal - Variable in class ij.gui.HistogramWindow
-
- cal - Variable in class ij.process.ImageStatistics
-
- calculate(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
-
- calculateDistance(int, int, int, int) - Static method in class ij.gui.Plot
-
- CALCULATOR - Static variable in interface ij.macro.MacroConstants
-
- CALIBRATE - Static variable in interface ij.macro.MacroConstants
-
- calibrate(ImagePlus) - Method in class ij.plugin.filter.Calibrator
-
Calibrate an image with the function type defined previously.
- calibrated() - Method in class ij.measure.Calibration
-
Returns true if this image is density calibrated.
- Calibration - Class in ij.measure
-
Calibration objects contain an image's spatial and density calibration data.
- Calibration(ImagePlus) - Constructor for class ij.measure.Calibration
-
Constructs a new Calibration object using the default values.
- Calibration() - Constructor for class ij.measure.Calibration
-
Constructs a new Calibration object using the default values.
- CalibrationBar - Class in ij.plugin
-
This plugin implements the Analyze/Tools/Calibration Bar command.
- CalibrationBar() - Constructor for class ij.plugin.CalibrationBar
-
- calibrationFunction - Variable in class ij.io.FileInfo
-
- Calibrator - Class in ij.plugin.filter
-
Implements the Analyze/Calibrate command.
- Calibrator() - Constructor for class ij.plugin.filter.Calibrator
-
- CALL - Static variable in interface ij.macro.MacroConstants
-
- CANCELED - Static variable in class ij.IJ
-
- cancelPressed() - Method in class ij.gui.SaveChangesDialog
-
Returns true if the user dismissed dialog by pressing "Cancel".
- cancelPressed() - Method in class ij.gui.YesNoCancelDialog
-
Returns true if the user dismissed dialog by pressing "Cancel".
- canEnlarge(int, int) - Method in class ij.gui.ImageCanvas
-
Returns the size to which the window can be enlarged, or null if it can't be enlarged.
- CanvasResizer - Class in ij.plugin
-
This plugin implements the Image/Adjust/Canvas Size command.
- CanvasResizer() - Constructor for class ij.plugin.CanvasResizer
-
- captureImage() - Method in class ij.plugin.ScreenGrabber
-
Captures the active image window and returns it as an ImagePlus.
- captureScreen() - Method in class ij.plugin.ScreenGrabber
-
Captures the entire screen and returns it as an ImagePlus.
- caSnapshot(boolean) - Method in class ij.process.ColorProcessor
-
Used by the ContrastAdjuster
- caSnapshot() - Method in class ij.process.ColorProcessor
-
Used by the ContrastAdjuster
- cChannel - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- cCoords - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- cCursor - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- center(Window, Component) - Static method in class ij.gui.GUI
-
Positions the specified window in the center of the screen that contains target.
- center(Window) - Static method in class ij.gui.GUI
-
- CENTER - Static variable in class ij.gui.Plot
-
Text justification.
- center - Variable in class ij.gui.Roi
-
- CENTER - Static variable in class ij.gui.TextRoi
-
- CENTER_JUSTIFY - Static variable in class ij.process.ImageProcessor
-
Center justify text.
- CENTER_OF_MASS - Static variable in interface ij.measure.Measurements
-
- centerDialog(boolean) - Method in class ij.gui.GenericDialog
-
Display dialog centered on the primary screen.
- centerNextImage() - Static method in class ij.gui.ImageWindow
-
Causes the next image to be opened to be centered on the screen
and displayed without informational text above the image.
- centerOnImageJScreen(Window) - Static method in class ij.gui.GUI
-
Positions the specified window in the center of the
screen containing the "ImageJ" window.
- CENTROID - Static variable in interface ij.measure.Measurements
-
- cFrame - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- CHANGE_VALUES - Static variable in interface ij.macro.MacroConstants
-
- changeFont(Font) - Method in class ij.gui.Plot
-
- changeFont(Font) - Method in class ij.gui.PlotWindow
-
- changes - Variable in class ij.ImagePlus
-
True if any changes have been made to this image.
- changes - Variable in class ij.plugin.frame.Editor
-
- CHANNEL - Static variable in class ij.measure.ResultsTable
-
- ChannelArranger - Class in ij.plugin
-
This plugin implements the Image/Colors/Arrange Channels command,
which allows the user to change the order of channels.
- ChannelArranger() - Constructor for class ij.plugin.ChannelArranger
-
- channelLuts - Variable in class ij.io.FileInfo
-
- Channels - Class in ij.plugin.frame
-
Displays the ImageJ Channels window.
- Channels() - Constructor for class ij.plugin.frame.Channels
-
- ChannelSplitter - Class in ij.plugin
-
This plugin implements the Image/Color/Split Channels command.
- ChannelSplitter() - Constructor for class ij.plugin.ChannelSplitter
-
- CHAPMAN - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- CHAR_CODE_AT - Static variable in interface ij.macro.MacroConstants
-
- CHECK_AVAILABLE_MEMORY - Static variable in class ij.gui.NewImage
-
- checkArguments(Object[]) - Method in class ij.macro.ExtensionDescriptor
-
- checkbox - Variable in class ij.gui.GenericDialog
-
- checkForDuplicateName - Static variable in class ij.WindowManager
-
- choice - Variable in class ij.gui.GenericDialog
-
- chromaD50 - Variable in class ij.process.ColorSpaceConverter
-
reference white in xyY coordinates
- chromaD55 - Variable in class ij.process.ColorSpaceConverter
-
- chromaD65 - Variable in class ij.process.ColorSpaceConverter
-
- chromaD75 - Variable in class ij.process.ColorSpaceConverter
-
- chromaWhitePoint - Variable in class ij.process.ColorSpaceConverter
-
- CIRCLE - Static variable in class ij.gui.Plot
-
Display points using a circle (5 pixels in diameter if line thickness<=1, otherwise 7).
- CIRCLE - Static variable in class ij.gui.PlotWindow
-
Deprecated.
- CIRCULARITY - Static variable in interface ij.measure.Measurements
-
- CIRCULARITY - Static variable in class ij.measure.ResultsTable
-
- CircularRoiMaker - Class in ij.plugin
-
This class implements the Process/FFT/Make Circular Selection command.
- CircularRoiMaker() - Constructor for class ij.plugin.CircularRoiMaker
-
- ClassChecker - Class in ij.plugin
-
Checks for duplicate class and JAR files in the plugins folders and deletes older duplicates.
- ClassChecker() - Constructor for class ij.plugin.ClassChecker
-
- clear() - Method in class ij.gui.Overlay
-
Removes all the ROIs in this Overlay.
- clear(ImageProcessor) - Method in class ij.gui.TextRoi
-
- clear(ImageProcessor) - Method in class ij.plugin.filter.Filler
-
- clear() - Method in class ij.text.TextPanel
-
Deletes all the lines.
- clear() - Method in class ij.util.FloatArray
-
Removes all elements form this FloatArray.
- CLEAR_WORKSHEET - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Clear "Results" window before starting.
- clearOutside(ImageProcessor) - Method in class ij.plugin.filter.Filler
-
- clearSelection() - Method in class ij.text.TextPanel
-
Deletes the selected lines.
- clipboard - Variable in class ij.gui.Roi
-
- Clipboard - Class in ij.plugin
-
Copies/pastes images to/from the system clipboard.
- Clipboard() - Constructor for class ij.plugin.Clipboard
-
- clipHeight - Variable in class ij.gui.Roi
-
- clipRectMargin() - Method in class ij.gui.Arrow
-
- clipRectMargin() - Method in class ij.gui.Line
-
- clipRectMargin() - Method in class ij.gui.PolygonRoi
-
- clipRectMargin() - Method in class ij.gui.Roi
-
- clipWidth - Variable in class ij.gui.Roi
-
- clipX - Variable in class ij.gui.Roi
-
- clipXMax - Variable in class ij.process.ImageProcessor
-
- clipXMin - Variable in class ij.process.ImageProcessor
-
- clipY - Variable in class ij.gui.Roi
-
- clipYMax - Variable in class ij.process.ImageProcessor
-
- clipYMin - Variable in class ij.process.ImageProcessor
-
- clone() - Method in class ij.gui.ImageRoi
-
- clone() - Method in class ij.gui.PointRoi
-
Returns a copy of this PointRoi.
- clone() - Method in class ij.gui.PolygonRoi
-
Returns a copy of this PolygonRoi.
- clone() - Method in class ij.gui.Roi
-
Returns a copy of this roi.
- clone() - Method in class ij.gui.ShapeRoi
-
Returns a deep copy of this.
- clone() - Method in class ij.gui.TextRoi
-
Returns a copy of this TextRoi.
- clone() - Method in class ij.ImagePlus
-
Returns a shallow copy of this ImagePlus.
- clone() - Method in class ij.io.FileInfo
-
- clone() - Method in class ij.macro.Variable
-
- clone() - Method in class ij.measure.Calibration
-
- clone() - Method in class ij.measure.ResultsTable
-
Duplicates this ResultsTable.
- clone() - Method in class ij.process.ImageProcessor
-
Returns a shallow copy of this ImageProcessor, where this
image and the copy share pixel data.
- clone() - Method in class ij.process.LUT
-
- close() - Method in class ij.CompositeImage
-
- close() - Method in class ij.gui.ImageWindow
-
Removes this window from the window list and disposes of it.
- close() - Method in class ij.gui.StackWindow
-
- close() - Method in class ij.gui.WaitForUserDialog
-
- close() - Method in class ij.ImagePlus
-
Closes this image and sets the ImageProcessor to null.
- close() - Method in class ij.io.LogStream
-
- close() - Method in class ij.io.RandomAccessStream
-
- close() - Method in class ij.macro.FunctionFinder
-
- CLOSE - Static variable in interface ij.macro.MacroConstants
-
- CLOSE - Static variable in class ij.plugin.filter.RankFilters
-
- close() - Method in class ij.plugin.frame.Channels
-
- close() - Method in class ij.plugin.frame.ColorPicker
-
- close() - Method in class ij.plugin.frame.ColorThresholder
-
- close() - Method in class ij.plugin.frame.ContrastAdjuster
-
Overrides close() in PlugInDialog.
- close() - Method in class ij.plugin.frame.Editor
-
Overrides close() in PlugInFrame.
- close() - Method in class ij.plugin.frame.LineWidthAdjuster
-
Overrides close() in PlugInFrame.
- close() - Method in class ij.plugin.frame.MemoryMonitor
-
- close() - Method in class ij.plugin.frame.PasteController
-
- close() - Method in class ij.plugin.frame.PlugInDialog
-
Closes this window.
- close() - Method in class ij.plugin.frame.PlugInFrame
-
Closes this window.
- close() - Method in class ij.plugin.frame.Recorder
-
- close() - Method in class ij.plugin.frame.RoiManager
-
Overrides PlugInFrame.close().
- close() - Method in class ij.plugin.frame.SyncWindows
-
- close() - Method in class ij.plugin.frame.ThresholdAdjuster
-
Overrides close() in PlugInFrame.
- close() - Method in class ij.text.TextWindow
-
- close(boolean) - Method in class ij.text.TextWindow
-
Closes this TextWindow.
- closeAll() - Static method in class ij.plugin.Commands
-
Closes all image windows, or returns 'false' if the user cancels the unsaved changes dialog box.
- closeAllWindows() - Static method in class ij.WindowManager
-
Closes all windows.
- closeAndRefocus() - Method in class ij.macro.FunctionFinder
-
- closed - Variable in class ij.gui.ImageWindow
-
- CLOSED - Static variable in class ij.ImagePlus
-
- closingAll - Static variable in class ij.Prefs
-
"Close All" command running
- cm - Variable in class ij.process.ImageProcessor
-
- cm2 - Variable in class ij.process.ImageProcessor
-
- CMYK - Static variable in class ij.io.FileInfo
-
32-bit interleaved CMYK.
- coefficients - Variable in class ij.io.FileInfo
-
- COLOR - Static variable in class ij.CompositeImage
-
Display modes (note: TRANSPARENT mode has not yet been implemented)
- COLOR - Static variable in class ij.IJ
-
Image display modes
- COLOR8 - Static variable in class ij.io.FileInfo
-
8-bit unsigned integer with color lookup table.
- COLOR_256 - Static variable in class ij.ImagePlus
-
8-bit indexed color
- COLOR_MAP - Static variable in class ij.io.TiffDecoder
-
- COLOR_PICKER_CLOSED - Static variable in interface ij.IJEventListener
-
- COLOR_RGB - Static variable in class ij.ImagePlus
-
32-bit RGB color
- ColorBlitter - Class in ij.process
-
This class does bit blitting of RGB images.
- ColorBlitter(ColorProcessor) - Constructor for class ij.process.ColorBlitter
-
Constructs a ColorBlitter from a ColorProcessor.
- ColorChooser - Class in ij.gui
-
Displays a dialog that allows the user to select a color using three sliders.
- ColorChooser(String, Color, boolean) - Constructor for class ij.gui.ColorChooser
-
Constructs a ColorChooser using the specified title and initial color.
- ColorChooser(String, Color, boolean, Frame) - Constructor for class ij.gui.ColorChooser
-
- ColorPicker - Class in ij.plugin.frame
-
Implements the Image/Color/Color Picker command.
- ColorPicker() - Constructor for class ij.plugin.frame.ColorPicker
-
- ColorProcessor - Class in ij.process
-
This is an 32-bit RGB image and methods that operate on that image..
- ColorProcessor(Image) - Constructor for class ij.process.ColorProcessor
-
Creates a ColorProcessor from an AWT Image or BufferedImage.
- ColorProcessor(int, int) - Constructor for class ij.process.ColorProcessor
-
Creates a blank ColorProcessor of the specified dimensions.
- ColorProcessor(int, int, int[]) - Constructor for class ij.process.ColorProcessor
-
Creates a ColorProcessor from a pixel array.
- Colors - Class in ij.plugin
-
This plugin implements most of the Edit/Options/Colors command.
- Colors() - Constructor for class ij.plugin.Colors
-
- colors - Static variable in class ij.plugin.Colors
-
- ColorSpaceConverter - Class in ij.process
-
ColorSpaceConverter
- ColorSpaceConverter() - Constructor for class ij.process.ColorSpaceConverter
-
Default constructor; uses D65 for the white point
- ColorSpaceConverter(String) - Constructor for class ij.process.ColorSpaceConverter
-
Constructor for setting a non-default white point
- ColorStatistics - Class in ij.process
-
RGB image statistics, including histogram.
- ColorStatistics(ImageProcessor) - Constructor for class ij.process.ColorStatistics
-
Construct an ImageStatistics object from a ColorProcessor
using the standard measurement options (area, mean,
mode, min and max).
- ColorStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ColorStatistics
-
Constructs a ColorStatistics object from a ColorProcessor using
the specified measurement options.
- ColorThresholder - Class in ij.plugin.frame
-
Selects pixels according to hsb or rgb components.
- ColorThresholder() - Constructor for class ij.plugin.frame.ColorThresholder
-
- colorToString(Color) - Static method in class ij.plugin.Colors
-
Converts a Color into a string ("red", "green", #aa55ff, etc.).
- colorToString2(Color) - Static method in class ij.plugin.Colors
-
Converts a Color into a string ("Red", "Green", #aa55ff, etc.).
- COLUMN_IN_USE - Static variable in class ij.measure.ResultsTable
-
- COLUMN_NOT_FOUND - Static variable in class ij.measure.ResultsTable
-
- columnDeleted() - Method in class ij.measure.ResultsTable
-
- columnExists(int) - Method in class ij.measure.ResultsTable
-
Returns true if the specified column exists and is not empty.
- columnExists(String) - Method in class ij.measure.ResultsTable
-
Returns 'true' if the specified column exists and is not emptly.
- combineHorizontally(ImageStack, ImageStack) - Method in class ij.plugin.StackCombiner
-
- combineVertically(ImageStack, ImageStack) - Method in class ij.plugin.StackCombiner
-
- COMMAND_IN_USE - Static variable in class ij.Menus
-
- COMMAND_NOT_FOUND - Static variable in class ij.Menus
-
- commandExecuting(String) - Method in interface ij.CommandListener
-
- commandExecuting(String) - Method in class ij.plugin.EventListener
-
- commandExecuting(String) - Method in class ij.plugin.frame.SyncWindows
-
- commandExecuting(String) - Method in class ij.plugin.Orthogonal_Views
-
- CommandFinder - Class in ij.plugin
-
- CommandFinder() - Constructor for class ij.plugin.CommandFinder
-
- commandInUse(String) - Static method in class ij.Menus
-
- CommandListener - Interface in ij
-
Plugins that implement this interface are notified when ImageJ
is about to run a menu command.
- CommandLister - Class in ij.plugin
-
This class is used by the Plugins/Shortcuts/List Shortcuts
command to display a list keyboard shortcuts.
- CommandLister() - Constructor for class ij.plugin.CommandLister
-
- commandPrefix - Static variable in class ij.plugin.MacroInstaller
-
- Commands - Class in ij.plugin
-
Runs miscellaneous File and Window menu commands.
- Commands() - Constructor for class ij.plugin.Commands
-
- Compiler - Class in ij.plugin
-
Compiles and runs plugins using the javac compiler.
- Compiler() - Constructor for class ij.plugin.Compiler
-
- COMPLETED - Static variable in interface ij.gui.RoiListener
-
- completeReset() - Method in class ij.CompositeImage
-
- COMPOSITE - Static variable in class ij.CompositeImage
-
Display modes (note: TRANSPARENT mode has not yet been implemented)
- COMPOSITE - Static variable in class ij.gui.Roi
-
- COMPOSITE - Static variable in class ij.IJ
-
Image display modes
- CompositeConverter - Class in ij.plugin
-
This plugin implements the Image/Color/Make Composite command.
- CompositeConverter() - Constructor for class ij.plugin.CompositeConverter
-
- CompositeImage - Class in ij
-
- CompositeImage(ImagePlus) - Constructor for class ij.CompositeImage
-
- CompositeImage(ImagePlus, int) - Constructor for class ij.CompositeImage
-
- compositeImage - Variable in class ij.ImagePlus
-
- COMPOUND_FILTER - Static variable in class ij.Undo
-
- COMPOUND_FILTER_DONE - Static variable in class ij.Undo
-
- compression - Variable in class ij.io.FileInfo
-
- COMPRESSION - Static variable in class ij.io.TiffDecoder
-
- COMPRESSION_NONE - Static variable in class ij.io.FileInfo
-
- COMPRESSION_UNKNOWN - Static variable in class ij.io.FileInfo
-
- concatenate(ImagePlus[], boolean) - Method in class ij.plugin.Concatenator
-
Concatenates two or more images or stacks.
- concatenate(ImagePlus, ImagePlus, boolean) - Method in class ij.plugin.Concatenator
-
Concatenate two images or stacks.
- concatenateHyperstacks(ImagePlus[], String, boolean) - Method in class ij.plugin.Concatenator
-
Obsolete, replaced by concatenate(images,keep) and Concatenator.run(images).
- Concatenator - Class in ij.plugin
-
This plugin, which concatenates two or more images or stacks,
implements the Image/Stacks/Tools/Concatenate command.
- Concatenator() - Constructor for class ij.plugin.Concatenator
-
- conjugateMultiply(FHT) - Method in class ij.process.FHT
-
Returns the image resulting from the point by point Hartley conjugate
multiplication of this image and the specified image.
- CONNECTED_CIRCLES - Static variable in class ij.gui.Plot
-
Draw black lines between the dots and a circle with the given color at each dot
- constrain - Variable in class ij.gui.Roi
-
- CONSTRUCTING - Static variable in class ij.gui.Roi
-
- containedPoints(Roi) - Method in class ij.gui.PointRoi
-
Returns the points of this Roi that are contained in the specified area ROI.
- contains(int, int) - Method in class ij.gui.Arrow
-
- contains(int, int) - Method in class ij.gui.Line
-
- contains(int, int) - Method in class ij.gui.OvalRoi
-
Tests whether the center of the specified pixel is inside the boundary of this OvalRoi.
- contains(Roi) - Method in class ij.gui.Overlay
-
Returns 'true' if this Overlay contains the specified ROI.
- contains(int, int) - Method in class ij.gui.PointRoi
-
Returns true if (x,y) is one of the points in this collection.
- contains(int, int) - Method in class ij.gui.PolygonRoi
-
Returns whether the center of pixel (x,y) is contained in the Roi.
- contains(int, int) - Method in class ij.gui.Roi
-
Returns whether the center of pixel (x,y) is contained in the Roi.
- contains(int, int) - Method in class ij.gui.ShapeRoi
-
Checks whether the center of the specified pixel inside of this ROI's shape boundaries.
- contains(double, double) - Method in class ij.process.FloatPolygon
-
Returns 'true' if the point (x,y) is inside this polygon.
- containsPoint(double, double) - Method in class ij.gui.OvalRoi
-
Returns whether coordinate (x,y) is contained in the Roi.
- containsPoint(double, double) - Method in class ij.gui.PolygonRoi
-
Returns whether coordinate (x,y) is contained in the Roi.
- containsPoint(double, double) - Method in class ij.gui.Roi
-
Returns whether coordinate (x,y) is contained in the Roi.
- containsPoint(double, double) - Method in class ij.gui.ShapeRoi
-
Returns whether coordinate (x,y) is contained in the Roi.
- CONTINUE - Static variable in interface ij.macro.MacroConstants
-
- ContrastAdjuster - Class in ij.plugin.frame
-
This plugin implements the Brightness/Contrast, Window/level and
Color Balance commands, all in the Image/Adjust sub-menu.
- ContrastAdjuster() - Constructor for class ij.plugin.frame.ContrastAdjuster
-
- ContrastEnhancer - Class in ij.plugin
-
Implements ImageJ's Process/Enhance Contrast command.
- ContrastEnhancer() - Constructor for class ij.plugin.ContrastEnhancer
-
- controlKeyDown() - Static method in class ij.IJ
-
Returns true if the control key is down.
- ControlPanel - Class in ij.plugin
-
ControlPanel.
- ControlPanel() - Constructor for class ij.plugin.ControlPanel
-
- controlPanel() - Method in class ij.plugin.frame.SyncWindows
-
Build window list display and button controls.
- convert(String) - Method in class ij.plugin.Converter
-
Converts the ImagePlus to the specified image type.
- convert(ImageProcessor) - Method in class ij.plugin.filter.ThresholdToSelection
-
Returns a selection created from the thresholded pixels in the
specified image, or null if there are no thresholded pixels.
- convert(int) - Method in class ij.process.MedianCut
-
Uses Heckbert's median-cut algorithm to divide the color space defined by
"hist" into "maxcubes" cubes.
- CONVERT_TO_FLOAT - Static variable in interface ij.plugin.filter.PlugInFilter
-
Set this flag to have the ImageProcessor that is passed to the run() method
converted to a FloatProcessor.
- Converter - Class in ij.plugin
-
Implements the conversion commands in the Image/Type submenu.
- Converter() - Constructor for class ij.plugin.Converter
-
- convertGrayJpegTo8Bits(ImagePlus) - Static method in class ij.io.Opener
-
Converts the specified RGB image to 8-bits if the 3 channels are identical.
- convertHSBToRGB() - Method in class ij.process.ImageConverter
-
Converts a 3-slice (hue, saturation, brightness) 8-bit stack to RGB.
- convertHyperstack(ImagePlus, ImagePlus) - Method in class ij.plugin.RGBStackConverter
-
- convertImagesToStack() - Method in class ij.plugin.ImagesToStack
-
- convertImagesToStack() - Method in class ij.plugin.StackEditor
-
- convertIndexToPosition(int) - Method in class ij.ImagePlus
-
Converts the stack index 'n' (one-based) into a hyperstack position (channel, slice, frame).
- convertLabToRGB() - Method in class ij.process.ImageConverter
-
Converts a Lab stack to RGB.
- convertOutputType(Variable, Object) - Static method in class ij.macro.ExtensionDescriptor
-
- convertRGBStackToRGB() - Method in class ij.process.ImageConverter
-
Converts a 2 or 3 slice 8-bit stack to RGB.
- convertRGBtoIndexedColor(int) - Method in class ij.process.ImageConverter
-
Converts an RGB image to 8-bits indexed color.
- convertShortcutToCode(String) - Static method in class ij.Menus
-
- convertStackToImages(ImagePlus) - Method in class ij.plugin.StackEditor
-
- convertToByte(boolean) - Method in class ij.process.ImageProcessor
-
Returns an 8-bit version of this image as a ByteProcessor.
- convertToByte(int) - Method in class ij.process.MedianCut
-
This is a version of convert that returns a ByteProcessor.
- convertToByte() - Method in class ij.process.TypeConverter
-
Converts processor to a ByteProcessor.
- convertToByteProcessor() - Method in class ij.process.ImageProcessor
-
Returns an 8-bit version of this image as a ByteProcessor.
- convertToByteProcessor(boolean) - Method in class ij.process.ImageProcessor
-
Returns an 8-bit version of this image as a ByteProcessor.
- convertToColorProcessor() - Method in class ij.process.ImageProcessor
-
Returns an RGB version of this image as a ColorProcessor.
- convertToFloat() - Method in class ij.ImageStack
-
Creates a float version of this stack.
- convertToFloat() - Method in class ij.process.ImageProcessor
-
Returns a 32-bit float version of this image as a FloatProcessor.
- convertToFloat(float[]) - Method in class ij.process.TypeConverter
-
Converts processor to a FloatProcessor.
- convertToFloatProcessor() - Method in class ij.process.ImageProcessor
-
Returns a 32-bit float version of this image as a FloatProcessor.
- convertToGray16() - Method in class ij.process.ImageConverter
-
Converts this ImagePlus to 16-bit grayscale.
- convertToGray16() - Method in class ij.process.StackConverter
-
Converts this Stack to 16-bit grayscale.
- convertToGray32() - Method in class ij.process.ImageConverter
-
Converts this ImagePlus to 32-bit grayscale.
- convertToGray32() - Method in class ij.process.StackConverter
-
Converts this Stack to 32-bit (float) grayscale.
- convertToGray8() - Method in class ij.process.ImageConverter
-
Converts this ImagePlus to 8-bit grayscale.
- convertToGray8() - Method in class ij.process.StackConverter
-
Converts this Stack to 8-bit grayscale.
- convertToHSB() - Method in class ij.process.ImageConverter
-
Converts an RGB image to a HSB (hue, saturation and brightness) stack.
- convertToHSBHyperstack() - Method in class ij.process.StackConverter
-
Converts the stack (which must be RGB) to a 3 channel
(hue, saturation and brightness) hyperstack.
- convertToIndexedColor(int) - Method in class ij.process.StackConverter
-
Converts the stack to 8-bits indexed color.
- convertToLab() - Method in class ij.process.ImageConverter
-
Converts an RGB image to a Lab stack.
- convertToLabHyperstack() - Method in class ij.process.StackConverter
-
Converts the stack (which must be RGB) to a 3 channel
Lab hyperstack.
- convertToMicrons - Static variable in class ij.Prefs
-
Convert tiff units to microns if pixel width is less than 0.0001 cm.
- convertToRGB(ImagePlus) - Static method in class ij.plugin.RGBStackConverter
-
Converts the specified multi-channel (composite) image to RGB.
- convertToRGB() - Method in class ij.process.ImageConverter
-
Converts this ImagePlus to RGB.
- convertToRGB() - Method in class ij.process.ImageProcessor
-
Returns an RGB version of this image as a ColorProcessor.
- convertToRGB() - Method in class ij.process.StackConverter
-
Converts the Stack to RGB.
- convertToRGB() - Method in class ij.process.TypeConverter
-
Converts processor to a ColorProcessor.
- convertToRGBHyperstack() - Method in class ij.process.StackConverter
-
Converts the stack (which must be RGB) to a
3 channel (red, green and blue) hyperstack.
- convertToRGBStack() - Method in class ij.process.ImageConverter
-
Converts an RGB image to an RGB (red, green and blue) stack.
- convertToShort(boolean) - Method in class ij.process.ImageProcessor
-
Returns a 16-bit version of this image as a ShortProcessor.
- convertToShort() - Method in class ij.process.TypeConverter
-
Converts processor to a ShortProcessor.
- convertToShortProcessor() - Method in class ij.process.ImageProcessor
-
Returns a 16-bit version of this image as a ShortProcessor.
- convertToShortProcessor(boolean) - Method in class ij.process.ImageProcessor
-
Returns a 16-bit version of this image as a ShortProcessor.
- convertVariable(Interpreter, int, Variable) - Static method in class ij.macro.ExtensionDescriptor
-
- convolve(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
-
Convolves ip with a kernel of width kw and
height kh.
- convolve(float[], int, int) - Method in class ij.process.ByteProcessor
-
Performs a convolution operation using the specified kernel.
- convolve(float[], int, int) - Method in class ij.process.ColorProcessor
-
Performs a convolution operation using the specified kernel.
- convolve(float[], int, int) - Method in class ij.process.FloatProcessor
-
Performs a convolution operation using the specified kernel.
- CONVOLVE - Static variable in class ij.process.ImageProcessor
-
- convolve(float[], int, int) - Method in class ij.process.ImageProcessor
-
Performs a convolution operation using the specified kernel.
- convolve(float[], int, int) - Method in class ij.process.ShortProcessor
-
Performs a convolution operation using the specified kernel.
- convolve3x3(int[]) - Method in class ij.process.ByteProcessor
-
- convolve3x3(int[]) - Method in class ij.process.ColorProcessor
-
3x3 convolution contributed by Glynne Casteel.
- convolve3x3(int[]) - Method in class ij.process.FloatProcessor
-
Does 3x3 convolution.
- convolve3x3(int[]) - Method in class ij.process.ImageProcessor
-
Convolves the image or ROI with the specified
3x3 integer convolution kernel.
- convolve3x3(int[]) - Method in class ij.process.ShortProcessor
-
Does 3x3 convolution.
- convolveFloat(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
-
Convolves the float image ip with a kernel of width
kw and height kh.
- convolveFloat1D(FloatProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver
-
Convolves the image ip with a kernel of width
kw and height kh.
- convolveFloat1D(FloatProcessor, float[], int, int, double) - Method in class ij.plugin.filter.Convolver
-
Convolves the image ip with a kernel of width
kw and height kh.
- Convolver - Class in ij.plugin.filter
-
This plugin convolves images using user user defined kernels.
- Convolver() - Constructor for class ij.plugin.filter.Convolver
-
- COORDINATES - Static variable in class ij.io.RoiDecoder
-
- Coordinates - Class in ij.plugin
-
The plugin implements the Image/Adjust/Coordinates command.
- Coordinates() - Constructor for class ij.plugin.Coordinates
-
- copy - Variable in class ij.gui.HistogramWindow
-
- copy(boolean) - Method in class ij.gui.ImageWindow
-
Copies the current ROI to the clipboard.
- copy() - Method in class ij.ImagePlus
-
Copies the contents of the current selection, or the entire
image if there is no selection, to the internal clipboard.
- copy(boolean) - Method in class ij.ImagePlus
-
Copies the contents of the current selection to the internal clipboard.
- copy() - Method in class ij.measure.Calibration
-
Returns a clone of this object.
- COPY - Static variable in interface ij.process.Blitter
-
dst=src
- COPY_AXIS_STYLE - Static variable in class ij.gui.Plot
-
Flag for copying from a template: copy axis style
- COPY_CONTENTS_STYLE - Static variable in class ij.gui.Plot
-
Flag for copying from a template: copy contents style
- COPY_INVERTED - Static variable in interface ij.process.Blitter
-
dst=255-src (8-bits and RGB)
- COPY_LABELS - Static variable in class ij.gui.Plot
-
Flag for copying from a template: copy style & text of axis labels
- COPY_LEGEND - Static variable in class ij.gui.Plot
-
Flag for copying from a template: copy legend
- COPY_SIZE - Static variable in class ij.gui.Plot
-
Flag for copying from a template: copy plot size
- COPY_TRANSPARENT - Static variable in interface ij.process.Blitter
-
Copies with white pixels transparent.
- COPY_ZERO_TRANSPARENT - Static variable in interface ij.process.Blitter
-
Copies with zero pixels transparent.
- copyAttributes(Roi) - Method in class ij.gui.Roi
-
Copy the attributes (outline color, fill color, outline width)
of 'roi2' to the this selection.
- copyAttributes(ImagePlus) - Method in class ij.ImagePlus
-
Copies attributes (name, ID, calibration, path, plot) of the specified image to this image.
- copyBits(ImageProcessor, int, int, int) - Method in interface ij.process.Blitter
-
Copies the image in 'src' to (x,y) using the specified mode.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteBlitter
-
Copies the byte image in 'ip' to (x,y) using the specified mode.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteProcessor
-
Copies the image contained in 'ip' to (xloc, yloc) using one of
the transfer modes defined in the Blitter interface.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorBlitter
-
Copies the RGB image in 'ip' to (x,y) using the specified mode.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorProcessor
-
Copies the image contained in 'ip' to (xloc, yloc) using one of
the transfer modes defined in the Blitter interface.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatBlitter
-
Copies the float image in 'ip' to (x,y) using the specified mode.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatProcessor
-
Copies the image contained in 'ip' to (xloc, yloc) using one of
the transfer modes defined in the Blitter interface.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ImageProcessor
-
Copies the image contained in 'ip' to (xloc, yloc) using one of
the transfer modes defined in the Blitter interface.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortBlitter
-
Copies the 16-bit image in 'ip' to (x,y) using the specified mode.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortProcessor
-
Copies the image contained in 'ip' to (xloc, yloc) using one of
the transfer modes defined in the Blitter interface.
- copyBits(ImageProcessor, int, int, int) - Method in class ij.process.StackProcessor
-
- copyBits(ImageStack, int, int, int) - Method in class ij.process.StackProcessor
-
- copyColumnHeaders - Static variable in class ij.Prefs
-
Include column headers when copying tables to clipboard.
- copyFile(File, File) - Static method in class ij.macro.Functions
-
- copyFile(String, String) - Static method in class ij.util.Tools
-
Copies the contents of the file at 'path1' to 'path2', returning an error message
(as a non-empty string) if there is an error.
- copyLuts(ImagePlus) - Method in class ij.CompositeImage
-
Copies the LUTs and display mode of 'imp' to this image.
- copyScale(ImagePlus) - Method in class ij.ImagePlus
-
Copies the calibration of the specified image to this image.
- copySelection() - Method in class ij.text.TextPanel
-
Copies the current selection to the system clipboard.
- copyToClipboard() - Method in class ij.gui.HistogramWindow
-
- CORNER_DIAMETER - Static variable in class ij.gui.Toolbar
-
- COS - Static variable in interface ij.macro.MacroConstants
-
- count - Variable in class ij.gui.HistogramWindow
-
- COUNT - Static variable in class ij.plugin.filter.MaximumFinder
-
Do not create an image, just count maxima and add count to Results table
- COUNTERS_OFFSET - Static variable in class ij.io.RoiDecoder
-
- create() - Method in class ij.gui.Overlay
-
Returns a new Overlay that has the same properties as this one.
- create(int, int, int, int) - Static method in class ij.ImageStack
-
Creates a new ImageStack.
- create(String, String) - Method in class ij.plugin.frame.Editor
-
- createBlankImage(int, int) - Static method in class ij.gui.GUI
-
Creates a white AWT Image image of the specified size.
- createByteImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
-
- createColorModel(FileInfo) - Method in class ij.io.FileOpener
-
Returns an IndexColorModel for the image specified by this FileInfo.
- createComposite(int, int, int, ImageStack[], boolean) - Method in class ij.plugin.RGBStackMerge
-
Deprecated; replaced by mergeChannels().
- CREATED - Static variable in interface ij.gui.RoiListener
-
- createEmptyStack() - Method in class ij.ImagePlus
-
Returns an empty image stack that has the same
width, height and color table as this image.
- createFloatImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
-
- createGrayscaleColorModel(boolean) - Static method in class ij.LookUpTable
-
- createHyperStack(String, int, int, int, int, int, int) - Static method in class ij.IJ
-
Creates a new hyperstack.
- createHyperStack(String, int, int, int, int) - Method in class ij.ImagePlus
-
This method has been replaced by IJ.createHyperStack().
- createImage(String, int, int, int, int, int) - Static method in class ij.gui.NewImage
-
- createImage(String, int, int, int, int) - Static method in class ij.IJ
-
Creates a new image.
- createImage(String, String, int, int, int) - Static method in class ij.IJ
-
Creates a new imagePlus.
- createImage(String, String, int, int, int, int, int) - Static method in class ij.IJ
-
Creates a new hyperstack.
- createImage(IndexColorModel) - Static method in class ij.plugin.LutLoader
-
Creates a 256x32 image from an IndexColorModel.
- createImage() - Method in class ij.process.ByteProcessor
-
- createImage() - Method in class ij.process.ColorProcessor
-
- createImage() - Method in class ij.process.FloatProcessor
-
Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
- createImage() - Method in class ij.process.ImageProcessor
-
Returns a copy of this image is the form of an AWT Image.
- createImage() - Method in class ij.process.ShortProcessor
-
Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
- createImagePlus() - Method in class ij.ImagePlus
-
Returns a new ImagePlus with this image's attributes
(e.g.
- createInputStream(FileInfo) - Method in class ij.io.FileOpener
-
Returns an InputStream for the image described by this FileInfo.
- createInvertedLut() - Method in class ij.process.LUT
-
- createLut() - Method in class ij.ImagePlus
-
Creates a LookUpTable object that corresponds to this image.
- createLutFromColor(Color) - Method in class ij.CompositeImage
-
- createLutFromColor(Color) - Static method in class ij.process.LUT
-
Creates a color LUT from a Color.
- createMacro(String, String) - Method in class ij.plugin.frame.Editor
-
- createMacro(String) - Method in class ij.plugin.NewPlugin
-
- createMask(ImagePlus) - Static method in class ij.plugin.Thresholder
-
Returns an 8-bit binary (0 and 255) threshold mask
that has the same dimensions as this image.
- createMask() - Method in class ij.process.ByteProcessor
-
Returns a binary mask, or null if a threshold is not set.
- createMask() - Method in class ij.process.FloatProcessor
-
Returns a binary mask, or null if a threshold is not set.
- createMask() - Method in class ij.process.ImageProcessor
-
Returns a binary mask, or null if a threshold is not set or this is an RGB image.
- createMask() - Method in class ij.process.ShortProcessor
-
Returns a binary mask, or null if a threshold is not set.
- createNewRoi(int, int) - Method in class ij.ImagePlus
-
Starts the process of creating a new selection, where sx and sy are the
starting screen coordinates.
- createOverlay() - Static method in class ij.plugin.OverlayLabels
-
Creates an empty Overlay that has the current label settings.
- createPlugin(String, int, String) - Method in class ij.plugin.NewPlugin
-
- createProcessor(int, int) - Method in class ij.process.ByteProcessor
-
Returns a new, blank ByteProcessor with the specified width and height.
- createProcessor(int, int) - Method in class ij.process.ColorProcessor
-
Returns a new, blank ColorProcessor with the specified width and height.
- createProcessor(int, int) - Method in class ij.process.FloatProcessor
-
Returns a new, blank FloatProcessor with the specified width and height.
- createProcessor(int, int) - Method in class ij.process.ImageProcessor
-
Returns a new, blank processor with the specified width and height.
- createProcessor(int, int) - Method in class ij.process.ShortProcessor
-
Returns a new, blank ShortProcessor with the specified width and height.
- createRGBImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
-
- createRoiMask() - Method in class ij.ImagePlus
-
Returns an 8-bit binary (foreground=255, background=0)
ROI or overlay mask that has the same dimensions
as this image.
- createShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
-
Creates an unsigned short image.
- createSubtitle() - Method in class ij.gui.ImageWindow
-
Creates the subtitle.
- createSubtitle() - Method in class ij.gui.StackWindow
-
- createTableFromImage(ImageProcessor) - Static method in class ij.measure.ResultsTable
-
Creates a ResultsTable from an image or image selection.
- createThreadArray(int) - Static method in class ij.util.ThreadUtil
-
- createThreadArray() - Static method in class ij.util.ThreadUtil
-
- createThresholdMask() - Method in class ij.ImagePlus
-
Returns an 8-bit binary threshold mask
(foreground=255, background=0)
that has the same dimensions as this image.
- createUnsignedShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
-
- createWindow() - Method in class ij.gui.ProfilePlot
-
Displays this profile plot in a window.
- crop(Rectangle) - Method in class ij.gui.Overlay
-
- crop(int, int) - Method in class ij.gui.Overlay
-
Removes ROIs having positions outside of the
interval defined by firstSlice and lastSlice.
- crop(int, int, int, int, int, int) - Method in class ij.gui.Overlay
-
Removes ROIs having a C, Z or T coordinate outside the volume
defined by firstC, lastC, firstZ, lastZ, firstT and lastT.
- crop() - Method in class ij.ImagePlus
-
Returns a copy this image or stack slice, cropped if there is an ROI.
- crop(String) - Method in class ij.ImagePlus
-
Returns a cropped copy this image or stack, where 'options'
can be "stack", "slice" or a range (e.g., "20-30").
- crop(int, int, int, int, int, int) - Method in class ij.ImageStack
-
Creates a new stack by cropping this one.
- crop(ImagePlus) - Method in class ij.plugin.Duplicator
-
Returns a copy the current stack image, cropped if there is a selection.
- crop() - Method in class ij.process.ByteProcessor
-
- crop() - Method in class ij.process.ColorProcessor
-
- crop() - Method in class ij.process.FloatProcessor
-
- crop() - Method in class ij.process.ImageProcessor
-
Returns a new processor containing an image
that corresponds to the current ROI.
- crop() - Method in class ij.process.ShortProcessor
-
- crop(int, int, int, int) - Method in class ij.process.StackProcessor
-
Crops the stack to the specified rectangle.
- cropOverlay(Overlay, Rectangle) - Static method in class ij.plugin.Duplicator
-
- CROSS - Static variable in class ij.gui.Plot
-
Display points using an cross-shaped mark.
- CROSS - Static variable in class ij.gui.PlotWindow
-
Deprecated.
- CROSSHAIR - Static variable in class ij.gui.Toolbar
-
- crosshairCursor - Static variable in class ij.gui.ImageCanvas
-
- cScaling - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- cSelector - Variable in class ij.gui.StackWindow
-
- cSlice - Variable in class ij.plugin.frame.SyncWindows
-
Checkboxes for user control.
- cTable - Variable in class ij.process.ImageProcessor
-
- CTZ - Static variable in class ij.plugin.HyperStackConverter
-
- cubic(double) - Static method in class ij.process.ImageProcessor
-
- currentMacroEditor - Static variable in class ij.plugin.frame.Editor
-
- currentMemory() - Static method in class ij.IJ
-
Returns the amount of memory currently being used by ImageJ.
- currentSlice - Variable in class ij.ImagePlus
-
- cursorOverImage() - Method in class ij.gui.ImageCanvas
-
Returns 'true' if the cursor is over this image.
- CurveFitter - Class in ij.measure
-
Curve fitting class based on the Simplex method in the Minimizer class
Notes on fitting polynomial functions:
(i) The range of x values should not be too far from 0, especially for higher-order polynomials.
- CurveFitter(double[], double[]) - Constructor for class ij.measure.CurveFitter
-
Construct a new CurveFitter.
- CUSTOM - Static variable in class ij.gui.Plot
-
Draw shape using macro code
- CUSTOM - Static variable in class ij.io.Opener
-
- CUSTOM - Static variable in class ij.measure.Calibration
-
- CUSTOM1 - Static variable in class ij.gui.Toolbar
-
- CUSTOM2 - Static variable in class ij.gui.Toolbar
-
- CUSTOM3 - Static variable in class ij.gui.Toolbar
-
- CUSTOM4 - Static variable in class ij.gui.Toolbar
-
- CUSTOM5 - Static variable in class ij.gui.Toolbar
-
- CUSTOM6 - Static variable in class ij.gui.Toolbar
-
- CUSTOM7 - Static variable in class ij.gui.Toolbar
-
- cx - Variable in class ij.process.ImageProcessor
-
- cy - Variable in class ij.process.ImageProcessor
-
- CZT - Static variable in class ij.plugin.HyperStackConverter
-
- gamma(double) - Method in class ij.process.FloatProcessor
-
- gamma(double) - Method in class ij.process.ImageProcessor
-
Performs gamma correction of the image or ROI.
- gamma(double) - Method in class ij.process.ShortProcessor
-
- GAMMA_VARIATE - Static variable in class ij.measure.Calibration
-
- GAMMA_VARIATE - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- gapBetweenImages - Variable in class ij.io.FileInfo
-
- GAUSSIAN - Static variable in class ij.measure.Calibration
-
- GAUSSIAN - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- GAUSSIAN_NOOFFSET - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- GaussianBlur - Class in ij.plugin.filter
-
This plug-in filter uses convolution with a Gaussian function for smoothing.
- GaussianBlur() - Constructor for class ij.plugin.filter.GaussianBlur
-
- GaussianBlur3D - Class in ij.plugin
-
- GaussianBlur3D() - Constructor for class ij.plugin.GaussianBlur3D
-
- GelAnalyzer - Class in ij.plugin
-
This plugin generates gel profile plots that can be analyzed using
the wand tool.
- GelAnalyzer() - Constructor for class ij.plugin.GelAnalyzer
-
- GenericDialog - Class in ij.gui
-
This class is a customizable modal dialog box.
- GenericDialog(String) - Constructor for class ij.gui.GenericDialog
-
Creates a new GenericDialog with the specified title.
- GenericDialog(String, Frame) - Constructor for class ij.gui.GenericDialog
-
Creates a new GenericDialog using the specified title and parent frame.
- get(int) - Method in class ij.gui.Overlay
-
Returns the ROI with the specified index or null if the index is invalid.
- get(String) - Method in class ij.gui.Overlay
-
Returns the ROI with the specified name or null if not found.
- get(String, String) - Static method in class ij.Prefs
-
Uses the keyword key to retrieve a string from the
preferences file.
- get(String, double) - Static method in class ij.Prefs
-
Uses the keyword key to retrieve a number from the
preferences file.
- get(String, boolean) - Static method in class ij.Prefs
-
Uses the keyword key to retrieve a boolean from
the preferences file.
- get(int, int) - Method in class ij.process.ByteProcessor
-
- get(int) - Method in class ij.process.ByteProcessor
-
- get(int, int) - Method in class ij.process.ColorProcessor
-
- get(int) - Method in class ij.process.ColorProcessor
-
- get(int, int) - Method in class ij.process.FloatProcessor
-
- get(int) - Method in class ij.process.FloatProcessor
-
- get(int, int) - Method in class ij.process.ImageProcessor
-
This is a faster version of getPixel() that does not do bounds checking.
- get(int) - Method in class ij.process.ImageProcessor
-
- get(int, int) - Method in class ij.process.ShortProcessor
-
- get(int) - Method in class ij.process.ShortProcessor
-
- get(int) - Method in class ij.util.FloatArray
-
Returns the element at the specified position in this FloatArray.
- get16BitBufferedImage() - Method in class ij.process.ShortProcessor
-
Returns a copy of this image as a TYPE_USHORT_GRAY BufferedImage.
- get16bitRangeIndex() - Static method in class ij.plugin.frame.ContrastAdjuster
-
- GET_ARGUMENT - Static variable in interface ij.macro.MacroConstants
-
- GET_BOOLEAN - Static variable in interface ij.macro.MacroConstants
-
- GET_BOUNDING_RECT - Static variable in interface ij.macro.MacroConstants
-
- GET_BOUNDS - Static variable in interface ij.macro.MacroConstants
-
- GET_COORDINATES - Static variable in interface ij.macro.MacroConstants
-
- GET_COUNT - Static variable in interface ij.macro.MacroConstants
-
- GET_CURSOR_LOC - Static variable in interface ij.macro.MacroConstants
-
- GET_DATE_AND_TIME - Static variable in interface ij.macro.MacroConstants
-
- GET_DIMENSIONS - Static variable in interface ij.macro.MacroConstants
-
- GET_DIRECTORY - Static variable in interface ij.macro.MacroConstants
-
- GET_DISPLAYED_AREA - Static variable in interface ij.macro.MacroConstants
-
- GET_FILE_LIST - Static variable in interface ij.macro.MacroConstants
-
- GET_FONT_LIST - Static variable in interface ij.macro.MacroConstants
-
- GET_HEIGHT - Static variable in interface ij.macro.MacroConstants
-
- GET_HISTOGRAM - Static variable in interface ij.macro.MacroConstants
-
- GET_ID - Static variable in interface ij.macro.MacroConstants
-
- GET_IMAGE_INFO - Static variable in interface ij.macro.MacroConstants
-
- GET_INFO - Static variable in interface ij.macro.MacroConstants
-
- GET_LINE - Static variable in interface ij.macro.MacroConstants
-
- GET_LIST - Static variable in interface ij.macro.MacroConstants
-
- GET_LOCATION_AND_SIZE - Static variable in interface ij.macro.MacroConstants
-
- GET_LUT - Static variable in interface ij.macro.MacroConstants
-
- GET_METADATA - Static variable in interface ij.macro.MacroConstants
-
- GET_MIN_AND_MAX - Static variable in interface ij.macro.MacroConstants
-
- GET_NUMBER - Static variable in interface ij.macro.MacroConstants
-
- GET_PIXEL - Static variable in interface ij.macro.MacroConstants
-
- GET_PIXEL_SIZE - Static variable in interface ij.macro.MacroConstants
-
- GET_PROFILE - Static variable in interface ij.macro.MacroConstants
-
- GET_RAW_STATISTICS - Static variable in interface ij.macro.MacroConstants
-
- GET_RESULT - Static variable in interface ij.macro.MacroConstants
-
- GET_RESULT_LABEL - Static variable in interface ij.macro.MacroConstants
-
- GET_RESULT_STRING - Static variable in interface ij.macro.MacroConstants
-
- GET_SLICE_NUMBER - Static variable in interface ij.macro.MacroConstants
-
- GET_STATISTICS - Static variable in interface ij.macro.MacroConstants
-
- GET_STRING - Static variable in interface ij.macro.MacroConstants
-
- GET_STRING_WIDTH - Static variable in interface ij.macro.MacroConstants
-
- GET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
-
- GET_TIME - Static variable in interface ij.macro.MacroConstants
-
- GET_TITLE - Static variable in interface ij.macro.MacroConstants
-
- GET_VALUE - Static variable in interface ij.macro.MacroConstants
-
- GET_VERSION - Static variable in interface ij.macro.MacroConstants
-
- GET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
-
- GET_WIDTH - Static variable in interface ij.macro.MacroConstants
-
- GET_ZOOM - Static variable in interface ij.macro.MacroConstants
-
- getActiveChannels() - Method in class ij.CompositeImage
-
- getActiveWindow() - Static method in class ij.WindowManager
-
Returns the front most window or null.
- getAdditionalFunctions() - Static method in class ij.macro.Interpreter
-
- getAllNonImageWindows() - Static method in class ij.WindowManager
-
Returns an array containing a list of the non-image Frames and Dialogs.
- getAllStatistics() - Method in class ij.ImagePlus
-
This method returns complete calibrated statistics for this
image or ROI (with "Limit to threshold"), but it is up to 70 times
slower than getStatistics().
- getAngle() - Method in class ij.gui.Line
-
- getAngle() - Method in class ij.gui.PolygonRoi
-
Returns the angle in degrees between the first two segments of this polyline.
- getAngle(int, int, int, int) - Method in class ij.gui.Roi
-
Returns the angle in degrees between the specified line and a horizontal line.
- getAngle() - Method in class ij.gui.Roi
-
Overridden by PolygonRoi (angle between first two points), TextRoi (text angle) and Line (line angle).
- getAngle() - Method in class ij.gui.TextRoi
-
- getAngle() - Static method in class ij.plugin.filter.Rotator
-
Returns the current angle.
- getAnimate() - Method in class ij.gui.StackWindow
-
- getAntiAlias() - Method in class ij.gui.Roi
-
- getAntialiased() - Method in class ij.gui.TextRoi
-
Returns the state of the 'antiAlias' instance variable.
- getApplet() - Static method in class ij.IJ
-
Returns the Applet that created this ImageJ or null if running as an application.
- getArgs() - Static method in class ij.ImageJ
-
Returns the command line arguments passed to ImageJ.
- getAutoThreshold() - Method in class ij.process.ImageProcessor
-
Returns a pixel value (threshold) that can be used to divide the image into objects
and background.
- getAutoThreshold(int[]) - Method in class ij.process.ImageProcessor
-
This is a version of getAutoThreshold() that uses a histogram passed as an argument.
- getBackgroundColor() - Static method in class ij.gui.Toolbar
-
- getBackgroundValue() - Method in class ij.process.ByteProcessor
-
Returns the background fill value.
- getBackgroundValue() - Method in class ij.process.ColorProcessor
-
Returns the background fill value.
- getBackgroundValue() - Method in class ij.process.FloatProcessor
-
- getBackgroundValue() - Method in class ij.process.ImageProcessor
-
Returns the background fill value.
- getBackgroundValue() - Method in class ij.process.ShortProcessor
-
- getBatchModeImage(int) - Static method in class ij.macro.Interpreter
-
- getBatchModeImageCount() - Static method in class ij.macro.Interpreter
-
- getBatchModeImageIDs() - Static method in class ij.macro.Interpreter
-
- getBatchModeRoiManager() - Static method in class ij.macro.Interpreter
-
Returns the batch mode RoiManager instance.
- getBestIndex(Color) - Method in class ij.process.ColorProcessor
-
Always returns 0 since RGB images do not use LUTs.
- getBestIndex(Color) - Method in class ij.process.ImageProcessor
-
Returns the LUT index that's the best match for this color.
- getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.FloatProcessor
-
This method is from Chapter 16 of "Digital Image Processing:
An Algorithmic Introduction Using Java" by Burger and Burge
(http://www.imagingbook.com/).
- getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.ImageProcessor
-
This method is from Chapter 16 of "Digital Image Processing:
An Algorithmic Introduction Using Java" by Burger and Burge
(http://www.imagingbook.com/).
- getBitDepth() - Method in class ij.gui.PlotVirtualStack
-
Returns either 24 (RGB) or 8 (grayscale).
- getBitDepth() - Method in class ij.ImagePlus
-
Returns the bit depth, 8, 16, 24 (RGB) or 32, or 0 if the bit depth
is unknown.
- getBitDepth() - Method in class ij.ImageStack
-
Returns the bit depth (8=byte, 16=short, 24=RGB, 32=float).
- getBitDepth() - Method in class ij.process.ByteProcessor
-
- getBitDepth() - Method in class ij.process.ColorProcessor
-
- getBitDepth() - Method in class ij.process.FloatProcessor
-
- getBitDepth() - Method in class ij.process.ImageProcessor
-
Returns the bit depth, 8, 16, 24 (RGB) or 32.
- getBitDepth() - Method in class ij.process.ShortProcessor
-
- getBitDepth() - Method in class ij.VirtualStack
-
Returns the bit depth (8, 16, 24 or 32), or 0 if the bit depth is not known.
- getBits(int) - Method in class ij.io.BitBuffer
-
- getBlockIncrement() - Method in class ij.gui.ScrollbarWithLabel
-
- getBlue(String) - Static method in class ij.plugin.Colors
-
- getBlues() - Method in class ij.LookUpTable
-
- getBoolean(String, boolean) - Static method in class ij.Prefs
-
Finds a boolean in IJ_Props or IJ_Prefs.txt.
- getBoundingRect() - Method in class ij.gui.Roi
-
- getBounds() - Method in class ij.gui.Arrow
-
Return the bounding rectangle of this arrow.
- getBounds() - Method in class ij.gui.Line
-
Return the bounding rectangle of this line.
- getBounds() - Method in class ij.gui.Roi
-
Return this selection's bounding rectangle.
- getBounds() - Method in class ij.process.FloatPolygon
-
- getBrightness() - Method in class ij.process.ColorProcessor
-
Returns brightness as a FloatProcessor.
- getBrushSize() - Static method in class ij.gui.Toolbar
-
Returns the size of the selection brush tool, or 0 if the brush tool is not enabled.
- getBufferedImage() - Method in class ij.ImagePlus
-
Returns a copy of this image as an 8-bit or RGB BufferedImage.
- getBufferedImage() - Method in class ij.process.ByteProcessor
-
Returns this image as a BufferedImage.
- getBufferedImage() - Method in class ij.process.FloatProcessor
-
Returns this image as an 8-bit BufferedImage.
- getBufferedImage() - Method in class ij.process.ImageProcessor
-
Returns this image as a BufferedImage.
- getBufferedImage() - Method in class ij.process.ShortProcessor
-
Returns this image as an 8-bit BufferedImage .
- getButton() - Method in class ij.gui.WaitForUserDialog
-
Returns a reference to the 'OK' button
- getButtons() - Method in class ij.gui.GenericDialog
-
Returns references to the "OK" ("Yes"), "Cancel",
and if present, "No" buttons as an array.
- getButtonSize() - Static method in class ij.gui.Toolbar
-
Returns the button width (button spacing).
- getBytes() - Method in class ij.process.LUT
-
- getBytesPerPixel() - Method in class ij.ImagePlus
-
Returns the number of bytes per pixel.
- getBytesPerPixel() - Method in class ij.io.FileInfo
-
Returns the number of bytes used per pixel.
- getC() - Method in class ij.ImagePlus
-
Returns the current hyperstack channel position.
- getCalibration() - Method in class ij.ImagePlus
-
Returns this image's calibration.
- getCalibrationTable() - Method in class ij.process.ImageProcessor
-
Returns the calibration table or null.
- getCanvas() - Method in class ij.gui.ImageWindow
-
- getCanvas() - Method in class ij.ImagePlus
-
Returns the ImageCanvas being used to
display this image, or null.
- getCaseSensitive() - Method in class ij.util.WildcardMatch
-
Returns the current state of case sensitivity.
- getChannel() - Method in class ij.ImagePlus
-
- getChannel(ImagePlus, int) - Static method in class ij.plugin.ChannelSplitter
-
Returns, as an ImageStack, the specified channel, where 'c' must be greater
than zero and less than or equal to the number of channels in the image.
- getChannel(int) - Method in class ij.process.ColorProcessor
-
Returns the specified plane (1=red, 2=green, 3=blue, 4=alpha) as a byte array.
- getChannel(int, ByteProcessor) - Method in class ij.process.ColorProcessor
-
Returns the specified plane (1=red, 2=green, 3=blue, 4=alpha) as a ByteProcessor.
- getChannelColor() - Method in class ij.CompositeImage
-
- getChannelLut(int) - Method in class ij.CompositeImage
-
- getChannelLut() - Method in class ij.CompositeImage
-
- getChannelProcessor() - Method in class ij.CompositeImage
-
- getChannelProcessor() - Method in class ij.ImagePlus
-
Returns a reference to the current ImageProcessor.
- getCheckboxes() - Method in class ij.gui.GenericDialog
-
Returns the Vector containing the Checkboxes.
- getChoices() - Method in class ij.gui.GenericDialog
-
Returns the Vector containing the Choices.
- getClassLoader() - Static method in class ij.IJ
-
Returns the class loader ImageJ uses to run plugins or the
system class loader if Menus.getPlugInsPath() returns null.
- getClipboard() - Static method in class ij.ImagePlus
-
Returns the internal clipboard or null if the internal clipboard is empty.
- getClosestPoint(double, double, FloatPolygon) - Method in class ij.gui.PointRoi
-
- getClosestPoint(double, double, FloatPolygon) - Method in class ij.gui.PolygonRoi
-
- getCode() - Method in class ij.io.FileInfo
-
Returns JavaScript code that can be used to recreate this FileInfo.
- getCode() - Method in class ij.macro.Program
-
- getCoefficients() - Method in class ij.measure.Calibration
-
Returns the calibration function coefficients.
- getColor() - Method in class ij.gui.ColorChooser
-
Displays a color selection dialog and returns the color selected by the user.
- getColor() - Static method in class ij.gui.Roi
-
Returns the default (global) color used for drawing ROI outlines.
- getColor() - Method in class ij.gui.Toolbar
-
- getColor(String, Color) - Static method in class ij.plugin.Colors
-
- getColor(String, Color) - Static method in class ij.Prefs
-
Finds a color in IJ_Props or IJ_Prefs.txt.
- getColor(int, int) - Method in class ij.process.ColorProcessor
-
- getColorModel() - Method in class ij.ImageStack
-
Returns this stack's color model.
- getColorModel() - Method in class ij.LookUpTable
-
- getColorModel() - Method in class ij.process.ImageProcessor
-
Returns this processor's color model.
- getColorModel() - Method in class ij.process.LUT
-
- getColorName(Color, String) - Static method in class ij.plugin.Colors
-
- getColors(String...) - Static method in class ij.plugin.Colors
-
- getColumn(int) - Method in class ij.measure.ResultsTable
-
Returns a copy of the given column as a float array,
or null if the column is empty.
- getColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor
-
Returns the pixel values down the column starting at (x,y).
- getColumnAsDoubles(int) - Method in class ij.measure.ResultsTable
-
Returns a copy of the given column as a double array,
or null if the column is empty.
- getColumnAsVariables(String) - Method in class ij.measure.ResultsTable
-
Implements the Table.getColumn() macro function.
- getColumnAverageProfile(Rectangle, ImageProcessor) - Static method in class ij.gui.ProfilePlot
-
- getColumnHeading(int) - Method in class ij.measure.ResultsTable
-
Returns the heading of the specified column or null if the column is empty.
- getColumnHeadings() - Method in class ij.measure.ResultsTable
-
Returns a tab or comma delimited string containing the column headings.
- getColumnHeadings() - Method in class ij.text.TextPanel
-
Returns the column headings as a tab-delimited string.
- getColumnIndex(String) - Method in class ij.measure.ResultsTable
-
Returns the index of the first column with the given heading.
- getCommand() - Static method in class ij.Executer
-
Returns the last command executed.
- getCommand() - Static method in class ij.plugin.frame.Recorder
-
Returns the name of the command currently being recorded, or null.
- getCommandName() - Static method in class ij.ImageJ
-
- getCommandOptions() - Static method in class ij.plugin.frame.Recorder
-
Used by GenericDialog to determine if any options have been recorded.
- getCommands() - Static method in class ij.Menus
-
Returns the hashtable that associates commands with plugins.
- getCompletedMinimizations() - Method in class ij.measure.Minimizer
-
Get number of minimizations completed (i.e.
- getComplexTransform() - Method in class ij.process.FHT
-
Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
- getCompositeMode() - Method in class ij.ImagePlus
-
Returns the display mode (IJ.COMPOSITE, IJ.COLOR
or IJ.GRAYSCALE) if this is a CompositeImage, otherwise returns -1.
- getContainedFloatPoints() - Method in class ij.gui.PointRoi
-
Returns the points as a FloatPolygon.
- getContainedFloatPoints() - Method in class ij.gui.Roi
-
Returns the coordinates of the pixels inside this ROI as a FloatPolygon.
- getContainedPoints() - Method in class ij.gui.PointRoi
-
Returns the points as an array of Points.
- getContainedPoints() - Method in class ij.gui.Roi
-
Returns the coordinates of the pixels inside this ROI as an array of Points.
- getContourCentroid() - Method in class ij.gui.Roi
-
- getControlPanelProperties() - Static method in class ij.Prefs
-
- getConvexHull() - Method in class ij.gui.Roi
-
Returns the convex hull of this Roi as a Polygon with integer coordinates
by rounding the floating-point values.
- getConvexHull() - Method in class ij.process.FloatPolygon
-
Uses the gift wrap algorithm to find the convex hull of all points in
this FloatPolygon and returns it as a new FloatPolygon.
- getCopy() - Method in class ij.process.FHT
-
Returns a clone of this FHT.
- getCornerDiameter() - Method in class ij.gui.Roi
-
Returns the rounded rectangle corner diameter (pixels).
- getCount(int) - Method in class ij.gui.PointRoi
-
Returns the count associated with the specified counter index.
- getCount() - Method in class ij.plugin.frame.RoiManager
-
Returns the ROI count.
- getCounter() - Method in class ij.gui.PointRoi
-
Returns the index of the current counter.
- getCounter(int) - Method in class ij.gui.PointRoi
-
Returns the counter assocated with the specified point.
- getCounter() - Method in class ij.measure.ResultsTable
-
Returns the current value of the measurement counter.
- getCounter() - Static method in class ij.plugin.filter.Analyzer
-
Returns the current measurement count.
- getCounterChoices() - Static method in class ij.gui.PointRoi
-
- getCounterInfo() - Method in class ij.gui.PointRoi
-
- getCounters() - Method in class ij.gui.PointRoi
-
Returns an array containing for each point:
The counter number (0-100) in the lower 8 bits, and the slice number
(or 0, if the point appears on all slices) in the higher 24 bits.
- getCPosition() - Method in class ij.gui.Roi
-
Returns the channel position of this ROI, or zero
if this ROI is not associated with a particular channel.
- getCrossLoc() - Method in class ij.plugin.Orthogonal_Views
-
- getCTable() - Method in class ij.measure.Calibration
-
Returns the calibration table.
- getCurrentColorModel() - Method in class ij.process.ImageProcessor
-
Returns the current color model, which may have
been modified by setMinAndMax() or setThreshold().
- getCurrentErrStream() - Static method in class ij.io.LogStream
-
Returns the redirection stream for System.err if it exists.
- getCurrentFont() - Method in class ij.gui.TextRoi
-
Returns the current (instance) font.
- getCurrentImage() - Static method in class ij.WindowManager
-
Returns a reference to the active image or null if there isn't one.
- getCurrentOutStream() - Static method in class ij.io.LogStream
-
Returns the redirection stream for System.out if it exists.
- getCurrentPasteMode() - Static method in class ij.gui.Roi
-
Returns the current paste transfer mode.
- getCurrentSlice() - Method in class ij.ImagePlus
-
Returns the current stack index (one-based) or 1 if this is a single image.
- getCurrentWindow() - Static method in class ij.WindowManager
-
Returns the active ImageWindow.
- getCursorLoc() - Method in class ij.gui.ImageCanvas
-
Returns the current cursor location in image coordinates.
- getCustomPrefsPath() - Static method in class ij.Prefs
-
Returns the custom preferences (IJ_Prefs.txt) file path.
- getCustomPropsPath() - Static method in class ij.Prefs
-
Returns the custom properties (IJ_Props.txt) file path.
- getCustomRoi() - Method in class ij.gui.ImageCanvas
-
- getCValue(int) - Method in class ij.measure.Calibration
-
Converts a raw pixel value to a density calibrated value.
- getCValue(double) - Method in class ij.measure.Calibration
-
Converts a raw pixel value to a density calibrated value.
- getDataObjectArrays(int) - Method in class ij.gui.Plot
-
Get the data of the n-th Plot Object containing xy data in the sequence they were added
(Other Plot Objects such as labels, arrows, lines, shapes and hidden PlotObjects are not counted).
- getDataObjectDesignations() - Method in class ij.gui.Plot
-
Gets an array with human-readable designations of the PlotObjects containing xy data
in the sequence they were added.
- getDebugger() - Method in class ij.macro.Interpreter
-
- getDebugInfo() - Method in class ij.gui.PolygonRoi
-
- getDebugInfo() - Method in class ij.gui.Roi
-
- getDecimalPlaces(double) - Static method in class ij.util.Tools
-
Returns the number of decimal places needed to display a
number, or -2 if exponential notation should be used.
- getDecimalPlaces(double, double) - Static method in class ij.util.Tools
-
Returns the number of decimal places needed to display two numbers,
or -2 if exponential notation should be used.
- getDefault16bitRange() - Static method in class ij.ImagePlus
-
Returns the default 16-bit display range, 0 (auto-scaling), 8, 10, 12, 14, 15 or 16.
- getDefaultColorModel() - Method in class ij.process.ImageProcessor
-
Returns the default grayscale IndexColorModel.
- getDefaultCrossColor() - Static method in class ij.gui.PointRoi
-
Deprecated
- getDefaultDirectory() - Static method in class ij.io.OpenDialog
-
Returns the current working directory, which may be null.
- getDefaultDirectory() - Static method in class ij.Prefs
-
Returns the default directory, if any, or null.
- getDefaultDoubleHeaded() - Static method in class ij.gui.Arrow
-
- getDefaultFillColor() - Static method in class ij.gui.Roi
-
- getDefaultFlags() - Static method in class ij.gui.Plot
-
The default flags, taking PlotWindow.noGridLines, PlotWindow.noTicks into account
- getDefaultFontName() - Static method in class ij.gui.TextRoi
-
Returns the name of the default font.
- getDefaultFontSize() - Static method in class ij.gui.TextRoi
-
Returns the default font size.
- getDefaultFontStyle() - Static method in class ij.gui.TextRoi
-
Returns the default font style.
- getDefaultHeading(int) - Static method in class ij.measure.ResultsTable
-
- getDefaultHeadings() - Static method in class ij.measure.ResultsTable
-
Returns the default headings ("Area","Mean","StdDev", etc.).
- getDefaultHeadSize() - Static method in class ij.gui.Arrow
-
- getDefaultMarkerSize() - Static method in class ij.gui.PointRoi
-
Deprecated.
- getDefaultOutline() - Static method in class ij.gui.Arrow
-
- getDefaultSize() - Static method in class ij.gui.PointRoi
-
- getDefaultStrokeColor() - Static method in class ij.plugin.RectToolOptions
-
- getDefaultStrokeWidth() - Static method in class ij.plugin.RectToolOptions
-
- getDefaultStyle() - Static method in class ij.gui.Arrow
-
- getDefaultType() - Static method in class ij.gui.PointRoi
-
- getDefaultWidth() - Static method in class ij.gui.Arrow
-
- getDescriptionString() - Method in class ij.io.FileSaver
-
Returns a string containing information about the specified image.
- getDimensions() - Method in class ij.ImagePlus
-
Returns the dimensions of this image (width, height, nChannels,
nSlices, nFrames) as a 5 element int array.
- getDimensions(boolean) - Method in class ij.ImagePlus
-
- getDir(String) - Static method in class ij.IJ
-
Alias for getDirectory().
- getDir(String) - Method in class ij.io.Opener
-
- getDir(String) - Static method in class ij.Macro
-
- getDirectory(String) - Static method in class ij.IJ
-
Returns the path to the home ("user.home"), startup, ImageJ, plugins, macros,
luts, temp, current or image directory if title is "home", "startup",
"imagej", "plugins", "macros", "luts", "temp", "current", "default", "image", otherwise,
displays a dialog and returns the path to the directory selected by the user.
- getDirectory() - Method in class ij.io.DirectoryChooser
-
Returns the directory selected by the user.
- getDirectory() - Method in class ij.io.OpenDialog
-
Returns the selected directory.
- getDirectory() - Method in class ij.io.SaveDialog
-
Returns the selected directory.
- getDirectory() - Method in class ij.macro.Functions
-
- getDirectory() - Method in class ij.VirtualStack
-
Returns the path to the directory containing the images.
- getDisplayList() - Method in class ij.gui.ImageCanvas
-
- getDisplayMode() - Method in class ij.ImagePlus
-
Returns the display mode (IJ.COMPOSITE, IJ.COLOR
or IJ.GRAYSCALE) if this is a composite color
image, or 0 if it not.
- getDisplayRangeMax() - Method in class ij.CompositeImage
-
- getDisplayRangeMax() - Method in class ij.ImagePlus
-
- getDisplayRangeMin() - Method in class ij.CompositeImage
-
- getDisplayRangeMin() - Method in class ij.ImagePlus
-
- getDoScaling() - Static method in class ij.process.ImageConverter
-
Returns true if scaling is enabled.
- getDouble(String, double) - Static method in class ij.Prefs
-
Looks up a real number in IJ_Props or IJ_Prefs.txt.
- getDoubleFromArrayList(ArrayList) - Method in class ij.gui.Plot
-
- getDoubleHeaded() - Method in class ij.gui.Arrow
-
- getDrawBackgrounds() - Method in class ij.gui.Overlay
-
- getDrawingFrame() - Method in class ij.gui.Plot
-
Returns the rectangle where the data are plotted.
- getDrawLabels() - Method in class ij.gui.Overlay
-
- getDrawLabels() - Method in class ij.plugin.frame.RoiManager
-
- getDrawNames() - Method in class ij.gui.Overlay
-
- getDrawOffset() - Method in class ij.gui.Line
-
- getDrawOffset() - Method in class ij.gui.PolygonRoi
-
- getDrawOffset() - Method in class ij.gui.Roi
-
Returns true if this is a PolygonRoi that supports sub-pixel
resolution and polygons are drawn on zoomed images offset
down and to the right by 0.5 pixels..
- getDrawStringMode() - Method in class ij.gui.TextRoi
-
- getEditor() - Method in class ij.plugin.NewPlugin
-
Returns the Editor the newly created macro or plugin was opened in.
- getErrorMessage() - Method in class ij.gui.GenericDialog
-
Returns an error message if getNextNumber was unable to convert a
string into a number, otherwise, returns null.
- getErrorMessage() - Static method in class ij.IJ
-
Returns the last error message written by IJ.error() or null if there
was no error since the last time this method was called.
- getErrorMessage() - Method in class ij.macro.Interpreter
-
- getErrorMessage() - Static method in class ij.plugin.frame.RoiManager
-
Returns the most recent I/O error message, or null if there was no error.
- getErrorText() - Method in class ij.plugin.AVI_Reader
-
Returns a description of the error reading the file with makeStack or null if no error
- getEscapeChar() - Method in class ij.util.WildcardMatch
-
Returns the character used to escape the wildcard functionality of a
wildcard character.
- getExamplesMenu(ActionListener) - Static method in class ij.Menus
-
- getExtensionFunctions() - Method in interface ij.macro.MacroExtension
-
- getf(int, int) - Method in class ij.process.ByteProcessor
-
- getf(int) - Method in class ij.process.ByteProcessor
-
- getf(int, int) - Method in class ij.process.ColorProcessor
-
- getf(int) - Method in class ij.process.ColorProcessor
-
- getf(int, int) - Method in class ij.process.FloatProcessor
-
- getf(int) - Method in class ij.process.FloatProcessor
-
- getf(int, int) - Method in class ij.process.ImageProcessor
-
Returns the value of the pixel at (x,y) as a float.
- getf(int) - Method in class ij.process.ImageProcessor
-
- getf(int, int) - Method in class ij.process.ShortProcessor
-
- getf(int) - Method in class ij.process.ShortProcessor
-
- getFeretsDiameter() - Method in class ij.gui.Roi
-
Returns Feret's diameter, the greatest distance between
any two points along the ROI boundary.
- getFeretValues() - Method in class ij.gui.EllipseRoi
-
- getFeretValues() - Method in class ij.gui.OvalRoi
-
Feret (caliper width) values, see ij.gui.Roi.getFeretValues().
- getFeretValues() - Method in class ij.gui.Roi
-
Returns an array with the following values:
[0] "Feret" (maximum caliper width)
[1] "FeretAngle" (angle of diameter with maximum caliper width, between 0 and 180 deg)
[2] "MinFeret" (minimum caliper width)
[3][4] , "FeretX" and "FeretY", the X and Y coordinates of the starting point
(leftmost point) of the maximum-caliper-width diameter.
- getFileFormat(String) - Static method in class ij.io.Opener
-
- getFileInfo() - Method in class ij.ImagePlus
-
Returns a FileInfo object containing information, including the
pixel array, needed to save this image.
- getFileInfo() - Method in class ij.io.ImportDialog
-
Displays the dialog and returns a FileInfo object that can be used to
open the image.
- getFileName() - Method in class ij.io.OpenDialog
-
Returns the selected file name.
- getFileName() - Method in class ij.io.SaveDialog
-
Returns the selected file name.
- getFileName() - Static method in class ij.plugin.MacroInstaller
-
- getFileName(int) - Method in class ij.VirtualStack
-
Returns the file name of the specified slice, were 1<=n<=nslices.
- getFilePath(String) - Static method in class ij.IJ
-
Displays an open file dialog and returns the path to the
choosen file, or returns null if the dialog is canceled.
- getFilePath() - Static method in class ij.plugin.Macro_Runner
-
Returns the file path of the most recently loaded macro or script.
- getFilePointer() - Method in class ij.io.RandomAccessStream
-
- getFileSeparator() - Static method in class ij.Prefs
-
Returns the file.separator system property.
- getFileType(String) - Method in class ij.io.Opener
-
Attempts to determine the image file type by looking for
'magic numbers' and the file name extension.
- getFillColor() - Method in class ij.gui.Roi
-
Returns the fill color used to display this ROI, or null if it is displayed transparently.
- getFilteredList(String[], String, String) - Static method in class ij.plugin.FolderOpener
-
- getFit() - Method in class ij.measure.CurveFitter
-
returns the code of the fit type of the fit performed
- getFitCode(String) - Static method in class ij.measure.CurveFitter
-
Returns the code for a fit with given name as defined in fitList, or -1 if not found
- getFitGoodness() - Method in class ij.measure.CurveFitter
-
Get a measure of "goodness of fit" where 1.0 is best.
- getFixedMax() - Static method in class ij.gui.ProfilePlot
-
Returns the profile plot y-axis max.
- getFixedMin() - Static method in class ij.gui.ProfilePlot
-
Returns the profile plot y-axis min.
- getFlags() - Method in class ij.gui.Plot
-
Returns the flags that control the axes
- getFloatAngle(double, double, double, double) - Method in class ij.gui.Roi
-
Returns the angle in degrees between the specified line and a horizontal line.
- getFloatArray() - Method in class ij.process.ImageProcessor
-
Returns a copy of the pixel data as a 2D float
array with dimensions [x=0..width-1][y=0..height-1].
- getFloatBounds() - Method in class ij.gui.Roi
-
Return this selection's bounding rectangle.
- getFloatBounds() - Method in class ij.process.FloatPolygon
-
- getFloatConvexHull() - Method in class ij.gui.Roi
-
Returns the convex hull of this Roi as a FloatPolygon.
- getFloatConvexHull() - Method in class ij.gui.ShapeRoi
-
- getFloatHeight() - Method in class ij.gui.Roi
-
- getFloatPoints() - Method in class ij.gui.Line
-
Returns, as a FloatPolygon, the two points that define this line.
- getFloatPolygon() - Method in class ij.gui.Line
-
If the width of this line is less than or equal to one, returns the
starting and ending coordinates as a 2-point FloatPolygon, or, if
the width is greater than one, returns an outline of the line as
a 4-point FloatPolygon.
- getFloatPolygon() - Method in class ij.gui.OvalRoi
-
Returns this OvalRoi as a FloatPolygon approximating the ellipse.
- getFloatPolygon() - Method in class ij.gui.PolygonRoi
-
Returns this polygon or polyline as float arrays in image pixel coordinates.
- getFloatPolygon() - Method in class ij.gui.Roi
-
Returns the outline (in image pixel coordinates) as a FloatPolygon
- getFloatPolygon(String) - Method in class ij.gui.Roi
-
Returns the outline in image pixel coordinates,
where options may include "close" to add a point to close the outline
if this is an area roi and the outline is not closed yet.
- getFloatPolygon(double, boolean, boolean, boolean) - Method in class ij.gui.ShapeRoi
-
Returns a FloatPolygon with all vertices of the flattened shape, i.e., the shape approximated by
straight line segments.
- getFloatPolygon(Shape, double, boolean, boolean, boolean) - Method in class ij.gui.ShapeRoi
-
- getFloatPolygon() - Method in class ij.gui.ShapeRoi
-
Returns all vertex points of the shape as approximated by polygons,
in image pixel coordinates
- getFloatPolygon(String) - Method in class ij.gui.ShapeRoi
-
Returns all vertex points of the shape as approximated by polygons,
where options may include "close" to add points to close each subpath, and
"separate" to insert NaN values between subpaths (= individual polygons)
- getFloatWidth() - Method in class ij.gui.Roi
-
- getFont() - Static method in class ij.gui.TextRoi
-
- getFont() - Static method in class ij.Menus
-
- getFont() - Method in class ij.process.ImageProcessor
-
Returns the current font.
- getFont(String, int, float) - Static method in class ij.util.FontUtil
-
Returns a font with the given family name or, if not available, a similar font, e.g.
- getFontMetrics() - Method in class ij.process.ImageProcessor
-
Returns the current FontMetrics.
- getFontSize() - Static method in class ij.Menus
-
Returns the size (in points) used for the fonts in ImageJ menus.
- getForegroundColor() - Static method in class ij.gui.Toolbar
-
- getFormula() - Method in class ij.measure.CurveFitter
-
returns a String with the formula of the fit function used
- getFrame() - Method in class ij.ImagePlus
-
- getFrame(String) - Static method in class ij.WindowManager
-
Obsolete; replaced by getWindow().
- getFrameRate() - Static method in class ij.plugin.Animator
-
Returns the current animation speed in frames per second.
- getFreeColumn(String) - Method in class ij.measure.ResultsTable
-
Sets the heading of the the first available column and
returns that column's index.
- getFrontWindow() - Static method in class ij.WindowManager
-
Obsolete; replaced by getActiveWindow.
- getFullVersion() - Static method in class ij.IJ
-
Returns the ImageJ version and build number as a String, for
example "1.46n05", or 1.46n99 if there is no build number.
- getFunction() - Method in class ij.measure.Calibration
-
Returns the calibration function ID.
- getFunctionValue() - Method in class ij.measure.Minimizer
-
Get the value of the minimum, i.e.
- getGap() - Method in class ij.io.FileInfo
-
Returns the gap between images as a long.
- getGelImage() - Static method in class ij.plugin.GelAnalyzer
-
- getGlobalCalibration() - Method in class ij.ImagePlus
-
Returns the system-wide calibration, or null.
- getGlobalJustification() - Static method in class ij.gui.TextRoi
-
Returns the global (default) justification (LEFT, CENTER or RIGHT).
- getGlobals() - Method in class ij.macro.Program
-
- getGreen(String) - Static method in class ij.plugin.Colors
-
- getGreens() - Method in class ij.LookUpTable
-
- getGuiScale() - Static method in class ij.Prefs
-
Returns the GenericDialog and Command Finder text scale.
- getHashCode() - Method in class ij.gui.Roi
-
Returns a hashcode for this Roi that typically changes
if it is moved, even though it is still the same object.
- getHeader(ImagePlus) - Static method in class ij.plugin.FITS_Writer
-
Extracts the original FITS header from the Properties object of the
ImagePlus image (or from the current slice label in the case of an ImageStack)
and returns it as an array of String objects representing each card.
- getHeadings() - Method in class ij.measure.ResultsTable
-
Returns the column headings as an array of Strings.
- getHeadingsAsVariableNames() - Method in class ij.measure.ResultsTable
-
Returns the column headings; headings not suitable as variable names are converted
to valid variable names by replacing non-fitting characters with underscores and
adding underscores.
- getHeadSize() - Method in class ij.gui.Arrow
-
- getHeight() - Method in class ij.ImagePlus
-
Returns the height of this image in pixels.
- getHeight() - Method in class ij.ImageStack
-
- getHeight() - Method in class ij.plugin.AVI_Reader
-
Returns the image height of the virtual stack
- getHeight() - Method in class ij.plugin.FileInfoVirtualStack
-
- getHeight() - Method in class ij.plugin.ListVirtualStack
-
- getHeight() - Method in class ij.process.ImageProcessor
-
Returns the height of this image in pixels.
- getHideOverlay() - Method in class ij.ImagePlus
-
- getHigherZoomLevel(double) - Static method in class ij.gui.ImageCanvas
-
- getHistogram() - Method in class ij.gui.HistogramWindow
-
- getHistogram() - Method in class ij.process.ByteProcessor
-
- getHistogram(ImageProcessor) - Method in class ij.process.ByteProcessor
-
- getHistogram() - Method in class ij.process.ColorProcessor
-
- getHistogram(ImageProcessor) - Method in class ij.process.ColorProcessor
-
- getHistogram() - Method in class ij.process.FloatProcessor
-
Returns a 256 bin histogram of the current ROI or of the entire image if there is no ROI.
- getHistogram() - Method in class ij.process.ImageProcessor
-
Returns the histogram of the image or ROI.
- getHistogram(int) - Method in class ij.process.ImageProcessor
-
Returns the histogram of the image or ROI, using the specified number of bins.
- getHistogram() - Method in class ij.process.ImageStatistics
-
Returns the histogram as an array of longs.
- getHistogram() - Method in class ij.process.ShortProcessor
-
Returns 65,536 bin histogram of the current ROI, which
can be non-rectangular.
- getHistogramMax() - Method in class ij.process.ImageProcessor
-
Returns the maximum histogram value used for histograms of float images.
- getHistogramMin() - Method in class ij.process.ImageProcessor
-
Returns the minimum histogram value used for histograms of float images.
- getHistogramSize() - Method in class ij.process.ImageProcessor
-
Returns the number of float image histogram bins.
- getHomeDir() - Static method in class ij.Prefs
-
Obsolete, replaced by getImageJDir(), which, unlike this method,
returns a path that ends with File.separator.
- getHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
-
Returns hue, saturation and brightness in 3 byte arrays.
- getHSBStack() - Method in class ij.process.ColorProcessor
-
Returns an ImageStack with three 8-bit slices,
representing hue, saturation and brightness
- getID() - Method in class ij.ImagePlus
-
Returns this image's unique numeric ID.
- getIDList() - Static method in class ij.WindowManager
-
Returns a list of the IDs of open images.
- getImage() - Method in class ij.CompositeImage
-
- getImage() - Method in class ij.gui.ImageCanvas
-
Returns the ImagePlus object that is associated with this ImageCanvas.
- getImage() - Method in class ij.gui.Roi
-
Returns the ImagePlus associated with this ROI, or null.
- getImage() - Static method in class ij.IJ
-
Returns a reference to the active image, or displays an error
message and aborts the plugin or macro if no images are open.
- getImage(Interpreter) - Static method in class ij.IJ
-
The macro interpreter uses this method to call getImage().
- getImage() - Method in class ij.ImagePlus
-
Returns this image as a AWT image.
- getImage() - Static method in class ij.plugin.Orthogonal_Views
-
- getImage(int) - Static method in class ij.WindowManager
-
For IDs less than zero, returns the ImagePlus with the specified ID.
- getImage(String) - Static method in class ij.WindowManager
-
Returns the first image that has the specified title or null if it is not found.
- getImageArray() - Method in class ij.ImageStack
-
Returns the stack as an array of 1D pixel arrays.
- getImageArray() - Method in class ij.VirtualStack
-
Returns null.
- getImageCount() - Static method in class ij.WindowManager
-
Returns the number of open images.
- getImageFromVector(int) - Method in class ij.plugin.frame.SyncWindows
-
Get ImagePlus from Windows-Vector vwins.
- getImageID() - Method in class ij.gui.Roi
-
Returns the ID of the image associated with this ROI.
- getImageID() - Static method in class ij.plugin.Orthogonal_Views
-
- getImageInfo(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.Info
-
Deprecated.
- getImageInfo(ImagePlus) - Method in class ij.plugin.ImageInfo
-
- getImageJDir() - Static method in class ij.Prefs
-
Returns the path, ending in File.separator, to the ImageJ directory.
- getImageJMenu(String) - Static method in class ij.Menus
-
Returns the specified ImageJ menu (e.g., "File>New") or null if it is not found.
- getImagePlus() - Method in class ij.gui.ImageWindow
-
- getImagePlus() - Method in class ij.gui.Plot
-
Returns the plot as an ImagePlus.
- getImagePlus() - Method in class ij.plugin.AVI_Reader
-
Returns the ImagePlus opened by run().
- getImageSize(ImagePlus) - Static method in class ij.gui.ImageWindow
-
- getImageStack() - Method in class ij.ImagePlus
-
Returns the base image stack.
- getImageStackSize() - Method in class ij.ImagePlus
-
If this is a stack, returns the actual number of images in the stack, else returns 1.
- getImagesURL() - Static method in class ij.Prefs
-
Returns the URL of the directory that contains the ImageJ sample images.
- getImageTitleFromVector(int) - Method in class ij.plugin.frame.SyncWindows
-
Get the title of image n from Windows-Vector vwins.
- getImageTitles() - Static method in class ij.WindowManager
-
Returns a list of the titles of all open images.
- getImports() - Method in class ij.plugin.PlugInInterpreter
-
Returns the import statements that are added to the script.
- getIndex(String) - Method in class ij.gui.Overlay
-
Returns the index of the ROI with the specified name, or -1 if not found.
- getIndexes() - Method in class ij.plugin.frame.RoiManager
-
Returns an array of the selected indexes or all indexes if none are selected.
- getIndexesAsString() - Static method in class ij.plugin.frame.RoiManager
-
This is a macro-callable version of getSelectedIndexes().
- getIndexOfImage(ImagePlus) - Method in class ij.plugin.frame.SyncWindows
-
Get index of "image" in vector of synchronized windows, if image is in vector.
- getIndexSampleModel() - Method in class ij.process.ImageProcessor
-
- getInfo() - Method in class ij.ImageJ
-
- getInfo(String) - Method in class ij.plugin.DICOM
-
Returns the DICOM tags of the specified file as a string.
- getInfoProperty() - Method in class ij.ImagePlus
-
Returns the "Info" property string, or null if it is not found.
- getInitialMagnification() - Method in class ij.gui.ImageWindow
-
- getInsets() - Method in class ij.gui.GenericDialog
-
- getInsets() - Method in class ij.gui.ImageWindow
-
Override Container getInsets() to make room for some text above the image.
- getInsets() - Method in class ij.plugin.frame.SyncWindows
-
- getInstance() - Static method in class ij.gui.GenericDialog
-
- getInstance() - Static method in class ij.gui.Toolbar
-
Returns a reference to the ImageJ toolbar.
- getInstance() - Static method in class ij.IJ
-
Returns a reference to the "ImageJ" frame.
- getInstance() - Static method in class ij.macro.Interpreter
-
- getInstance() - Static method in class ij.plugin.frame.Channels
-
Obsolete; always returns null.
- getInstance() - Static method in class ij.plugin.frame.Editor
-
- getInstance() - Static method in class ij.plugin.frame.Recorder
-
- getInstance() - Static method in class ij.plugin.frame.RoiManager
-
Returns a reference to the ROI Manager, or null if it is not open
and a batch mode macro is not running.
- getInstance() - Static method in class ij.plugin.frame.SyncWindows
-
- getInstance() - Static method in class ij.plugin.Orthogonal_Views
-
- getInstance2() - Static method in class ij.plugin.frame.RoiManager
-
Returns a reference to the ROI Manager window or to the
macro batch mode RoiManager, or null if neither exists.
- getInt(Properties, String) - Static method in class ij.OtherInstance
-
- getInt(String, int) - Static method in class ij.Prefs
-
Finds an int in IJ_Props or IJ_Prefs.txt.
- getIntArray() - Method in class ij.process.ImageProcessor
-
Returns a copy of the pixel data as a 2D int array with
dimensions [x=0..width-1][y=0..height-1].
- getInterpolate() - Method in class ij.process.ImageProcessor
-
Returns the value of the interpolate field.
- getInterpolatedPixel(double, double) - Method in class ij.process.ByteProcessor
-
Uses the current interpolation method (BILINEAR or BICUBIC)
to calculate the pixel value at real coordinates (x,y).
- getInterpolatedPixel(double, double) - Method in class ij.process.ColorProcessor
-
Calls getPixelValue(x,y).
- getInterpolatedPixel(double, double) - Method in class ij.process.FloatProcessor
-
Uses the current interpolation method (BILINEAR or BICUBIC)
to calculate the pixel value at real coordinates (x,y).
- getInterpolatedPixel(double, double) - Method in class ij.process.ImageProcessor
-
Uses the current interpolation method (bilinear or bicubic)
to find the pixel value at real coordinates (x,y).
- getInterpolatedPixel(double, double) - Method in class ij.process.ShortProcessor
-
Uses the current interpolation method (BILINEAR or BICUBIC)
to calculate the pixel value at real coordinates (x,y).
- getInterpolatedPolygon(double, boolean) - Method in class ij.gui.PolygonRoi
-
- getInterpolatedPolygon() - Method in class ij.gui.Roi
-
Returns, as a FloatPolygon, an interpolated version
of this selection that has points spaced 1.0 pixel apart.
- getInterpolatedPolygon(double, boolean) - Method in class ij.gui.Roi
-
Returns, as a FloatPolygon, an interpolated version of
this selection with points spaced 'interval' pixels apart.
- getInterpolatedPolygon(FloatPolygon, double, boolean) - Method in class ij.gui.Roi
-
Returns, as a FloatPolygon, an interpolated version of this selection
with points spaced abs('interval') pixels apart.
- getInterpolatedRGBPixel(double, double) - Method in class ij.process.ColorProcessor
-
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
- getInterpolatedValue(double, double) - Method in class ij.process.ImageProcessor
-
Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
- getInterpolationMethod() - Method in class ij.process.ImageProcessor
-
Returns the current interpolation method (NONE, BILINEAR or BICUBIC).
- getInterpolationMethods() - Static method in class ij.process.ImageProcessor
-
- getInverse(ImagePlus) - Method in class ij.gui.Roi
-
Returns the inverted roi, or null if this is not an area roi or cannot be converted to a ShapeRoi.
- getInvertY() - Method in class ij.measure.Calibration
-
Returns the 'invertY' flag.
- getIterations() - Method in class ij.measure.CurveFitter
-
Get number of iterations performed.
- getIterations() - Method in class ij.measure.Minimizer
-
Get number of iterations performed (includes all restarts).
- getJarFileForMenuEntry(String) - Static method in class ij.Menus
-
- getJpegQuality() - Static method in class ij.io.FileSaver
-
Returns the current JPEG quality setting (0-100).
- getJSPrefix(String) - Static method in class ij.plugin.frame.Editor
-
- getJustification() - Method in class ij.gui.TextRoi
-
Returns the value of the 'justification' instance variable (LEFT, CENTER or RIGHT).
- getLab(ImageProcessor, byte[], byte[], byte[]) - Static method in class ij.plugin.frame.ColorThresholder
-
Returns Lab in 3 byte arrays.
- getLabel(char) - Method in class ij.gui.Plot
-
Gets the label String of the xLabel ('x'), yLabel('y') or the legend ('l').
- getLabel(int) - Method in class ij.measure.ResultsTable
-
Returns the label of the specified row.
- getLabelColor() - Method in class ij.gui.Overlay
-
- getLabelFont() - Method in class ij.gui.Overlay
-
- getLast() - Method in class ij.util.FloatArray
-
Returns the last element of this FloatArray.
- getLastBatchModeImage() - Static method in class ij.macro.Interpreter
-
- getLastColumn() - Method in class ij.measure.ResultsTable
-
Returns the index of the last used column, or -1 if no columns are used.
- getLastCounter() - Method in class ij.gui.PointRoi
-
Returns the index of the last counter.
- getLastDirectory() - Static method in class ij.io.OpenDialog
-
Returns the path to the directory that contains the last file
opened, or null if a file has not been opened.
- getLastFileInfo() - Static method in class ij.io.ImportDialog
-
Returns the FileInfo object used to import the last raw image,
or null if a raw image has not been imported.
- getLastName() - Static method in class ij.io.OpenDialog
-
Returns the name of the last file opened by the user
using a file open or file save dialog, or using drag and drop.
- getLength() - Method in class ij.gui.EllipseRoi
-
Returns the perimeter of this ellipse.
- getLength() - Method in class ij.gui.Line
-
Returns the length of this line.
- getLength() - Method in class ij.gui.OvalRoi
-
Returns the perimeter length using Ramanujan's approximation for the circumference of an ellipse
- getLength() - Method in class ij.gui.PolygonRoi
-
Returns the perimeter (for ROIs) or length (for lines).
- getLength() - Method in class ij.gui.Roi
-
Returns the perimeter length.
- getLength() - Method in class ij.gui.ShapeRoi
-
Returns the perimeter of this ShapeRoi.
- getLength(boolean) - Method in class ij.process.FloatPolygon
-
- getLimits() - Method in class ij.gui.Plot
-
Returns the current limits as an array xMin, xMax, yMin, yMax.
- getLine(double, double, double, double) - Method in class ij.process.ImageProcessor
-
Returns an array containing the pixel values along the
line starting at (x1,y1) and ending at (x2,y2).
- getLine(int) - Method in class ij.text.TextPanel
-
Returns the specified line as a string.
- getLineCount() - Method in class ij.text.TextPanel
-
Returns the number of lines of text in this TextPanel.
- getLineNumber() - Method in class ij.macro.Interpreter
-
- getLineWidth() - Method in class ij.process.ImageProcessor
-
Returns the current line width.
- getList() - Method in class ij.plugin.frame.RoiManager
-
Deprecated.
- getListenerCount() - Static method in class ij.Executer
-
- getLoadRate(double, ImagePlus) - Static method in class ij.io.Opener
-
- getLocalCalibration() - Method in class ij.ImagePlus
-
Returns this image's local calibration, ignoring
the "Global" calibration flag.
- getLocation(String) - Static method in class ij.Prefs
-
Uses the keyword key to retrieve a location
from the preferences file.
- getLocationAsString(int, int) - Method in class ij.ImagePlus
-
Converts the current cursor location to a string.
- getLog() - Static method in class ij.IJ
-
Returns the contents of the Log window or null if the Log window is not open.
- getLongFilePointer() - Method in class ij.io.RandomAccessStream
-
- getLowerZoomLevel(double) - Static method in class ij.gui.ImageCanvas
-
- getLut() - Method in class ij.process.ImageProcessor
-
- getLuts() - Method in class ij.CompositeImage
-
- getLuts() - Static method in class ij.IJ
-
Returns, as an array of strings, a list of the LUTs in the Image/Lookup Tables menu.
- getLuts() - Method in class ij.ImagePlus
-
Returns an array containing the lookup tables used by this image,
one per channel, or an empty array if this is an RGB image.
- getLutUpdateMode() - Method in class ij.process.ImageProcessor
-
Returns the LUT update mode, which can be RED_LUT, BLACK_AND_WHITE_LUT,
OVER_UNDER_LUT or NO_LUT_UPDATE.
- getMacroCode(String, ImagePlus) - Method in class ij.gui.TextRoi
-
Used by the Recorder for recording the text tool.
- getMacroCount() - Method in class ij.Menus
-
- getMacroCount() - Method in class ij.plugin.MacroInstaller
-
- getMacroCount() - Method in class ij.plugin.tool.MacroToolRunner
-
- getMacroProgram() - Method in class ij.plugin.tool.MacroToolRunner
-
- getMacroProgram() - Method in class ij.plugin.tool.PlugInTool
-
- getMacroShortcuts() - Static method in class ij.Menus
-
Returns the hashtable that associates keyboard shortcuts with macros.
- getMacrosMenu() - Static method in class ij.Menus
-
- getMacrosPath() - Static method in class ij.Menus
-
Returns the path to the macros directory or
null if the macros directory was not found.
- getMagnification() - Method in class ij.gui.ImageCanvas
-
- getMagnification() - Method in class ij.gui.Roi
-
- getMapSize() - Method in class ij.LookUpTable
-
- getMask() - Method in class ij.gui.Arrow
-
- getMask() - Method in class ij.gui.OvalRoi
-
- getMask() - Method in class ij.gui.PointRoi
-
- getMask() - Method in class ij.gui.PolygonRoi
-
- getMask() - Method in class ij.gui.Roi
-
Always returns null for rectangular Roi's
- getMask() - Method in class ij.gui.ShapeRoi
-
Returns this ROI's mask pixels as a ByteProcessor with pixels "in" the mask
set to white (255) and pixels "outside" the mask set to black (0).
- getMask() - Method in class ij.ImagePlus
-
For images with irregular ROIs, returns a byte mask, otherwise, returns
null.
- getMask() - Method in class ij.process.ImageProcessor
-
For images with irregular ROIs, returns a mask, otherwise,
returns null.
- getMask(int, int) - Method in class ij.process.PolygonFiller
-
Returns a byte mask containing a filled version of the polygon.
- getMaskArray() - Method in class ij.process.ImageProcessor
-
Returns a reference to the mask pixel array, or null if there is no mask.
- getMatchingCoords(ImageCanvas, ImageCanvas, int, int) - Method in class ij.plugin.frame.SyncWindows
-
Get Screen Coordinates for ImageCanvas ic matching
the OffScreen Coordinates of the current ImageCanvas.
- getMax() - Method in class ij.gui.ProfilePlot
-
Returns the calculated maximum value.
- getMax(double[]) - Static method in class ij.measure.CurveFitter
-
Gets index of highest value in an array.
- getMax() - Method in class ij.process.ByteProcessor
-
Returns the largest displayed pixel value.
- getMax() - Method in class ij.process.ColorProcessor
-
Returns the largest displayed pixel value.
- getMax() - Method in class ij.process.FloatProcessor
-
Returns the largest displayed pixel value.
- getMax() - Method in class ij.process.ImageProcessor
-
Returns the largest displayed pixel value.
- getMax() - Method in class ij.process.ShortProcessor
-
Returns the largest displayed pixel value.
- getMaxima(ImageProcessor, double, boolean) - Method in class ij.plugin.filter.MaximumFinder
-
Finds the image maxima and returns them as a Polygon, where
poly.npoints is the number of maxima.
- getMaxima(ImageProcessor, double, boolean, boolean) - Method in class ij.plugin.filter.MaximumFinder
-
Finds the image maxima and returns them as a Polygon, where poly.npoints is
the number of maxima.
- getMaximum() - Method in class ij.gui.ScrollbarWithLabel
-
- getMaximum() - Method in class ij.util.ArrayUtil
-
The maximum value
- getMaximumBounds() - Method in class ij.gui.ImageWindow
-
- getMaxIterations() - Method in class ij.measure.CurveFitter
-
Get maximum number of iterations allowed (sum of iteration count for all restarts)
- getMaxIterations() - Method in class ij.measure.Minimizer
-
Get maximum number of iterations allowed.
- getMaxRestarts() - Method in class ij.measure.Minimizer
-
Get maximum number of minimization restarts to do
- getMaxThreshold() - Method in class ij.process.ImageProcessor
-
Returns the upper threshold level.
- getMaxWindowBounds(Point) - Static method in class ij.gui.GUI
-
- getMaxWindowBounds(Component) - Static method in class ij.gui.GUI
-
- getMaxWindowBounds() - Static method in class ij.gui.GUI
-
- getMean() - Method in class ij.util.ArrayUtil
-
Average value
- getMeasurements() - Static method in class ij.plugin.filter.Analyzer
-
- getMemorySetting() - Method in class ij.plugin.Memory
-
- getMenuBar() - Static method in class ij.Menus
-
- getMenus() - Method in class ij.macro.Program
-
- getMessage() - Method in class ij.gui.GenericDialog
-
Returns a reference to the Label or MultiLineLabel created by the
last addMessage() call, or null if addMessage() was not called.
- getMethod() - Static method in class ij.plugin.frame.ThresholdAdjuster
-
Returns the current thresholding method ("Default", "Huang", etc).
- getMethods() - Static method in class ij.process.AutoThresholder
-
- getMin() - Method in class ij.gui.ProfilePlot
-
Returns the calculated minimum value.
- getMin() - Method in class ij.process.ByteProcessor
-
Returns the smallest displayed pixel value.
- getMin() - Method in class ij.process.ColorProcessor
-
Returns the smallest displayed pixel value.
- getMin() - Method in class ij.process.FloatProcessor
-
Returns the smallest displayed pixel value.
- getMin() - Method in class ij.process.ImageProcessor
-
Returns the smallest displayed pixel value.
- getMin() - Method in class ij.process.ShortProcessor
-
Returns the smallest displayed pixel value.
- getMinimizer() - Method in class ij.measure.CurveFitter
-
Returns a reference to the Minimizer used, for accessing Minimizer methods directly.
- getMinimum() - Method in class ij.gui.ScrollbarWithLabel
-
- getMinimum() - Method in class ij.util.ArrayUtil
-
The minimum value
- getMinimumSize() - Method in class ij.gui.ImagePanel
-
- getMinimumSize() - Method in class ij.gui.MultiLineLabel
-
- getMinimumSize() - Method in class ij.gui.Plot
-
The minimum plot size including borders, in pixels (at scale=1)
- getMinimumSize() - Method in class ij.gui.ScrollbarWithLabel
-
- getMinimumSize() - Method in class ij.gui.Toolbar
-
- getMinimumSize() - Method in class ij.gui.TrimmedButton
-
- getMinMax(double[]) - Static method in class ij.util.Tools
-
- getMinMax(float[]) - Static method in class ij.util.Tools
-
- getMinThreshold() - Method in class ij.process.ImageProcessor
-
Returns the lower threshold level.
- getMode() - Method in class ij.CompositeImage
-
- getMode() - Static method in class ij.plugin.frame.ThresholdAdjuster
-
Returns the current mode ("Red","B&W" or"Over/Under").
- getMode() - Static method in class ij.plugin.WandToolOptions
-
- getModeAsString() - Method in class ij.CompositeImage
-
- getModifiers() - Method in class ij.gui.ImageCanvas
-
Returns the mouse event modifiers.
- getMultipleWildcardChar() - Method in class ij.util.WildcardMatch
-
Returns the character used to specify any amount of characters.
- getMultiPointMode() - Static method in class ij.gui.Toolbar
-
Returns 'true' if the multi-point tool is enabled.
- getName() - Method in class ij.gui.Roi
-
Returns the name of this ROI, or null.
- getName(String) - Method in class ij.io.Opener
-
- getName(String) - Static method in class ij.Macro
-
- getName() - Method in class ij.measure.CurveFitter
-
returns the name of the fit function of the fit performed
- getName(int) - Method in class ij.plugin.frame.RoiManager
-
Returns the name of the ROI with the specified index,
or null if the index is out of range.
- getName(String) - Static method in class ij.plugin.frame.RoiManager
-
Returns the name of the ROI with the specified index.
- getName() - Method in class ij.plugin.PlugInInterpreter
-
Returns the name of this PlugInInterpreter.
- getName() - Method in class ij.plugin.TextReader
-
Returns the file name.
- getNbCpus() - Static method in class ij.util.ThreadUtil
-
- getNChannels() - Method in class ij.ImagePlus
-
Returns the number of channels.
- getNChannels() - Method in class ij.process.ColorProcessor
-
Returns the number of color channels of the image, i.e., 3.
- getNChannels() - Method in class ij.process.ImageProcessor
-
Returns the number of color channels in the image.
- getNCoordinates() - Method in class ij.gui.PolygonRoi
-
Returns the number of points that define this PolygonRoi.
- getNCounters() - Method in class ij.gui.PointRoi
-
Returns the number of counters.
- getNDimensions() - Method in class ij.ImagePlus
-
Returns the number of dimensions (2, 3, 4 or 5).
- getNeighborhood(int, int, double[][]) - Method in class ij.process.ImageProcessor
-
Experimental
- getNextBoolean() - Method in class ij.gui.GenericDialog
-
Returns the state of the next checkbox.
- getNextChoice() - Method in class ij.gui.GenericDialog
-
Returns the selected item in the next popup menu.
- getNextChoiceIndex() - Method in class ij.gui.GenericDialog
-
Returns the index of the selected item in the next popup menu.
- getNextNumber() - Method in class ij.gui.GenericDialog
-
Returns the contents of the next numeric field,
or NaN if the field does not contain a number.
- getNextRadioButton() - Method in class ij.gui.GenericDialog
-
Returns the selected item in the next radio button group.
- getNextString() - Method in class ij.gui.GenericDialog
-
Returns the contents of the next text field.
- getNextText() - Method in class ij.gui.GenericDialog
-
Returns the contents of the next text area.
- getNFrames() - Method in class ij.ImagePlus
-
Returns the number of frames (time-points).
- getNonImageTitles() - Static method in class ij.WindowManager
-
Returns an array containing the titles of non-image Frames and Dialogs.
- getNonImageWindows() - Static method in class ij.WindowManager
-
Returns an array containing a list of the non-image Frames.
- getNonSplineCoordinates() - Method in class ij.gui.PolygonRoi
-
- getNonSplineFloatPolygon() - Method in class ij.gui.PolygonRoi
-
- getNScrollbars() - Method in class ij.gui.StackWindow
-
- getNSlices() - Method in class ij.ImagePlus
-
Returns the image depth (number of z-slices).
- getNthImageID(int) - Static method in class ij.WindowManager
-
Returns the ID of the Nth open image.
- getNumber(String, double) - Static method in class ij.IJ
-
Allows the user to enter a number in a dialog box.
- getNumericFields() - Method in class ij.gui.GenericDialog
-
Returns the Vector containing the numeric TextFields.
- getNumericProperty(String) - Method in class ij.ImagePlus
-
Returns the numeric value from the "Info" property string
associated with 'key', or NaN if the key is not found or the
value associated with the key is not numeric.
- getNumParams() - Method in class ij.measure.CurveFitter
-
Get number of parameters for current fit formula
Do not use before 'doFit', because the fit function would be undefined.
- getNumParams(int) - Static method in class ij.measure.CurveFitter
-
Returns the number of parameters for a given fit type, except for the 'custom' fit,
where the number of parameters is given by the equation: see getNumParams(String)
- getNumParams(String) - Static method in class ij.measure.CurveFitter
-
Returns the number of parameters for a custom equation given as a macro String,
like "y = a + b*x + c*x*x" .
- getNumPlotObjects() - Method in class ij.gui.Plot
-
Returns the number of PlotObjects (curves, labels, ...) passed with the constructor or added by 'add' or 'draw' methods.
- getNumTools() - Method in class ij.gui.Toolbar
-
- getOffset() - Method in class ij.io.FileInfo
-
Returns the offset as a long.
- getOpacity() - Method in class ij.gui.ImageRoi
-
Returns the current opacity.
- getOpenAsHyperStack() - Method in class ij.ImagePlus
-
- getOpenRecentMenu() - Static method in class ij.Menus
-
- getOpenUsingPlugins() - Static method in class ij.io.Opener
-
Returns the state of the openUsingPlugins flag.
- getOptions() - Static method in class ij.Macro
-
If a command started using run(name, options) is running,
and the current thread is the same thread,
returns the options string, otherwise, returns null.
- getOrCreateResultsTable() - Method in class ij.text.TextPanel
-
Returns the ResultsTable associated with this TextPanel, or
attempts to create one and returns the created table.
- getOrientation() - Method in class ij.gui.ScrollbarWithLabel
-
- getOriginalFileInfo() - Method in class ij.ImagePlus
-
Returns the FileInfo object that was used to open this image.
- getOutline() - Method in class ij.gui.Arrow
-
- getOutputImage() - Method in class ij.plugin.filter.ParticleAnalyzer
-
Returns the "Outlines", "Masks", "Elipses" or "Count Masks" image,
or null if "Nothing" is selected in the "Show:" menu.
- getOutputType() - Static method in class ij.plugin.filter.EDM
-
Returns the current output type (BYTE_OVERWRITE, BYTE, SHORT or FLOAT)
- getOvalToolType() - Static method in class ij.gui.Toolbar
-
Returns the oval tool type (OVAL_ROI, ELLIPSE_ROI or BRUSH_ROI).
- getOverlay() - Method in class ij.gui.ImageCanvas
-
Use ImagePlus.getOverlay().
- getOverlay() - Method in class ij.ImagePlus
-
Returns the current overly, or null if this image does not have an overlay.
- getOverlay(ImagePlus) - Static method in class ij.io.FileSaver
-
- getOverlay() - Method in class ij.process.ImageProcessor
-
- getPaintPending() - Method in class ij.gui.ImageCanvas
-
- getParams() - Method in class ij.gui.EllipseRoi
-
Returns x1, y1, x2, y2 and aspectRatio as a 5 element array.
- getParams() - Method in class ij.gui.RotatedRectRoi
-
Returns x1, y1, x2, y2 and width as a 5 element array.
- getParams() - Method in class ij.measure.CurveFitter
-
Get the result of fitting, i.e.
- getParams() - Method in class ij.measure.Minimizer
-
Get the result, i.e., the set of parameter values (i.e., variable values)
from the best corner of the simplex.
- getPasteMode() - Method in class ij.gui.Roi
-
Returns the current paste transfer mode, or NOT_PASTING (-1)
if no paste operation is in progress.
- getPath() - Method in class ij.io.OpenDialog
-
Returns the selected file path or null if the dialog was canceled.
- getPath(ImagePlus, String) - Static method in class ij.io.SaveDialog
-
- getPixel(int, int) - Method in class ij.ImagePlus
-
Returns the pixel value at (x,y) as a 4 element array.
- getPixel(int, int) - Method in class ij.process.ByteProcessor
-
- getPixel(int, int) - Method in class ij.process.ColorProcessor
-
- getPixel(int, int, int[]) - Method in class ij.process.ColorProcessor
-
Returns the 3 samples for the pixel at (x,y) in an array of int.
- getPixel(int, int) - Method in class ij.process.FloatProcessor
-
Returns a pixel value that must be converted using
Float.intBitsToFloat().
- getPixel(int, int, int[]) - Method in class ij.process.FloatProcessor
-
Returns the value of the pixel at (x,y) in a
one element int array.
- getPixel(int, int) - Method in class ij.process.ImageProcessor
-
Returns the value of the pixel at (x,y).
- getPixel(int, int, int[]) - Method in class ij.process.ImageProcessor
-
Returns the samples for the pixel at (x,y) in an int array.
- getPixel(int, int) - Method in class ij.process.ShortProcessor
-
- getPixelCount() - Method in class ij.process.ImageProcessor
-
- getPixelInterpolated(double, double) - Method in class ij.process.ByteProcessor
-
- getPixelInterpolated(double, double) - Method in class ij.process.ColorProcessor
-
- getPixelInterpolated(double, double) - Method in class ij.process.FloatProcessor
-
- getPixelInterpolated(double, double) - Method in class ij.process.ImageProcessor
-
Uses the current interpolation method to find the pixel value at real coordinates (x,y).
- getPixelInterpolated(double, double) - Method in class ij.process.ShortProcessor
-
- getPixels() - Method in class ij.gui.Line
-
Returns the pixel values along this line.
- getPixels(int) - Method in class ij.gui.PlotVirtualStack
-
Returns the pixel array for the specified slice, were 1<=n<=nslices.
- getPixels(int) - Method in class ij.ImageStack
-
Returns the pixel array for the specified slice, were 1<=n<=nslices.
- getPixels() - Method in class ij.process.ByteProcessor
-
Returns a reference to the byte array containing this image's
pixel data.
- getPixels() - Method in class ij.process.ColorProcessor
-
Returns a reference to the int array containing
this image's pixel data.
- getPixels() - Method in class ij.process.FloatProcessor
-
Returns a reference to the float array containing
this image's pixel data.
- getPixels() - Method in class ij.process.ImageProcessor
-
Returns a reference to this image's pixel array.
- getPixels() - Method in class ij.process.ShortProcessor
-
Returns a reference to the short array containing this image's
pixel data.
- getPixels(int) - Method in class ij.VirtualStack
-
Returns the pixel array for the specified slice, were 1<=n<=nslices.
- getPixelsCopy() - Method in class ij.process.ByteProcessor
-
Returns a copy of the pixel data.
- getPixelsCopy() - Method in class ij.process.ColorProcessor
-
Returns a copy of the pixel data.
- getPixelsCopy() - Method in class ij.process.FloatProcessor
-
Returns a copy of the pixel data.
- getPixelsCopy() - Method in class ij.process.ImageProcessor
-
Returns a copy of the pixel data.
- getPixelsCopy() - Method in class ij.process.ShortProcessor
-
Returns a copy of the pixel data.
- getPixelValue(int, int) - Method in class ij.process.ByteProcessor
-
- getPixelValue(int, int) - Method in class ij.process.ColorProcessor
-
Converts the specified pixel to grayscale using the
formula g=(r+g+b)/3 and returns it as a float.
- getPixelValue(int, int) - Method in class ij.process.FloatProcessor
-
Returns the value of the pixel at (x,y) as a float.
- getPixelValue(int, int) - Method in class ij.process.ImageProcessor
-
Returns the value of the pixel at (x,y).
- getPixelValue(int, int) - Method in class ij.process.ShortProcessor
-
Returns the value of the pixel at (x,y) as a float.
- getPlot() - Method in class ij.gui.PlotCanvas
-
Returns the Plot displayed in this canvas
- getPlot() - Method in interface ij.gui.PlotMaker
-
Returns a profile plot.
- getPlot() - Method in class ij.gui.PlotWindow
-
Returns the Plot associated with this PlotWindow.
- getPlot() - Method in class ij.gui.ProfilePlot
-
- getPlot() - Method in class ij.ImagePlus
-
- getPlot() - Method in class ij.measure.CurveFitter
-
- getPlot(int) - Method in class ij.measure.CurveFitter
-
- getPlot() - Method in class ij.plugin.Profiler
-
- getPlot(ImagePlus) - Static method in class ij.plugin.ZAxisProfiler
-
Returns a Plot of the selection mean gray value versus slice number.
- getPlot(ImagePlus, String) - Static method in class ij.plugin.ZAxisProfiler
-
Returns a Plot of the selection mean versus slice number for the
specified hyperstack, where 'options' can be "time" or "z-axis".
- getPlot() - Method in class ij.plugin.ZAxisProfiler
-
- getPlotObjectDesignations() - Method in class ij.gui.Plot
-
Gets an array with human-readable designations of the PlotObjects (curves, labels, ...)
in the sequence they were added (the object passed with the constructor is first,
even though it is plotted last).
- getPlotObjectIndex(float[][]) - Method in class ij.gui.Plot
-
Returns the index of the first plot object with x,y data (points, line) or arrows
with all data equal to those given.
- getPlotObjectLabel(int) - Method in class ij.gui.Plot
-
Get the label the i-th PlotObject (in the sequence how they were added, including hidden ones).
- getPlotObjectStyle(int) - Method in class ij.gui.Plot
-
Get the style of the i-th PlotObject (curve, label, ...) in the sequence
they were added (including hidden ones), as String with comma delimiters:
Main Color, Secondary Color (or "none"), Line Width [, Symbol shape for XY_DATA] [,hidden]
- getPlotSize() - Method in class ij.gui.ProfilePlot
-
Returns the size of the plot that createWindow() creates.
- getPluginCount() - Method in class ij.Menus
-
- getPlugins() - Static method in class ij.Menus
-
Returns a list of the plugins in the plugins menu.
- getPlugInsPath() - Static method in class ij.Menus
-
Returns the path to the user plugins directory or
null if the plugins directory was not found.
- getPlugInTool() - Static method in class ij.gui.Toolbar
-
- getPointPosition(int) - Method in class ij.gui.PointRoi
-
Returns the stack slice of the point with the given index, or 0 if no slice defined for this point
- getPoints() - Method in class ij.gui.Line
-
Returns, as a Polygon, the two points that define this line.
- getPointType() - Method in class ij.gui.PointRoi
-
Returns the point type (0=hybrid, 1=cross, 2=dot, 3=circle).
- getPolygon() - Method in class ij.gui.Line
-
If the width of this line is less than or equal to one, returns the
starting and ending coordinates as a 2-point Polygon, or, if
the width is greater than one, returns an outline of the line as
a 4-point Polygon.
- getPolygon() - Method in class ij.gui.OvalRoi
-
Returns this OvalRoi as a Polygon that outlines the mask, in image pixel coordinates.
- getPolygon() - Method in class ij.gui.PolygonRoi
-
Returns this PolygonRoi as a Polygon.
- getPolygon() - Method in class ij.gui.Roi
-
Returns the outline of this selection as a Polygon, or
null if this is a straight line selection.
- getPolygon() - Method in class ij.gui.ShapeRoi
-
- getPopupMenu() - Static method in class ij.Menus
-
- getPort() - Static method in class ij.ImageJ
-
Returns the port that ImageJ checks on startup to see if another instance is running.
- getPosition() - Method in class ij.gui.Roi
-
Returns the stack position (image number) of this ROI, or
zero if the ROI is not associated with a particular stack image.
- getPowerSpectrum() - Method in class ij.process.FHT
-
Returns an 8-bit power spectrum, log-scaled to 1-254.
- getPrecision() - Static method in class ij.plugin.filter.Analyzer
-
Returns the number of digits displayed to the right of decimal point.
- getPreferredLocation() - Method in class ij.ImageJ
-
- getPreferredSize() - Method in class ij.gui.ImageCanvas
-
- getPreferredSize() - Method in class ij.gui.ImagePanel
-
- getPreferredSize() - Method in class ij.gui.MultiLineLabel
-
- getPreferredSize() - Method in class ij.gui.ProgressBar
-
- getPreferredSize() - Method in class ij.gui.ScrollbarWithLabel
-
- getPreferredSize() - Method in class ij.gui.Toolbar
-
- getPreferredSize() - Method in class ij.gui.TrimmedButton
-
- getPrefsDir() - Static method in class ij.Prefs
-
Returns the path to the directory where the
preferences file (IJPrefs.txt) is saved.
- getPrefsDirectory() - Static method in class ij.OtherInstance
-
- getPreviewCheckbox() - Method in class ij.gui.GenericDialog
-
Returns a reference to the Preview checkbox.
- getProcessor(int) - Method in class ij.CompositeImage
-
- getProcessor() - Method in class ij.gui.ImageRoi
-
- getProcessor() - Method in class ij.gui.Plot
-
Draws the plot (if not done before) in an ImageProcessor and returns the ImageProcessor with the plot.
- getProcessor(int) - Method in class ij.gui.PlotVirtualStack
-
Returns an ImageProcessor for the specified slice,
were 1<=n<=nslices.
- getProcessor() - Static method in class ij.IJ
-
Returns the active image or stack slice as an ImageProcessor, or displays
an error message and aborts the plugin or macro if no images are open.
- getProcessor() - Method in class ij.ImagePlus
-
Returns a reference to the current ImageProcessor.
- getProcessor(int) - Method in class ij.ImageStack
-
Returns an ImageProcessor for the specified slice,
were 1<=n<=nslices.
- getProcessor(int) - Method in class ij.plugin.AVI_Reader
-
Returns an ImageProcessor for the specified slice of this virtual stack (if it is one)
where 1<=n<=nslices.
- getProcessor(int) - Method in class ij.plugin.FileInfoVirtualStack
-
Returns an ImageProcessor for the specified image,
were 1<=n<=nImages.
- getProcessor(int) - Method in class ij.plugin.ListVirtualStack
-
Returns an ImageProcessor for the specified slice,
were 1<=n<=nslices.
- getProcessor(int) - Method in class ij.VirtualStack
-
Returns an ImageProcessor for the specified slice,
were 1<=n<=nslices.
- getProfile() - Method in class ij.gui.ProfilePlot
-
Returns the profile plot data.
- getProgram() - Method in class ij.plugin.MacroInstaller
-
- getProgressBar() - Method in class ij.ImageJ
-
- getProgressIncrement(int, int) - Method in class ij.process.ImageProcessor
-
- getProjection() - Method in class ij.plugin.ZProjector
-
Retrieve results of most recent projection operation.
- getProp(String) - Method in class ij.ImagePlus
-
Deprecated.
- getProperties() - Method in class ij.gui.Roi
-
- getProperties() - Method in class ij.ImagePlus
-
Returns this image's Properties.
- getProperties() - Method in class ij.VirtualStack
-
Returns the ImagePlus Properties assoctated with the current slice, or null.
- getProperty(String) - Method in class ij.gui.Roi
-
- getProperty(String) - Static method in class ij.IJ
-
Returns the object in IJ.properties associated
with 'key', or null if 'key' is not found.
- getProperty(String) - Method in class ij.ImagePlus
-
Returns the property associated with 'key', or null if it is not found.
- getPropertyCount() - Method in class ij.gui.Roi
-
- getPrototypeOverlay() - Method in class ij.gui.Roi
-
- getQuality() - Static method in class ij.plugin.JpegWriter
-
- getRadioButtonGroups() - Method in class ij.gui.GenericDialog
-
Returns the Vector that contains the RadioButtonGroups.
- getRawInstance() - Static method in class ij.plugin.frame.RoiManager
-
- getRawLength() - Method in class ij.gui.Line
-
Returns the length of this line in pixels.
- getRawStatistics() - Method in class ij.ImagePlus
-
- getRawType(int) - Static method in class ij.macro.ExtensionDescriptor
-
- getRawValue(double) - Method in class ij.measure.Calibration
-
Converts a density calibrated value into a raw pixel value.
- getRawX(double) - Method in class ij.measure.Calibration
-
Converts a x-coordinate in physical units to pixels.
- getRawY(double) - Method in class ij.measure.Calibration
-
Converts a y-coodinate in physical units to pixels.
- getRawY(double, int) - Method in class ij.measure.Calibration
-
Converts a y-coodinate in physical units to pixels,
taking into account the 'invertY' flag.
- getRawZ(double) - Method in class ij.measure.Calibration
-
Converts a z-coodinate in physical units to pixels.
- getRectToolType() - Static method in class ij.gui.Toolbar
-
Returns the rectangle tool type (RECT_ROI, ROUNDED_RECT_ROI or ROTATED_RECT_ROI).
- getRed(String) - Static method in class ij.plugin.Colors
-
- getRedirectImage(ImagePlus) - Static method in class ij.plugin.filter.Analyzer
-
Returns the image selected in the "Redirect To:" popup
menu of the Analyze/Set Measurements dialog, or null
if "None" is selected, the image was not found or the
image is not the same size as currentImage.
- getReds() - Method in class ij.LookUpTable
-
- getResiduals() - Method in class ij.measure.CurveFitter
-
Returns residuals array, i.e., differences between data and curve.
- getRestarts() - Method in class ij.measure.CurveFitter
-
Get maximum number of simplex restarts to do.
- getResultsTable() - Method in class ij.gui.HistogramWindow
-
Returns the histogram values as a ResultsTable.
- getResultsTable() - Method in class ij.gui.Plot
-
Creates a ResultsTable with the plot data.
- getResultsTable(boolean) - Method in class ij.gui.Plot
-
Creates a ResultsTable with the data of the plot.
- getResultsTable() - Method in class ij.gui.PlotWindow
-
Returns the plot values as a ResultsTable.
- getResultsTable() - Static method in class ij.measure.ResultsTable
-
Returns the ResultsTable used by the Measure command.
- getResultsTable() - Static method in class ij.plugin.filter.Analyzer
-
Returns the default results table.
- getResultsTable() - Method in class ij.text.TextPanel
-
Returns the ResultsTable associated with this TextPanel, or null.
- getResultsTable() - Method in class ij.text.TextWindow
-
Returns the ResultsTable associated with this TextWindow, or null.
- getResultString() - Method in class ij.measure.CurveFitter
-
Get a string with detailed description of the curve fitting results (several lines,
including the fit parameters).
- getResultsWindow() - Static method in class ij.measure.ResultsTable
-
Returns the "Results" TextWindow.
- getReturnValue() - Method in class ij.plugin.PlugInInterpreter
-
Returns the value returned by the script, if any, or null.
- getRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
-
Returns the red, green and blue planes as 3 byte arrays.
- getRGBWeights() - Method in class ij.process.ColorProcessor
-
Returns the values set by setRGBWeights(), or null if setRGBWeights() has not been called.
- getRoi() - Method in class ij.ImagePlus
-
Returns the current selection, or null if there is no selection.
- getRoi() - Method in class ij.ImageStack
-
- getRoi() - Method in class ij.io.RoiDecoder
-
Returns the ROI.
- getRoi(int) - Method in class ij.plugin.frame.RoiManager
-
Returns a reference to the ROI at the specified index.
- getRoi() - Method in class ij.process.ImageProcessor
-
Returns a Rectangle that represents the current
region of interest.
- getRoiIndex(Roi) - Method in class ij.plugin.frame.RoiManager
-
Returns the index of the specified Roi, or -1 if it is not found.
- getRoiManager() - Static method in class ij.plugin.frame.RoiManager
-
Returns a reference to the ROI Manager and opens
the "ROI Manager" window if it is not already open.
- getRois() - Method in class ij.gui.ShapeRoi
-
Converts a Shape into Roi object(s).
- getROIs() - Method in class ij.plugin.frame.RoiManager
-
Deprecated.
- getRoisAsArray() - Method in class ij.plugin.frame.RoiManager
-
Returns the ROIs as an array.
- getRoot() - Method in class ij.plugin.ControlPanel
-
- getRotationCenter() - Method in class ij.gui.Line
-
- getRotationCenter() - Method in class ij.gui.Roi
-
- getRoundRectArcSize() - Method in class ij.gui.Roi
-
Obsolete; replaced by getCornerDiameter().
- getRoundRectArcSize() - Static method in class ij.gui.Toolbar
-
Returns the rounded rectangle arc size, or 0 if the rounded rectangle tool is not enabled.
- getRow(int, int, int[], int) - Method in class ij.process.ImageProcessor
-
Returns the pixel values along the horizontal line starting at (x,y).
- getRow(int, int, float[], int) - Method in class ij.process.ImageProcessor
-
Returns the pixel values along the horizontal line starting at (x,y).
- getRowAsString(int) - Method in class ij.measure.ResultsTable
-
Returns a tab or comma delimited string representing the
given row, where 0<=row<=size()-1.
- getRSquared() - Method in class ij.measure.CurveFitter
-
Returns R^2, where 1.0 is best.
- getSampleImageNames() - Static method in class ij.plugin.URLOpener
-
- getSaveAsMenu() - Static method in class ij.Menus
-
- getScale(float[]) - Static method in class ij.plugin.filter.Convolver
-
- getScaledStroke() - Method in class ij.gui.Roi
-
- getScaleToFit() - Method in class ij.gui.ImageCanvas
-
- getScreenBounds(Point, boolean) - Static method in class ij.gui.GUI
-
Get maximum bounds for the screen that contains a given point.
- getScreenBounds(Component, boolean) - Static method in class ij.gui.GUI
-
Get maximum bounds for the screen that contains a given component.
- getScreenBounds(Point) - Static method in class ij.gui.GUI
-
- getScreenBounds(Component) - Static method in class ij.gui.GUI
-
- getScreenBounds() - Static method in class ij.gui.GUI
-
- getScreenSize() - Static method in class ij.IJ
-
Returns the size, in pixels, of the primary display.
- getSD() - Method in class ij.measure.CurveFitter
-
Returns the standard deviation of the residuals.
- getSD() - Static method in class ij.plugin.filter.Filters
-
Returns the default standard deviation used by Process/Noise/Add Specified Noise.
- getSelectedIndex() - Method in class ij.plugin.frame.RoiManager
-
Returns the index of the first selected ROI or -1 if no ROI is selected.
- getSelectedIndexes() - Method in class ij.plugin.frame.RoiManager
-
Returns an array of the selected indexes.
- getSelectedRoisAsArray() - Method in class ij.plugin.frame.RoiManager
-
Returns the selected ROIs as an array, or
all the ROIs if none are selected.
- getSelectionCoordinates() - Method in class ij.gui.ShapeRoi
-
Used by the getSelectionCoordinates macro function
- getSelectionEnd() - Method in class ij.text.TextPanel
-
Returns the index of the last selected line, or -1
if there is no slection.
- getSelectionStart() - Method in class ij.text.TextPanel
-
Returns the index of the first selected line, or -1
if there is no slection.
- getSerializedImage() - Method in class ij.gui.ImageRoi
-
Returns a serialized version of the image.
- getShape() - Method in class ij.gui.ShapeRoi
-
Returns a reference to the Shape object encapsulated by this ShapeRoi.
- getShapeAsArray() - Method in class ij.gui.ShapeRoi
-
Retrieves the end points and control points of the path as a float array.
- getShapeRoi() - Method in class ij.io.RoiDecoder
-
- getShortcuts() - Static method in class ij.Menus
-
Returns the hashtable that associates shortcuts with commands.
- getShortcuts() - Method in class ij.plugin.CommandLister
-
- getShortSliceLabel(int) - Method in class ij.ImageStack
-
Returns a shortened version (up to the first 60 characters or first newline and
suffix removed) of the label of the specified slice.
- getShortTitle() - Method in class ij.ImagePlus
-
Returns a shortened version of image name that does not
include spaces or a file name extension.
- getShowAllColor() - Static method in class ij.gui.ImageCanvas
-
Obsolete
- getShowAllList() - Method in class ij.gui.ImageCanvas
-
- getShowAllROIs() - Method in class ij.gui.ImageCanvas
-
Obsolete
- getShowLabels() - Method in class ij.gui.PointRoi
-
- getSimilarFontsList(String) - Static method in class ij.util.FontUtil
-
For a few basic font types, gets a list of replacement font families
Note that java's 'SansSerif' has wider characters (significantly different metrics) than the other
sans-serif fonts in the list; thus it should be considered a fallback option only.
- getSingleWildcardChar() - Method in class ij.util.WildcardMatch
-
Returns the character used to specify exactly one character.
- getSixteenBitRanges() - Static method in class ij.plugin.frame.ContrastAdjuster
-
- getSize() - Method in class ij.gui.Plot
-
The size of the plot including borders with axis labels etc., in pixels
- getSize() - Method in class ij.gui.PlotVirtualStack
-
Returns the number of slices in this stack.
- getSize() - Method in class ij.gui.PointRoi
-
Returns the point size (0-4).
- getSize() - Static method in class ij.gui.TextRoi
-
- getSize() - Method in class ij.ImageStack
-
Returns the number of slices in this stack.
- getSize() - Method in class ij.macro.Program
-
- getSize() - Method in class ij.plugin.AVI_Reader
-
Returns the number of images in this virtual stack (if it is one)
- getSize() - Method in class ij.plugin.FileInfoVirtualStack
-
Returns the number of images in this stack.
- getSize() - Method in class ij.plugin.ListVirtualStack
-
Returns the number of images in this stack.
- getSize() - Method in class ij.VirtualStack
-
Returns the number of slices in this stack.
- getSizeInBytes() - Method in class ij.ImagePlus
-
Returns the size of this image in bytes.
- getSlice() - Method in class ij.ImagePlus
-
- getSliceLabel(int) - Method in class ij.gui.PlotVirtualStack
-
- getSliceLabel(int) - Method in class ij.ImageStack
-
Returns the label of the specified slice, were 1<=n<=nslices.
- getSliceLabel(int) - Method in class ij.plugin.AVI_Reader
-
Returns the label of the specified slice in this virtual stack (if it is one).
- getSliceLabel(int) - Method in class ij.plugin.FileInfoVirtualStack
-
Returns the label of the Nth image.
- getSliceLabel(int) - Method in class ij.plugin.ListVirtualStack
-
Returns the name of the specified image.
- getSliceLabel(int) - Method in class ij.VirtualStack
-
Returns the label of the Nth image.
- getSliceLabels() - Method in class ij.ImageStack
-
Returns the slice labels as an array of Strings.
- getSliceNumber(String) - Method in class ij.gui.ImageCanvas
-
- getSliceNumber() - Method in class ij.plugin.filter.PlugInFilterRunner
-
Return the slice number currently processed by the calling thread.
- getSliceNumber(String) - Method in class ij.plugin.frame.RoiManager
-
Returns the slice number associated with the specified name,
or -1 if the name does not include a slice number.
- getSliceNumber() - Method in class ij.process.ImageProcessor
-
- getSliderHeight() - Method in class ij.gui.ImageWindow
-
- getSliders() - Method in class ij.gui.GenericDialog
-
Returns the Vector containing the sliders (Scrollbars).
- getSnapshotPixels() - Method in class ij.process.ByteProcessor
-
- getSnapshotPixels() - Method in class ij.process.ColorProcessor
-
Returns a reference to the snapshot pixel array.
- getSnapshotPixels() - Method in class ij.process.FloatProcessor
-
- getSnapshotPixels() - Method in class ij.process.ImageProcessor
-
Returns a reference to the snapshot (undo) buffer, or null.
- getSnapshotPixels() - Method in class ij.process.ShortProcessor
-
- getSortedFitList() - Static method in class ij.measure.CurveFitter
-
Returns an array of fit names with nicer sorting
- getSourceImage() - Method in interface ij.gui.PlotMaker
-
Returns the ImagePlus used to generate the profile plots.
- getSourceImage() - Method in class ij.plugin.Profiler
-
- getSourceImage() - Method in class ij.plugin.ZAxisProfiler
-
- getSrcRect() - Method in class ij.gui.ImageCanvas
-
- getStack() - Method in class ij.gui.Plot
-
Returns the virtual stack created by addToStack().
- getStack() - Method in class ij.ImagePlus
-
Returns the image stack.
- getStackIndex(int, int, int) - Method in class ij.ImagePlus
-
Returns that stack index (one-based) corresponding to the specified position.
- getStackSize() - Method in class ij.ImagePlus
-
If this is a stack, returns the number of slices, else returns 1.
- getStartTime() - Method in class ij.ImagePlus
-
Returns the time in milliseconds when
startTiming() was last called.
- getStartupMacro() - Method in class ij.plugin.Startup
-
- getState() - Method in class ij.gui.Roi
-
- getStaticGlobalCalibration() - Static method in class ij.ImagePlus
-
This is a version of getGlobalCalibration() that can be called from a static context.
- getStatistics() - Method in class ij.gui.Roi
-
- getStatistics() - Method in class ij.ImagePlus
-
Get calibrated statistics for this image or ROI, including
histogram, area, mean, min and max, standard
deviation and mode.
- getStatistics(int) - Method in class ij.ImagePlus
-
Returns an ImageStatistics object generated using the
specified measurement options.
- getStatistics(int, int) - Method in class ij.ImagePlus
-
Returns an ImageStatistics object generated using the
specified measurement options and histogram bin count.
- getStatistics(int, int, double, double) - Method in class ij.ImagePlus
-
Returns an ImageStatistics object generated using the
specified measurement options, histogram bin count
and histogram range.
- getStatistics() - Method in class ij.process.ImageProcessor
-
Calculates and returns complete uncalibrated (raw)
statistics for this image or ROI but it is up to 70 times
slower than getStats().
- getStatistics(ImageProcessor) - Static method in class ij.process.ImageStatistics
-
Calculates and returns uncalibrated (raw) statistics for the
specified image, including histogram, area, mean, min and
max, standard deviation and mode.
- getStatistics(ImageProcessor, int, Calibration) - Static method in class ij.process.ImageStatistics
-
Calculates and returns statistics for the specified
image using the specified measurent options
and calibration.
- getStatistics(double[]) - Static method in class ij.util.Tools
-
- getStats() - Method in class ij.process.ImageProcessor
-
Calculates and returns uncalibrated statistics for this image or ROI,
including histogram, area, mean, min and max, standard deviation,
and mode.
- getStatus() - Method in class ij.measure.CurveFitter
-
- getStatusBar() - Method in class ij.ImageJ
-
- getStatusString() - Method in class ij.measure.CurveFitter
-
Get a short text with a short description of the status.
- getString(String, String) - Static method in class ij.IJ
-
Allows the user to enter a string in a dialog box.
- getString() - Method in class ij.macro.Variable
-
- getString(String) - Static method in class ij.Prefs
-
Finds a string in IJ_Props or IJ_Prefs.txt.
- getString(String, String) - Static method in class ij.Prefs
-
Finds an string in IJ_Props or IJ_Prefs.txt.
- getStringBounds(String) - Method in class ij.process.ImageProcessor
-
Returns a rectangle enclosing the pixels affected by drawString
assuming it is drawn at (x=0, y=0).
- getStringFields() - Method in class ij.gui.GenericDialog
-
Returns the Vector containing the string TextFields.
- getStringProperty(String) - Method in class ij.ImagePlus
-
Returns the string value from the "Info" property string
associated with 'key', or null if the key is not found.
- getStringValue(String, int) - Method in class ij.measure.ResultsTable
-
Returns the string value of the given column and row,
where row must be greater than or equal zero
and less than the value returned by size().
- getStringValue(int, int) - Method in class ij.measure.ResultsTable
-
Returns the string value of the given column and row, where
column must be less than or equal the value returned by
getLastColumn() and row must be greater than or equal
zero and less than the value returned by size().
- getStringVariable(String) - Method in class ij.macro.Interpreter
-
- getStringWidth(String) - Method in class ij.process.ImageProcessor
-
Returns the width in pixels of the specified string, including any background
space (whitespace) between the x drawing coordinate and the string, not necessarily
including all whitespace at the right.
- getStringWidth(String, FontMetrics, Graphics) - Static method in class ij.util.Java2
-
- getStroke() - Method in class ij.gui.Roi
-
Returns the Stroke used to draw this ROI, or null if no Stroke is used.
- getStrokeColor() - Method in class ij.gui.Roi
-
Returns the the color used to draw the ROI outline or null if the default color is being used.
- getStrokeWidth() - Method in class ij.gui.Roi
-
Returns the lineWidth.
- getStubPath() - Static method in class ij.OtherInstance
-
- getStyle() - Method in class ij.gui.Arrow
-
- getStyle() - Static method in class ij.gui.TextRoi
-
- getSumResidualsSqr() - Method in class ij.measure.CurveFitter
-
- getSymbolTable() - Method in class ij.macro.Program
-
- getT() - Method in class ij.ImagePlus
-
Returns the current hyperstack frame position.
- getTableAsImage() - Method in class ij.measure.ResultsTable
-
Returns the contents of this ResultsTable as a FloatProcessor.
- getTag(ImagePlus, String) - Static method in class ij.util.DicomTools
-
Returns the value (as a string) of the specified DICOM tag id (in the form "0018,0050")
of the specified image or stack slice.
- getTagName(String) - Static method in class ij.plugin.DICOM
-
Returns the name of the specified DICOM tag id.
- getTagName(String) - Static method in class ij.util.DicomTools
-
Returns the name of the specified DICOM tag id.
- getTempCurrentImage() - Static method in class ij.WindowManager
-
Returns the temporary current image for this thread, or null.
- getText() - Method in class ij.gui.TextRoi
-
- getText() - Method in class ij.plugin.frame.Editor
-
- getText() - Method in class ij.plugin.frame.Recorder
-
- getText() - Method in class ij.text.TextPanel
-
Returns all the text as a string.
- getTextArea() - Method in class ij.plugin.frame.Editor
-
- getTextArea1() - Method in class ij.gui.GenericDialog
-
Returns a reference to textArea1.
- getTextArea2() - Method in class ij.gui.GenericDialog
-
Returns a reference to textArea2.
- getTextPanel() - Static method in class ij.IJ
-
Returns a reference to the "Results" window TextPanel.
- getTextPanel() - Method in class ij.text.TextWindow
-
Returns a reference to this TextWindow's TextPanel.
- getThread() - Method in class ij.macro.MacroRunner
-
- getThreads() - Static method in class ij.Prefs
-
Returns the number of threads used by PlugInFilters to process images and stacks.
- getThreshold(AutoThresholder.Method, int[]) - Method in class ij.process.AutoThresholder
-
Calculates and returns a threshold using the specified
method and 256 bin histogram.
- getThreshold(String, int[]) - Method in class ij.process.AutoThresholder
-
- getThresholdColorModel() - Method in class ij.process.ImageProcessor
-
- getTiffFileInfo(String) - Static method in class ij.io.Opener
-
Returns the FileInfo of the specified TIFF file.
- getTiffInfo() - Method in class ij.io.TiffDecoder
-
- getTimeUnit() - Method in class ij.measure.Calibration
-
Returns the distance unit (e.g.
- getTitle() - Method in class ij.gui.Plot
-
Returns the title of the image showing the plot (if any) or title of the plot
- getTitle() - Method in class ij.ImagePlus
-
Returns the image name.
- getTitle() - Method in class ij.measure.ResultsTable
-
- getTolerance() - Static method in class ij.plugin.WandToolOptions
-
- getToolIcon() - Method in class ij.plugin.tool.ArrowTool
-
- getToolIcon() - Method in class ij.plugin.tool.BrushTool
-
- getToolIcon() - Method in class ij.plugin.tool.OverlayBrushTool
-
- getToolIcon() - Method in class ij.plugin.tool.PixelInspectionTool
-
- getToolIcon() - Method in class ij.plugin.tool.PlugInTool
-
Return the string encoding of the tool icon.
- getToolIcon() - Method in class ij.plugin.tool.RoiRotationTool
-
- getToolId() - Static method in class ij.gui.Toolbar
-
Returns the ID of the current tool (Toolbar.RECTANGLE, Toolbar.OVAL, etc.).
- getToolId(String) - Method in class ij.gui.Toolbar
-
Returns the ID of the tool whose name (the description displayed in the status bar)
starts with the specified string, or -1 if the tool is not found.
- getToolName() - Static method in class ij.gui.Toolbar
-
Returns the name of the current tool.
- getToolName() - Static method in class ij.IJ
-
Returns the name of the current tool.
- getToolName() - Method in class ij.plugin.tool.ArrowTool
-
- getToolName() - Method in class ij.plugin.tool.BrushTool
-
- getToolName() - Method in class ij.plugin.tool.OverlayBrushTool
-
- getToolName() - Method in class ij.plugin.tool.PixelInspectionTool
-
- getToolName() - Method in class ij.plugin.tool.PlugInTool
-
Return the tool name.
- getToolName() - Method in class ij.plugin.tool.RoiRotationTool
-
- getTPosition() - Method in class ij.gui.Roi
-
Returns the frame position of this ROI, or zero
if this ROI is not associated with a particular frame.
- getTransferData(DataFlavor) - Method in class ij.plugin.Clipboard
-
- getTransferDataFlavors() - Method in class ij.plugin.Clipboard
-
- getTransparentIndex() - Static method in class ij.Prefs
-
Returns the transparent index (0-255), or -1 if transparency is disabled.
- getType() - Method in class ij.gui.Roi
-
- getType() - Method in class ij.ImagePlus
-
Returns the current image type (ImagePlus.GRAY8, ImagePlus.GRAY16,
ImagePlus.GRAY32, ImagePlus.COLOR_256 or ImagePlus.COLOR_RGB).
- getTypeAsString() - Method in class ij.gui.Roi
-
Convenience method that converts Roi type to a human-readable form.
- getTypeName(int) - Static method in class ij.macro.ExtensionDescriptor
-
- getTypes() - Method in class ij.gui.Plot
-
Returns an array of the available curve types ("Line", "Bar", "Circle", etc).
- getUMeans() - Static method in class ij.plugin.filter.Analyzer
-
Returns an array containing the first 20 uncalibrated means.
- getUncalibratedLength() - Method in class ij.gui.PolygonRoi
-
- getUnionOfBounds() - Static method in class ij.gui.GUI
-
- getUniqueName(String) - Static method in class ij.WindowManager
-
Returns a unique name by adding, before the extension, -1, -2, etc.
- getUnit() - Method in class ij.measure.Calibration
-
Returns the default length unit (e.g.
- getUnitIncrement() - Method in class ij.gui.ScrollbarWithLabel
-
- getUnits() - Method in class ij.measure.Calibration
-
Returns the plural form of the length unit (e.g.
- getValue(String) - Method in class ij.gui.GenericDialog
-
- getValue() - Method in class ij.gui.ScrollbarWithLabel
-
- getValue(String, String, String) - Static method in class ij.Macro
-
- getValue() - Method in class ij.macro.Variable
-
- getValue(int, int) - Method in class ij.measure.ResultsTable
-
- getValue(String, int) - Method in class ij.measure.ResultsTable
-
Returns the value of the specified column and row, where
column is the column heading and row is a number greater
than or equal zero and less than value returned by size().
- getValue(int, int) - Method in class ij.process.ImageProcessor
-
Returns the value of the pixel at (x,y), a calibrated
value from 8-bit and 16-bit images, an intensity value
from RGB images and a double value from 32-bit images.
- getValueAsDouble(int, int) - Method in class ij.measure.ResultsTable
-
Returns the value of the given column and row, where
column must be less than or equal the value returned by
getLastColumn() and row must be greater than or equal
zero and less than the value returned by size().
- getValueUnit() - Method in class ij.measure.Calibration
-
Returns the value unit.
- getVariable(String) - Method in class ij.macro.Interpreter
-
- getVariable2(String) - Method in class ij.macro.Interpreter
-
- getVariableAsString(String) - Method in class ij.macro.Interpreter
-
- getVariableNames() - Method in class ij.macro.Interpreter
-
Returns the names of all variables, without any annotation
- getVariables() - Method in class ij.macro.Interpreter
-
Returns the names of all variables and functions with human-readable annotations
- getVariance() - Method in class ij.util.ArrayUtil
-
Variance value
- getVersion() - Static method in class ij.IJ
-
Returns the ImageJ version number as a string.
- getVersion() - Method in class ij.plugin.PlugInInterpreter
-
Returns the version of ImageJ at the time this plugin was created.
- getVisibleAmount() - Method in class ij.gui.ScrollbarWithLabel
-
- getVoxel(int, int, int) - Method in class ij.ImageStack
-
Returns, as a double, the value of the specified voxel.
- getVoxelDepth(ImageStack) - Static method in class ij.util.DicomTools
-
Calculates the voxel depth of the specified DICOM stack based
on the distance between the first and last slices.
- getVoxels(int, int, int, int, int, int, float[]) - Method in class ij.ImageStack
-
- getVoxels(int, int, int, int, int, int, float[], int) - Method in class ij.ImageStack
-
- getWeightingFactors() - Static method in class ij.process.ColorProcessor
-
Returns the three weighting factors used by getPixelValue(),
getHistogram() and convertToByte() to do color conversions.
- getWidth() - Static method in class ij.gui.Line
-
- getWidth() - Method in class ij.ImagePlus
-
Returns the width of this image in pixels.
- getWidth() - Method in class ij.ImageStack
-
- getWidth() - Method in class ij.plugin.AVI_Reader
-
Returns the image width of the virtual stack
- getWidth() - Method in class ij.plugin.FileInfoVirtualStack
-
- getWidth() - Method in class ij.plugin.ListVirtualStack
-
- getWidth() - Method in class ij.process.ImageProcessor
-
Returns the width of this image in pixels.
- getWindow() - Method in class ij.ImagePlus
-
Returns the ImageWindow that is being used to display
this image.
- getWindow(String) - Static method in class ij.WindowManager
-
Returns the window (a Frame or a Dialog) with the specified
title, or null if a window with that title is not found.
- getWindowCount() - Static method in class ij.WindowManager
-
Returns the number of open image windows.
- getX(double) - Method in class ij.measure.Calibration
-
Converts a x-coodinate in pixels to physical units (e.g.
- getXBase() - Method in class ij.gui.Roi
-
- getXCoordinates() - Method in class ij.gui.PolygonRoi
-
Obsolete; replaced by either getPolygon() or getFloatPolygon().
- getXPoints() - Method in class ij.measure.CurveFitter
-
returns the array with the x data
- getXUnit() - Method in class ij.measure.Calibration
-
Returns the X length unit.
- getXValues() - Method in class ij.gui.HistogramWindow
-
- getXValues() - Method in class ij.gui.Plot
-
Get the x coordinates of the data set passed with the constructor (if not null)
or otherwise of the data set of the first 'addPoints'.
- getXValues() - Method in class ij.gui.PlotWindow
-
- getXZImage() - Method in class ij.plugin.Orthogonal_Views
-
- getY(double) - Method in class ij.measure.Calibration
-
Converts a y-coordinate in pixels to physical units (e.g.
- getY(double, int) - Method in class ij.measure.Calibration
-
Converts a y-coordinate in pixels to physical units (e.g.
- getYBase() - Method in class ij.gui.Roi
-
- getYCoordinates() - Method in class ij.gui.PolygonRoi
-
Obsolete; replaced by either getPolygon() or getFloatPolygon().
- getYPoints() - Method in class ij.measure.CurveFitter
-
returns the array with the y data
- getYUnit() - Method in class ij.measure.Calibration
-
Returns the Y length unit, or the default unit if 'yunit' is null.
- getYUV(ImageProcessor, byte[], byte[], byte[]) - Method in class ij.plugin.frame.ColorThresholder
-
- getYValues() - Method in class ij.gui.Plot
-
Get the y coordinates of the data set passed with the constructor (if not null)
or otherwise of the data set of the first 'addPoints'.
- getYValues() - Method in class ij.gui.PlotWindow
-
- getYZImage() - Method in class ij.plugin.Orthogonal_Views
-
- getZ() - Method in class ij.ImagePlus
-
Returns the current hyperstack slice position.
- getZ(double) - Method in class ij.measure.Calibration
-
Converts a z-coordinate in pixels to physical units (e.g.
- getZeroBasedMaxBounds() - Static method in class ij.gui.GUI
-
- getZeroTransparent() - Method in class ij.gui.ImageRoi
-
- getZPosition() - Method in class ij.gui.Roi
-
Returns the slice position of this ROI, or zero
if this ROI is not associated with a particular slice.
- getZUnit() - Method in class ij.measure.Calibration
-
Returns the Z length unit, or the default unit if 'zunit' is null.
- GIF - Static variable in class ij.io.Opener
-
- GIF_OR_JPG - Static variable in class ij.io.FileInfo
-
- GIF_Reader - Class in ij.plugin
-
This plugin opens GIFs and Animated GIFs.
- GIF_Reader() - Constructor for class ij.plugin.GIF_Reader
-
- GifWriter - Class in ij.plugin
-
Saves the active image in GIF format, or as an animated GIF if the image is a stack.
- GifWriter() - Constructor for class ij.plugin.GifWriter
-
- gLUT1 - Variable in class ij.process.ImageProcessor
-
- gLUT2 - Variable in class ij.process.ImageProcessor
-
- GRAY12_UNSIGNED - Static variable in class ij.io.FileInfo
-
12-bit unsigned integer (0-4095).
- GRAY16 - Static variable in class ij.gui.NewImage
-
- GRAY16 - Static variable in class ij.ImagePlus
-
16-bit grayscale (unsigned)
- GRAY16_SIGNED - Static variable in class ij.io.FileInfo
-
16-bit signed integer (-32768-32767).
- GRAY16_UNSIGNED - Static variable in class ij.io.FileInfo
-
16-bit unsigned integer (0-65535).
- GRAY24_UNSIGNED - Static variable in class ij.io.FileInfo
-
24-bit unsigned integer.
- GRAY32 - Static variable in class ij.gui.NewImage
-
- GRAY32 - Static variable in class ij.ImagePlus
-
32-bit floating-point grayscale
- GRAY32_FLOAT - Static variable in class ij.io.FileInfo
-
32-bit floating-point.
- GRAY32_INT - Static variable in class ij.io.FileInfo
-
32-bit signed integer.
- GRAY32_UNSIGNED - Static variable in class ij.io.FileInfo
-
32-bit unsigned integer.
- GRAY64_FLOAT - Static variable in class ij.io.FileInfo
-
64-bit floating-point.
- GRAY8 - Static variable in class ij.gui.NewImage
-
- GRAY8 - Static variable in class ij.ImagePlus
-
8-bit grayscale (unsigned)
- GRAY8 - Static variable in class ij.io.FileInfo
-
8-bit unsigned integer (0-255).
- GRAYSCALE - Static variable in class ij.CompositeImage
-
Display modes (note: TRANSPARENT mode has not yet been implemented)
- GRAYSCALE - Static variable in class ij.IJ
-
Image display modes
- green - Variable in class ij.plugin.filter.RGBStackSplitter
-
- greens - Variable in class ij.io.FileInfo
-
- Grid - Class in ij.plugin
-
This class implements the Analyze/Tools/Grid command.
- Grid() - Constructor for class ij.plugin.Grid
-
- GroupedZProjector - Class in ij.plugin
-
This plugin implements the Image/Stacks/Tools/Grouped Z Project command.
- GroupedZProjector() - Constructor for class ij.plugin.GroupedZProjector
-
- groupZProject(ImagePlus, int, int) - Method in class ij.plugin.GroupedZProjector
-
- grow(int, int) - Method in class ij.gui.EllipseRoi
-
- grow(int, int) - Method in class ij.gui.FreehandRoi
-
- grow(int, int) - Method in class ij.gui.Line
-
- grow(int, int) - Method in class ij.gui.PolygonRoi
-
- grow(int, int) - Method in class ij.gui.Roi
-
- grow(int, int) - Method in class ij.gui.RotatedRectRoi
-
- GT - Static variable in interface ij.macro.MacroConstants
-
- GTE - Static variable in interface ij.macro.MacroConstants
-
- GUI - Class in ij.gui
-
This class consists of static GUI utility methods.
- GUI() - Constructor for class ij.gui.GUI
-
- GUI_SCALE - Static variable in class ij.Prefs
-
- radioButtonGroups - Variable in class ij.gui.GenericDialog
-
- rand(int, int) - Method in class ij.plugin.filter.SaltAndPepper
-
- RANDOM - Static variable in interface ij.macro.MacroConstants
-
- RandomAccessStream - Class in ij.io
-
This class uses a memory cache to allow seeking within
an InputStream.
- RandomAccessStream(InputStream) - Constructor for class ij.io.RandomAccessStream
-
Constructs a RandomAccessStream from an InputStream.
- RandomAccessStream(RandomAccessFile) - Constructor for class ij.io.RandomAccessStream
-
Constructs a RandomAccessStream from an RandomAccessFile.
- rank(ImageProcessor, double, int) - Method in class ij.plugin.filter.RankFilters
-
Filters an image by any method except 'despecle' or 'remove outliers'.
- rank(ImageProcessor, double, int, int, float) - Method in class ij.plugin.filter.RankFilters
-
Filters an image by any method except 'despecle' (for 'despeckle', use 'median' and radius=1)
- rank(double[]) - Static method in class ij.util.Tools
-
Returns a sorted list of indices of the specified double array.
- rank(String[]) - Static method in class ij.util.Tools
-
Returns a sorted list of indices of the specified String array.
- RankFilters - Class in ij.plugin.filter
-
This plugin implements the Mean, Minimum, Maximum, Variance, Median, Open Maxima, Close Maxima,
Remove Outliers, Remove NaNs and Despeckle commands.
- RankFilters() - Constructor for class ij.plugin.filter.RankFilters
-
- raster - Variable in class ij.process.ImageProcessor
-
- RAW - Static variable in class ij.io.FileInfo
-
- RAW - Static variable in class ij.io.Opener
-
- Raw - Class in ij.plugin
-
This plugin implements the File/Import/Raw command.
- Raw() - Constructor for class ij.plugin.Raw
-
- RAW_INTEGRATED_DENSITY - Static variable in class ij.measure.ResultsTable
-
- rc2DFHT(float[], boolean, int) - Method in class ij.process.FHT
-
Performs a 2D FHT (Fast Hartley Transform).
- read() - Method in class ij.io.RandomAccessStream
-
- read(byte[], int, int) - Method in class ij.io.RandomAccessStream
-
- readDouble() - Method in class ij.io.RandomAccessStream
-
- readFloat() - Method in class ij.io.RandomAccessStream
-
- readFully(byte[]) - Method in class ij.io.RandomAccessStream
-
- readFully(byte[], int) - Method in class ij.io.RandomAccessStream
-
- readInt() - Method in class ij.io.RandomAccessStream
-
- readLong() - Method in class ij.io.RandomAccessStream
-
- readPixels(InputStream) - Method in class ij.io.ImageReader
-
Reads the image from the InputStream and returns the pixel
array (byte, short, int or float).
- readPixels(InputStream, long) - Method in class ij.io.ImageReader
-
Skips the specified number of bytes, then reads an image and
returns the pixel array (byte, short, int or float).
- readPixels(String) - Method in class ij.io.ImageReader
-
Reads the image from a URL and returns the pixel array (byte,
short, int or float).
- readShort() - Method in class ij.io.RandomAccessStream
-
- RecentOpener - Class in ij
-
Opens, in a separate thread, files selected from the File/Open Recent submenu.
- record - Static variable in class ij.plugin.frame.Recorder
-
This variable is true if the recorder is running.
- record(String) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String, String) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String, String, String) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int, String) - Static method in class ij.plugin.frame.Recorder
-
- record(String, double, double) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String, int, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
-
- record(String, int, int, int, int, double) - Static method in class ij.plugin.frame.Recorder
-
- record(String, String, String, int, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
-
- RECORD_STARTS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Record starting coordinates so outline can be recreated later using doWand(x,y).
- recordCall(String) - Static method in class ij.plugin.frame.Recorder
-
- recordCall(String, boolean) - Static method in class ij.plugin.frame.Recorder
-
- recordCall(String, String) - Static method in class ij.plugin.frame.Recorder
-
- Recorder - Class in ij.plugin.frame
-
This is ImageJ's macro recorder.
- Recorder() - Constructor for class ij.plugin.frame.Recorder
-
- Recorder(boolean) - Constructor for class ij.plugin.frame.Recorder
-
- recordInMacros - Static variable in class ij.plugin.frame.Recorder
-
Set this variable true to allow recording within IJ.run() calls.
- recordOption(String, String) - Static method in class ij.plugin.frame.Recorder
-
- recordOption(String) - Static method in class ij.plugin.frame.Recorder
-
- recordPath(String, String) - Static method in class ij.plugin.frame.Recorder
-
- recordRoi(Roi) - Static method in class ij.plugin.frame.Recorder
-
- recordRoi(Polygon, int) - Static method in class ij.plugin.frame.Recorder
-
- recordScriptRoi(Polygon, int) - Static method in class ij.plugin.frame.Recorder
-
- recordSetMinAndMax(double, double) - Static method in class ij.plugin.frame.ContrastAdjuster
-
- recordStarts - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- recordString(String) - Static method in class ij.plugin.frame.Recorder
-
- RECT - Static variable in interface ij.measure.Measurements
-
- RECT_ROI - Static variable in class ij.gui.Toolbar
-
- RECTANGLE - Static variable in class ij.gui.Roi
-
- RECTANGLE - Static variable in class ij.gui.Toolbar
-
- RectToolOptions - Class in ij.plugin
-
This plugin implements the rounded rectangle tool dialog box.
- RectToolOptions() - Constructor for class ij.plugin.RectToolOptions
-
- red - Variable in class ij.plugin.filter.RGBStackSplitter
-
- RED_LUT - Static variable in class ij.process.ImageProcessor
-
- redirectErrorMessages() - Static method in class ij.IJ
-
Causes IJ.error() output to be temporarily redirected to the "Log" window.
- redirectErrorMessages(boolean) - Static method in class ij.IJ
-
Set 'true' and IJ.error() output will be temporarily redirected to the "Log" window.
- redirectingErrorMessages() - Static method in class ij.IJ
-
Returns the state of the 'redirectErrorMessages' flag, which is set by File/Import/Image Sequence.
- redirectSystem(boolean) - Static method in class ij.io.LogStream
-
Redirects all output sent to System.out and System.err to ImageJ's log console
using the default prefixes.
- redirectSystem() - Static method in class ij.io.LogStream
-
Redirects all output sent to System.out and System.err to ImageJ's log console
using the default prefixes.
- redirectSystemErr(String) - Static method in class ij.io.LogStream
-
Redirects all output sent to System.err to ImageJ's log console.
- redirectSystemOut(String) - Static method in class ij.io.LogStream
-
Redirects all output sent to System.out to ImageJ's log console.
- redrawGrid() - Method in class ij.gui.Plot
-
- reds - Variable in class ij.io.FileInfo
-
- reduce(ImagePlus) - Method in class ij.plugin.HyperStackReducer
-
- reduceHyperstack(ImagePlus, int, boolean) - Method in class ij.plugin.StackReducer
-
- reduceStack(ImagePlus, int) - Method in class ij.plugin.StackReducer
-
- reflexAngle - Static variable in class ij.Prefs
-
Angle tool measures reflex angle
- register(Class) - Static method in class ij.IJ
-
Adds the specified class to a Vector to keep it from being garbage
collected, which would cause the classes static fields to be reset.
- register(Class) - Method in class ij.ImageJ
-
Adds the specified class to a Vector to keep it from being
garbage collected, causing static fields to be reset.
- registerExtensions(MacroExtension) - Static method in class ij.macro.Functions
-
- REINITIALIZATION_FAILURE - Static variable in class ij.measure.Minimizer
-
Status returned: Could not reinitialize the simplex because all attempts to find restarting
parameters resulted in the target function returning NaN.
- remove() - Method in class ij.gui.Line.PointIterator
-
- remove(int) - Method in class ij.gui.Overlay
-
Removes the ROI with the specified index from this Overlay.
- remove(Roi) - Method in class ij.gui.Overlay
-
Removes the specified ROI from this Overlay.
- remove(String) - Method in class ij.gui.Overlay
-
Removes all ROIs that have the specified name.
- REMOVE_NAN - Static variable in class ij.plugin.filter.RankFilters
-
- removeAdjustmentListener(AdjustmentListener) - Method in class ij.gui.ScrollbarWithLabel
-
- removeBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
-
- removeCommandListener(CommandListener) - Static method in class ij.Executer
-
Removes the specified command listener.
- removeEventListener(IJEventListener) - Static method in class ij.IJ
-
- removeImageListener(ImageListener) - Static method in class ij.ImagePlus
-
- removeKeyListener(KeyListener) - Method in class ij.gui.ScrollbarWithLabel
-
- removeLast(int) - Method in class ij.util.FloatArray
-
Deletes the last n element from this FloatArray.
- removeLayoutComponent(Component) - Method in class ij.gui.ImageLayout
-
Not used by this class.
- removeMacroTools() - Static method in class ij.gui.Toolbar
-
- removeRoiListener(RoiListener) - Static method in class ij.gui.Roi
-
- removeSplineFit() - Method in class ij.gui.PolygonRoi
-
- removeWindow(Window) - Static method in class ij.WindowManager
-
Removes the specified window from the Window menu.
- removeWindow(Frame) - Static method in class ij.WindowManager
-
Removes the specified Frame from the Window menu.
- RENAME - Static variable in interface ij.macro.MacroConstants
-
- rename(int, String) - Method in class ij.plugin.frame.RoiManager
-
- rename(String) - Method in class ij.text.TextWindow
-
- renameColumn(String, String) - Method in class ij.measure.ResultsTable
-
Changes the name of a column.
- renameResults(String) - Static method in class ij.IJ
-
Renames a results window.
- renameResults(String, String) - Static method in class ij.IJ
-
Changes the name of a table window from 'oldTitle' to 'newTitle'.
- repaint() - Method in class ij.gui.GenericDialog
-
- repaintImageWindows() - Static method in class ij.WindowManager
-
Repaints all open image windows.
- repaintWindow() - Method in class ij.ImagePlus
-
Calls draw to draw the image and also repaints the
image window to force the information displayed above
the image (dimension, type, size) to be updated.
- replace(int, String, double[], double[]) - Method in class ij.gui.Plot
-
Replaces the specified plot object (curve or set of points).
- REPLACE - Static variable in interface ij.macro.MacroConstants
-
- requireControlKey - Static variable in class ij.Prefs
-
Require control or command key for keybaord shortcuts.
- REQUIRES - Static variable in interface ij.macro.MacroConstants
-
- resampleArray(double[], int) - Static method in class ij.util.Tools
-
Returns an array linearly resampled to a different length.
- reset() - Method in class ij.CompositeImage
-
- RESET - Static variable in interface ij.macro.MacroConstants
-
- reset() - Method in class ij.measure.ResultsTable
-
- reset() - Method in class ij.plugin.frame.RoiManager
-
Clears this RoiManager so that it contains no ROIs.
- reset() - Method in class ij.process.ByteProcessor
-
Reset the image from snapshot.
- reset(ImageProcessor) - Method in class ij.process.ByteProcessor
-
Restore pixels that are within roi but not part of mask.
- reset() - Method in class ij.process.ColorProcessor
-
- reset(ImageProcessor) - Method in class ij.process.ColorProcessor
-
- reset() - Method in class ij.process.FloatProcessor
-
- reset(ImageProcessor) - Method in class ij.process.FloatProcessor
-
- reset() - Method in class ij.process.ImageProcessor
-
Restores the pixel data from the snapshot (undo) buffer.
- reset(ImageProcessor) - Method in class ij.process.ImageProcessor
-
Restores pixels from the snapshot buffer that are
within the rectangular roi but not part of the mask.
- reset() - Method in class ij.process.ShortProcessor
-
- reset(ImageProcessor) - Method in class ij.process.ShortProcessor
-
- reset() - Static method in class ij.Undo
-
- RESET_MIN_MAX - Static variable in interface ij.macro.MacroConstants
-
- RESET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
-
- resetBinaryThreshold() - Method in class ij.process.ImageProcessor
-
Resets the threshold if minThreshold=maxThreshold and lutUpdateMode=NO_LUT_UPDATE.
- resetBoundingRect() - Method in class ij.gui.PolygonRoi
-
- resetClassLoader() - Static method in class ij.IJ
-
- resetClipboard() - Static method in class ij.ImagePlus
-
Clears the internal clipboard.
- resetCounter() - Static method in class ij.plugin.filter.Analyzer
-
Sets the measurement counter to zero.
- resetCounter - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- resetCounters() - Method in class ij.gui.PointRoi
-
- resetDisplayRange() - Method in class ij.CompositeImage
-
- resetDisplayRange() - Method in class ij.ImagePlus
-
- resetDisplayRanges() - Method in class ij.CompositeImage
-
- resetDoubleBuffer() - Method in class ij.gui.ImageCanvas
-
- resetEscape() - Static method in class ij.IJ
-
This method sets the Esc key to the "up" position.
- resetMinAndMax() - Static method in class ij.IJ
-
Resets the minimum and maximum displayed pixel values of the
current image to be the same as the min and max pixel values.
- resetMinAndMax(ImagePlus) - Static method in class ij.IJ
-
Resets the minimum and maximum displayed pixel values of the
specified image to be the same as the min and max pixel values.
- resetMinAndMax() - Method in class ij.process.ByteProcessor
-
Resets this image's LUT.
- resetMinAndMax() - Method in class ij.process.FloatProcessor
-
Recalculates the min and max values used to scale pixel
values to 0-255 for display.
- resetMinAndMax() - Method in class ij.process.ImageProcessor
-
For short and float images, recalculates the min and max
image values needed to correctly display the image.
- resetMinAndMax() - Method in class ij.process.ShortProcessor
-
Recalculates the min and max values used to scale pixel
values to 0-255 for display.
- resetMultiMeasureResults() - Static method in class ij.plugin.frame.RoiManager
-
- resetOutOfRoi(ImageProcessor, int) - Static method in class ij.plugin.filter.GaussianBlur
-
Set the processed pixels above and below the roi rectangle back to their
previous value (i.e., snapshot buffer).
- resetPreferences() - Static method in class ij.Prefs
-
Delete the preferences file when ImageJ quits.
- resetRoi() - Method in class ij.process.ImageProcessor
-
Sets the ROI (Region of Interest) and clipping rectangle to the entire image.
- resetSelection() - Method in class ij.text.TextPanel
-
Clears the selection, if any.
- resetStack() - Method in class ij.ImagePlus
-
- resetThreshold() - Static method in class ij.IJ
-
Disables thresholding on the current image.
- resetThreshold(ImagePlus) - Static method in class ij.IJ
-
Disables thresholding on the specified image.
- resetThreshold() - Method in class ij.process.ImageProcessor
-
Disables thresholding.
- resize() - Method in class ij.ImageJ
-
- resize(int, int) - Method in class ij.process.ByteProcessor
-
Creates a new ByteProcessor containing a scaled copy of this image or selection.
- resize(int, int) - Method in class ij.process.ColorProcessor
-
Creates a new ColorProcessor containing a scaled copy of this image or selection.
- resize(int, int) - Method in class ij.process.FloatProcessor
-
Creates a new FloatProcessor containing a scaled copy of this image or selection.
- resize(int, int) - Method in class ij.process.ImageProcessor
-
Returns a new ImageProcessor containing a scaled copy of this image or ROI.
- resize(int) - Method in class ij.process.ImageProcessor
-
Returns a new ImageProcessor containing a scaled copy
of this image or ROI, with the aspect ratio maintained.
- resize(int, int, boolean) - Method in class ij.process.ImageProcessor
-
Returns a new ImageProcessor containing a scaled copy of this image or ROI.
- resize(int, int) - Method in class ij.process.ShortProcessor
-
Creates a new ShortProcessor containing a scaled copy of this image or selection.
- resize(int, int) - Method in class ij.process.StackProcessor
-
Creates a new stack with dimensions 'newWidth' x 'newHeight'.
- resize(int, int, boolean) - Method in class ij.process.StackProcessor
-
- resizeLinearly(int, int) - Method in class ij.process.ImageProcessor
-
Use linear interpolation to resize images that have a width or height of one.
- Resizer - Class in ij.plugin
-
This plugin implements the Edit/Crop and Image/Adjust/Size commands.
- Resizer() - Constructor for class ij.plugin.Resizer
-
- RESIZING - Static variable in class ij.gui.Roi
-
- reslice(ImagePlus) - Method in class ij.plugin.Slicer
-
- RESOLUTION_UNIT - Static variable in class ij.io.TiffDecoder
-
- RESTORE_PREVIOUS_TOOL - Static variable in interface ij.macro.MacroConstants
-
- RESTORE_SETTINGS - Static variable in interface ij.macro.MacroConstants
-
- restorePlotObjects() - Method in class ij.gui.Plot
-
Restores the plot contents (not including axis formats etc) from the snapshot
previously created by savePlotObjects().
- restorePreviousTool() - Method in class ij.gui.Toolbar
-
- restoreRoi() - Method in class ij.ImagePlus
-
- restoreTools() - Static method in class ij.gui.Toolbar
-
- ResultsSorter - Class in ij.plugin
-
This plugin implements the Results Table's Sort command.
- ResultsSorter() - Constructor for class ij.plugin.ResultsSorter
-
- ResultsTable - Class in ij.measure
-
This is a table for storing measurement results and strings as columns of values.
- ResultsTable() - Constructor for class ij.measure.ResultsTable
-
Constructs an empty ResultsTable with the counter=0, no columns
and the precision set to 3 or the "Decimal places" value in
Analyze/Set Measurements if that value is higher than 3.
- ResultsTable(Integer) - Constructor for class ij.measure.ResultsTable
-
Constructs a ResultsTable with 'nRows' rows.
- ResultsTableMacros - Class in ij.measure
-
This class implements the Apply Macro command in tables.
- ResultsTableMacros(ResultsTable) - Constructor for class ij.measure.ResultsTableMacros
-
- RETURN - Static variable in interface ij.macro.MacroConstants
-
- reverseNextPreviousOrder - Static variable in class ij.Prefs
-
Reverse channel-slice-frame priority used by Next Slice and Previous Slice commands.
- revert() - Method in class ij.ImagePlus
-
Implements the File/Revert command.
- revert() - Method in class ij.plugin.frame.Editor
-
- revertSystem() - Static method in class ij.io.LogStream
-
Use this method to revert both System.out and System.err
to their original output streams.
- revertSystemErr() - Static method in class ij.io.LogStream
-
Use this method to revertSystem.err
to the original output stream.
- revertSystemOut() - Static method in class ij.io.LogStream
-
Use this method to revertSystem.out
to the original output stream.
- revertToSaved(ImagePlus) - Method in class ij.io.FileOpener
-
Restores the original version of the specified image.
- rgb - Variable in class ij.gui.HistogramWindow
-
- RGB - Static variable in class ij.gui.NewImage
-
- RGB - Static variable in class ij.io.FileInfo
-
24-bit interleaved RGB.
- rgb - Variable in class ij.process.FHT
-
Used by the FFT class.
- RGB48 - Static variable in class ij.io.FileInfo
-
48-bit interleaved RGB.
- RGB48_PLANAR - Static variable in class ij.io.FileInfo
-
48-bit planar RGB.
- RGB_DILATE - Static variable in class ij.process.ColorProcessor
-
- RGB_ERODE - Static variable in class ij.process.ColorProcessor
-
- RGB_FIND_EDGES - Static variable in class ij.process.ColorProcessor
-
- RGB_MAX - Static variable in class ij.process.ColorProcessor
-
- RGB_MEDIAN - Static variable in class ij.process.ColorProcessor
-
- RGB_MIN - Static variable in class ij.process.ColorProcessor
-
- RGB_NOISE - Static variable in class ij.process.ColorProcessor
-
- RGB_PLANAR - Static variable in class ij.io.FileInfo
-
24-bit planer RGB.
- RGB_RESIZE - Static variable in class ij.process.ColorProcessor
-
- RGB_ROTATE - Static variable in class ij.process.ColorProcessor
-
- RGB_SCALE - Static variable in class ij.process.ColorProcessor
-
- RGB_THRESHOLD - Static variable in class ij.process.ColorProcessor
-
- RGB_TRANSLATE - Static variable in class ij.process.ColorProcessor
-
- RGBStackConverter - Class in ij.plugin
-
Converts a 2 or 3 slice stack, or a hyperstack, to RGB.
- RGBStackConverter() - Constructor for class ij.plugin.RGBStackConverter
-
- RGBStackMerge - Class in ij.plugin
-
This plugin implements the Image/Color/Merge Channels command.
- RGBStackMerge() - Constructor for class ij.plugin.RGBStackMerge
-
- RGBStackSplitter - Class in ij.plugin.filter
-
Deprecated; replaced by ij.plugin.ChannelSplitter.
- RGBStackSplitter() - Constructor for class ij.plugin.filter.RGBStackSplitter
-
- RGBtoHSB(int, int, int) - Method in class ij.process.ColorSpaceConverter
-
- RGBtoHSB(int[]) - Method in class ij.process.ColorSpaceConverter
-
- RGBtoLab() - Static method in class ij.plugin.frame.ColorThresholder
-
Converts the current image from RGB to CIE L*a*b* and stores the results
in the same RGB image R=L*, G=a*, B=b*.
- RGBtoLAB(int) - Method in class ij.process.ColorSpaceConverter
-
- RGBtoLAB(int[]) - Method in class ij.process.ColorSpaceConverter
-
- RGBToLab(ImagePlus) - Method in class ij.process.ColorSpaceConverter
-
Converts an RGB image into a Lab stack.
- RGBtoXYZ(int, int, int) - Method in class ij.process.ColorSpaceConverter
-
Convert RGB to XYZ
- RGBtoXYZ(int[]) - Method in class ij.process.ColorSpaceConverter
-
Convert RGB to XYZ
- RGBtoYUV() - Static method in class ij.plugin.frame.ColorThresholder
-
Converts the current image from RGB to YUV and stores
the results in the same RGB image R=Y, G=U, B=V.
- rh - Variable in class ij.process.ImageStatistics
-
- RIGHT - Static variable in class ij.gui.Plot
-
Text justification.
- RIGHT - Static variable in class ij.gui.TextRoi
-
- RIGHT - Static variable in class ij.io.RoiDecoder
-
- RIGHT_JUSTIFY - Static variable in class ij.process.ImageProcessor
-
Right justify text.
- RIGHT_MARGIN - Static variable in class ij.gui.Plot
-
- rLUT1 - Variable in class ij.process.ImageProcessor
-
- rLUT2 - Variable in class ij.process.ImageProcessor
-
- rnd - Static variable in class ij.process.ImageProcessor
-
- RODBARD - Static variable in class ij.measure.Calibration
-
- RODBARD - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- RODBARD2 - Static variable in class ij.measure.Calibration
-
- RODBARD2 - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- Roi - Class in ij.gui
-
A rectangular region of interest and superclass for the other ROI classes.
- Roi(int, int, int, int) - Constructor for class ij.gui.Roi
-
Creates a rectangular ROI.
- Roi(double, double, double, double) - Constructor for class ij.gui.Roi
-
Creates a rectangular ROI using double arguments.
- Roi(int, int, int, int, int) - Constructor for class ij.gui.Roi
-
Creates a new rounded rectangular ROI.
- Roi(double, double, double, double, int) - Constructor for class ij.gui.Roi
-
Creates a rounded rectangular ROI using double arguments.
- Roi(Rectangle) - Constructor for class ij.gui.Roi
-
Creates a new rectangular Roi.
- Roi(int, int, ImagePlus) - Constructor for class ij.gui.Roi
-
Starts the process of creating a user-defined rectangular Roi,
where sx and sy are the starting screen coordinates.
- Roi(int, int, ImagePlus, int) - Constructor for class ij.gui.Roi
-
Starts the process of creating a user-defined rectangular Roi,
where sx and sy are the starting screen coordinates.
- Roi(int, int, int, int, ImagePlus) - Constructor for class ij.gui.Roi
-
Deprecated.
- Roi(double, double, double, double) - Static method in class ij.IJ
-
Creates an Roi.
- roi - Variable in class ij.ImagePlus
-
- roi - Variable in class ij.io.FileInfo
-
- ROI - Static variable in class ij.io.Opener
-
- ROI - Static variable in interface ij.macro.MacroConstants
-
- ROI - Static variable in class ij.Undo
-
- ROI_HEIGHT - Static variable in class ij.measure.ResultsTable
-
- ROI_MANAGER - Static variable in interface ij.macro.MacroConstants
-
- ROI_MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
- ROI_PROPS_LENGTH - Static variable in class ij.io.RoiDecoder
-
- ROI_PROPS_OFFSET - Static variable in class ij.io.RoiDecoder
-
- ROI_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
-
Set this flag if the filter requires an ROI.
- ROI_WIDTH - Static variable in class ij.measure.ResultsTable
-
- ROI_X - Static variable in class ij.measure.ResultsTable
-
- ROI_Y - Static variable in class ij.measure.ResultsTable
-
- ROIColor - Static variable in class ij.gui.Roi
-
- ROICOLOR - Static variable in class ij.Prefs
-
- RoiDecoder - Class in ij.io
-
Decodes an ImageJ, NIH Image or Scion Image ROI file.
- RoiDecoder(String) - Constructor for class ij.io.RoiDecoder
-
Constructs an RoiDecoder using a file path.
- RoiDecoder(byte[], String) - Constructor for class ij.io.RoiDecoder
-
Constructs an RoiDecoder using a byte array.
- RoiEncoder - Class in ij.io
-
Saves an ROI to a file or stream.
- RoiEncoder(String) - Constructor for class ij.io.RoiEncoder
-
Creates an RoiEncoder using the specified path.
- RoiEncoder(OutputStream) - Constructor for class ij.io.RoiEncoder
-
Creates an RoiEncoder using the specified OutputStream.
- RoiEnlarger - Class in ij.plugin
-
This plugin, which enlarges or shrinks selections, implements the Edit/Selection/Enlarge command.
- RoiEnlarger() - Constructor for class ij.plugin.RoiEnlarger
-
- roiHeight - Variable in class ij.process.ImageProcessor
-
- roiHeight - Variable in class ij.process.ImageStatistics
-
- RoiInterpolator - Class in ij.plugin
-
This class interpolates between ROIs in the ROI Manager.
- RoiInterpolator() - Constructor for class ij.plugin.RoiInterpolator
-
- RoiListener - Interface in ij.gui
-
Plugins that implement this interface are notified when
an ROI is created, modified or deleted.
- RoiManager - Class in ij.plugin.frame
-
This plugin implements the Analyze/Tools/ROI Manager command.
- RoiManager() - Constructor for class ij.plugin.frame.RoiManager
-
Opens the "ROI Manager" window, or activates it if it is already open.
- RoiManager(boolean) - Constructor for class ij.plugin.frame.RoiManager
-
Constructs an ROIManager without displaying it.
- roiManagerSelect(Roi, boolean) - Method in class ij.gui.ImageCanvas
-
- roiModified(ImagePlus, int) - Method in class ij.gui.HistogramWindow
-
- roiModified(ImagePlus, int) - Method in class ij.gui.PlotWindow
-
For live plots, update the plot if the ROI of the source image changes
- roiModified(ImagePlus, int) - Method in interface ij.gui.RoiListener
-
- roiModified(ImagePlus, int) - Method in class ij.plugin.EventListener
-
- RoiProperties - Class in ij.gui
-
Displays a dialog that allows the user to specify ROI properties such as color and line width.
- RoiProperties(String, Roi) - Constructor for class ij.gui.RoiProperties
-
Constructs a ColorChooser using the specified title and initial color.
- RoiReader - Class in ij.plugin
-
Opens ImageJ, NIH Image and Scion Image for windows ROI outlines.
- RoiReader() - Constructor for class ij.plugin.RoiReader
-
- RoiRotationTool - Class in ij.plugin.tool
-
- RoiRotationTool() - Constructor for class ij.plugin.tool.RoiRotationTool
-
- RoiRotator - Class in ij.plugin
-
This plugin implements the Edit/Selection/Rotate command.
- RoiRotator() - Constructor for class ij.plugin.RoiRotator
-
- RoiScaler - Class in ij.plugin
-
This plugin implements the Edit/Selection/Scale command.
- RoiScaler() - Constructor for class ij.plugin.RoiScaler
-
- roiWidth - Variable in class ij.process.ImageProcessor
-
- roiWidth - Variable in class ij.process.ImageStatistics
-
- RoiWriter - Class in ij.plugin.filter
-
Saves the current ROI outline to a file.
- RoiWriter() - Constructor for class ij.plugin.filter.RoiWriter
-
- roiX - Variable in class ij.process.ImageProcessor
-
- roiX - Variable in class ij.process.ImageStatistics
-
- roiY - Variable in class ij.process.ImageProcessor
-
- roiY - Variable in class ij.process.ImageStatistics
-
- rollingBallBackground(ImageProcessor, double, boolean, boolean, boolean, boolean, boolean) - Method in class ij.plugin.filter.BackgroundSubtracter
-
Create or subtract a background, works for all image types.
- rollingBallBrightnessBackground(ColorProcessor, double, boolean, boolean, boolean, boolean, boolean) - Method in class ij.plugin.filter.BackgroundSubtracter
-
Create or subtract a background, based on the brightness of an RGB image (keeping
the hue of each pixel unchanged)
- rotate(double) - Method in class ij.gui.ImageRoi
-
- rotate(Roi, double) - Static method in class ij.plugin.RoiRotator
-
- rotate(Roi, double, double, double) - Static method in class ij.plugin.RoiRotator
-
- rotate(double) - Method in class ij.process.ByteProcessor
-
Rotates the image or ROI 'angle' degrees clockwise.
- rotate(double) - Method in class ij.process.ColorProcessor
-
Rotates the image or ROI 'angle' degrees clockwise.
- rotate(double) - Method in class ij.process.FloatProcessor
-
Rotates the image or ROI 'angle' degrees clockwise.
- rotate(double) - Method in class ij.process.ImageProcessor
-
Rotates the image or selection 'angle' degrees clockwise.
- rotate(double) - Method in class ij.process.ShortProcessor
-
Rotates the image or ROI 'angle' degrees clockwise.
- ROTATED_RECT - Static variable in class ij.io.RoiDecoder
-
- ROTATED_RECT_ROI - Static variable in class ij.gui.Toolbar
-
- RotatedRectRoi - Class in ij.gui
-
This class implements the rotated rectangle selection tool.
- RotatedRectRoi(double, double, double, double, double) - Constructor for class ij.gui.RotatedRectRoi
-
- RotatedRectRoi(int, int, ImagePlus) - Constructor for class ij.gui.RotatedRectRoi
-
- rotateLeft() - Method in class ij.process.ImageProcessor
-
Rotates the entire image 90 degrees counter-clockwise.
- rotateLeft() - Method in class ij.process.StackProcessor
-
- rotateLine(ImagePlus, int) - Method in class ij.plugin.Straightener
-
- rotateRight() - Method in class ij.process.ImageProcessor
-
Rotates the entire image 90 degrees clockwise.
- rotateRight() - Method in class ij.process.StackProcessor
-
- rotateYZ - Static variable in class ij.Prefs
-
Rotate YZ orthogonal views 90 degrees
- Rotator - Class in ij.plugin.filter
-
This plugin implements the Image/Rotate/Arbitrarily command.
- Rotator() - Constructor for class ij.plugin.filter.Rotator
-
- ROUND - Static variable in interface ij.macro.MacroConstants
-
- ROUNDED_RECT_ARC_SIZE - Static variable in class ij.io.RoiDecoder
-
- ROUNDED_RECT_ROI - Static variable in class ij.gui.Toolbar
-
- ROUNDNESS - Static variable in class ij.measure.ResultsTable
-
- rowIndex(int) - Method in class ij.text.TextPanel
-
Converts a y coordinate in pixels into a row index.
- ROWS_PER_STRIP - Static variable in class ij.io.TiffDecoder
-
- rowsPerStrip - Variable in class ij.io.FileInfo
-
- rt - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- run() - Method in class ij.Executer
-
- run() - Method in class ij.gui.HistogramWindow
-
- run() - Method in class ij.gui.PlotWindow
-
- run() - Method in class ij.gui.StackWindow
-
- run(String) - Static method in class ij.IJ
-
Runs an ImageJ command.
- run(String, String) - Static method in class ij.IJ
-
Runs an ImageJ command, with options that are passed to the
GenericDialog and OpenDialog classes.
- run(Interpreter, String, String) - Static method in class ij.IJ
-
The macro interpreter uses this method to run commands.
- run(ImagePlus, String, String) - Static method in class ij.IJ
-
Runs an ImageJ command using the specified image and options.
- run() - Method in class ij.ImageJ
-
Quit using a separate thread, hopefully avoiding thread deadlocks.
- run(String) - Method in class ij.macro.Interpreter
-
Interprets the specified string.
- run(String, String) - Method in class ij.macro.Interpreter
-
Runs the specified macro, passing it a string
argument and returning a string value.
- run(Program) - Method in class ij.macro.Interpreter
-
Interprets the specified tokenized macro file starting at location 0.
- run(int) - Method in class ij.macro.Interpreter
-
Runs an existing macro starting at the specified program counter location.
- RUN - Static variable in interface ij.macro.MacroConstants
-
- run(Program, int, String) - Method in class ij.macro.MacroRunner
-
Runs a tokenized macro on the current thread.
- run() - Method in class ij.macro.MacroRunner
-
- run(boolean) - Method in class ij.macro.StartupRunner
-
Runs the RunAtStartup and AutoRun macros, on the current thread
if 'batchMode' true, otherwise on a separate thread.
- run() - Method in class ij.macro.StartupRunner
-
- run() - Method in class ij.measure.ResultsTableMacros
-
- run(String) - Method in class ij.plugin.AboutBox
-
- run(String) - Method in class ij.plugin.Animator
-
Set 'arg' to "set" to display a dialog that allows the user to specify the
animation speed.
- run(String) - Method in class ij.plugin.AppearanceOptions
-
- run(String) - Method in class ij.plugin.ArrowToolOptions
-
- run(String) - Method in class ij.plugin.AVI_Reader
-
The plugin is invoked by ImageJ using this method.
- run(String) - Method in class ij.plugin.BatchConverter
-
- run(String) - Method in class ij.plugin.BatchMeasure
-
- run(String) - Method in class ij.plugin.BatchProcessor
-
- run() - Method in class ij.plugin.BatchProcessor
-
- run(String) - Method in class ij.plugin.Binner
-
- run(String) - Method in class ij.plugin.BMP_Reader
-
- run(String) - Method in class ij.plugin.BMP_Writer
-
- run(String) - Method in class ij.plugin.BrowserLauncher
-
Opens the specified URL (default is the ImageJ home page).
- run(String) - Method in class ij.plugin.CalibrationBar
-
- run(String) - Method in class ij.plugin.CanvasResizer
-
- run(String) - Method in class ij.plugin.ChannelArranger
-
- run(ImagePlus, int[]) - Static method in class ij.plugin.ChannelArranger
-
Changes the order of the channels in a hyperstack.
- run(String) - Method in class ij.plugin.ChannelSplitter
-
- run(String) - Method in class ij.plugin.CircularRoiMaker
-
- run(String) - Method in class ij.plugin.ClassChecker
-
- run(String) - Method in class ij.plugin.Clipboard
-
- run(String) - Method in class ij.plugin.Colors
-
- run(String) - Method in class ij.plugin.CommandFinder
-
Displays the Command Finder dialog.
- run(String) - Method in class ij.plugin.CommandLister
-
- run(String) - Method in class ij.plugin.Commands
-
- run(String) - Method in class ij.plugin.Compiler
-
- run(String) - Method in class ij.plugin.CompositeConverter
-
- run(String) - Method in class ij.plugin.Concatenator
-
Optional string argument sets the name dialog boxes if called from another plugin.
- run() - Method in class ij.plugin.Concatenator
-
Displays a dialog requiring user to choose images and
returns ImagePlus of concatenated images.
- run(ImagePlus, ImagePlus) - Static method in class ij.plugin.Concatenator
-
Concatenates two images, stacks or hyperstacks.
- run(ImagePlus, ImagePlus, ImagePlus) - Static method in class ij.plugin.Concatenator
-
Concatenates three images, stacks or hyperstacks.
- run(ImagePlus, ImagePlus, ImagePlus, ImagePlus) - Static method in class ij.plugin.Concatenator
-
Concatenates four images, stacks or hyperstacks.
- run(ImagePlus, ImagePlus, ImagePlus, ImagePlus, ImagePlus) - Static method in class ij.plugin.Concatenator
-
Concatenates five images, stacks or hyperstacks.
- run(ImagePlus[]) - Static method in class ij.plugin.Concatenator
-
Concatenates two or more images, stacks or hyperstacks.
- run(String) - Method in class ij.plugin.ContrastEnhancer
-
- run(String) - Method in class ij.plugin.ControlPanel
-
Creates a panel with the hierarchical tree structure of ImageJ's commands.
- run(String) - Method in class ij.plugin.Converter
-
- run(String) - Method in class ij.plugin.Coordinates
-
- run(String) - Method in class ij.plugin.DICOM
-
- run(String) - Method in class ij.plugin.Distribution
-
- run(String) - Method in class ij.plugin.DragAndDrop
-
- run() - Method in class ij.plugin.DragAndDrop
-
- run(String) - Method in class ij.plugin.Duplicator
-
- run(ImagePlus) - Method in class ij.plugin.Duplicator
-
Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.
- run(ImagePlus, int, int) - Method in class ij.plugin.Duplicator
-
Returns a new stack containing a subrange of the specified stack.
- run(ImagePlus, int, int, int, int, int, int) - Method in class ij.plugin.Duplicator
-
Returns a new hyperstack containing a possibly reduced version of the input image.
- run(String) - Method in class ij.plugin.EventListener
-
- run(String) - Method in class ij.plugin.FFT
-
- run(String) - Method in class ij.plugin.FFTMath
-
- run(String) - Method in class ij.plugin.FileInfoVirtualStack
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Analyzer
-
- run(ImageProcessor) - Method in class ij.plugin.filter.AVI_Writer
-
Asks for the compression type and filename; then saves as AVI file
- run(ImageProcessor) - Method in class ij.plugin.filter.BackgroundSubtracter
-
Background for any image type
- run(ImageProcessor) - Method in class ij.plugin.filter.Benchmark
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Binary
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Calibrator
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Convolver
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Duplicater
-
Deprecated.
- run(ImageProcessor) - Method in class ij.plugin.filter.EDM
-
Called by the PlugInFilterRunner to process the image or one frame of a stack
- run(ImageProcessor) - Method in class ij.plugin.filter.FFTCustomFilter
-
- run(ImageProcessor) - Method in class ij.plugin.filter.FFTFilter
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Filler
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Filters
-
- run(ImageProcessor) - Method in class ij.plugin.filter.FractalBoxCounter
-
- run(ImageProcessor) - Method in class ij.plugin.filter.GaussianBlur
-
This method is invoked for each slice during execution
- run(ImageProcessor) - Method in class ij.plugin.filter.ImageMath
-
- run(ImageProcessor) - Method in class ij.plugin.filter.ImageProperties
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Info
-
Deprecated.
- run(ImageProcessor) - Method in class ij.plugin.filter.LineGraphAnalyzer
-
- run(ImageProcessor) - Method in class ij.plugin.filter.LutApplier
-
- run(ImageProcessor) - Method in class ij.plugin.filter.LutViewer
-
- run(ImageProcessor) - Method in class ij.plugin.filter.MaximumFinder
-
The plugin is inferred from ImageJ by this method
- run(ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer
-
- run(ImageProcessor) - Method in interface ij.plugin.filter.PlugInFilter
-
Filters use this method to process the image.
- run() - Method in class ij.plugin.filter.PlugInFilterRunner
-
The dispatcher for the background threads
- run(ImageProcessor) - Method in class ij.plugin.filter.Printer
-
- run(ImageProcessor) - Method in class ij.plugin.filter.RankFilters
-
- run(ImageProcessor) - Method in class ij.plugin.filter.RGBStackSplitter
-
- run(ImageProcessor) - Method in class ij.plugin.filter.RoiWriter
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Rotator
-
- run(ImageProcessor) - Method in class ij.plugin.filter.SaltAndPepper
-
- run(ImageProcessor) - Method in class ij.plugin.filter.ScaleDialog
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Shadows
-
- run(ImageProcessor) - Method in class ij.plugin.filter.StackLabeler
-
- run(ImageProcessor) - Method in class ij.plugin.filter.ThresholdToSelection
-
- run(ImagePlus) - Static method in class ij.plugin.filter.ThresholdToSelection
-
Returns a selection created from the thresholded pixels in the
specified image, or null if there are no thresholded pixels.
- run(ImageProcessor) - Method in class ij.plugin.filter.Transformer
-
- run(ImageProcessor) - Method in class ij.plugin.filter.Translator
-
- run(ImageProcessor) - Method in class ij.plugin.filter.UnsharpMask
-
This method is invoked for each slice or color channel.
- run(ImageProcessor) - Method in class ij.plugin.filter.Writer
-
Deprecated.
- run(ImageProcessor) - Method in class ij.plugin.filter.XYWriter
-
- run(String) - Method in class ij.plugin.Filters3D
-
- run(String) - Method in class ij.plugin.FITS_Reader
-
- run(String) - Method in class ij.plugin.FITS_Writer
-
- run(String) - Method in class ij.plugin.FolderOpener
-
- run() - Method in class ij.plugin.frame.ColorThresholder
-
- run(String) - Method in class ij.plugin.frame.ContrastAdjuster
-
- run() - Method in class ij.plugin.frame.ContrastAdjuster
-
- run() - Method in class ij.plugin.frame.Editor
-
Downloads BeanShell or Jython interpreter using a separate thread.
- run() - Method in class ij.plugin.frame.LineWidthAdjuster
-
- run(String) - Method in class ij.plugin.frame.PlugInDialog
-
- run(String) - Method in class ij.plugin.frame.PlugInFrame
-
- run() - Method in class ij.plugin.frame.ThresholdAdjuster
-
- run(String) - Method in class ij.plugin.GaussianBlur3D
-
- run(String) - Method in class ij.plugin.GelAnalyzer
-
- run(String) - Method in class ij.plugin.GIF_Reader
-
- run(String) - Method in class ij.plugin.GifWriter
-
- run(String) - Method in class ij.plugin.Grid
-
- run(String) - Method in class ij.plugin.GroupedZProjector
-
- run(String) - Method in class ij.plugin.Histogram
-
- run(String) - Method in class ij.plugin.Hotkeys
-
- run(String) - Method in class ij.plugin.HyperStackConverter
-
- run(String) - Method in class ij.plugin.HyperStackMaker
-
- run(String) - Method in class ij.plugin.HyperStackReducer
-
- run(String) - Method in class ij.plugin.ImageCalculator
-
- run(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
-
- run(String) - Method in class ij.plugin.ImageInfo
-
- run(String) - Method in class ij.plugin.ImageJ_Updater
-
- run(ImagePlus[]) - Static method in class ij.plugin.ImagesToStack
-
Converts the images in 'images' to a stack, using the
default settings ("copy center" and "titles as labels").
- run(String) - Method in class ij.plugin.ImagesToStack
-
- run(String) - Method in class ij.plugin.JavaProperties
-
- run(String) - Method in class ij.plugin.JavaScriptEvaluator
-
- run(String, String) - Method in class ij.plugin.JavaScriptEvaluator
-
- run() - Method in class ij.plugin.JavaScriptEvaluator
-
- run(String) - Method in class ij.plugin.JpegWriter
-
- run(String) - Method in class ij.plugin.ListVirtualStack
-
- run(String) - Method in class ij.plugin.LUT_Editor
-
- run(String) - Method in class ij.plugin.LutLoader
-
If 'arg'="", displays a file open dialog and opens the specified
LUT.
- run(String) - Method in class ij.plugin.Macro_Runner
-
Opens and runs the specified macro file (.txt or .ijm) or script file (.js, .bsh or .py)
on the current thread.
- run(String) - Method in class ij.plugin.MacroInstaller
-
- run(String) - Method in class ij.plugin.MeasurementsWriter
-
- run(String) - Method in class ij.plugin.Memory
-
- run(String) - Method in class ij.plugin.MontageMaker
-
- run(String) - Method in class ij.plugin.NewPlugin
-
- run(String) - Method in class ij.plugin.NextImageOpener
-
- run(String) - Method in class ij.plugin.Options
-
- run(String) - Method in class ij.plugin.Orthogonal_Views
-
- run() - Method in class ij.plugin.Orthogonal_Views
-
- run(String) - Method in class ij.plugin.OverlayCommands
-
- run(String) - Method in class ij.plugin.OverlayLabels
-
- run(String) - Method in class ij.plugin.PGM_Reader
-
- run(String) - Method in interface ij.plugin.PlugIn
-
This method is called when the plugin is loaded.
- run(String) - Method in class ij.plugin.PluginInstaller
-
- run(String) - Method in class ij.plugin.PlugInInterpreter
-
Run script on separate thread.
- run(String, String) - Method in class ij.plugin.PlugInInterpreter
-
Run script on current thread.
- run(String) - Method in class ij.plugin.PNG_Writer
-
- run(String) - Method in class ij.plugin.PNM_Writer
-
- run(String) - Method in class ij.plugin.PointToolOptions
-
- run(String) - Method in class ij.plugin.Profiler
-
- run(String) - Method in class ij.plugin.Projector
-
- run(String) - Method in class ij.plugin.ProxySettings
-
- run(String) - Method in class ij.plugin.Raw
-
- run(String) - Method in class ij.plugin.RectToolOptions
-
- run(String) - Method in class ij.plugin.Resizer
-
- run(String) - Method in class ij.plugin.ResultsSorter
-
- run(String) - Method in class ij.plugin.RGBStackConverter
-
- run(String) - Method in class ij.plugin.RGBStackMerge
-
- run(String) - Method in class ij.plugin.RoiEnlarger
-
- run(String) - Method in class ij.plugin.RoiInterpolator
-
- run(String) - Method in class ij.plugin.RoiReader
-
- run(String) - Method in class ij.plugin.RoiRotator
-
- run(String) - Method in class ij.plugin.RoiScaler
-
- run(String) - Method in class ij.plugin.ScaleBar
-
- run(String) - Method in class ij.plugin.Scaler
-
- run(String) - Method in class ij.plugin.ScreenGrabber
-
- run(String) - Method in class ij.plugin.Selection
-
- run(String) - Method in class ij.plugin.SimpleCommands
-
- run(String) - Method in class ij.plugin.Slicer
-
- run(String) - Method in class ij.plugin.SpecifyROI
-
- run(String) - Method in class ij.plugin.Stack_Statistics
-
- run(String) - Method in class ij.plugin.StackCombiner
-
- run(String) - Method in class ij.plugin.StackEditor
-
- run(String) - Method in class ij.plugin.StackInserter
-
- run(String) - Method in class ij.plugin.StackMaker
-
- run(String) - Method in class ij.plugin.StackPlotter
-
- run(String) - Method in class ij.plugin.StackReducer
-
- run(String) - Method in class ij.plugin.StackReverser
-
- run(String) - Method in class ij.plugin.StackWriter
-
- run(String) - Method in class ij.plugin.Startup
-
- run(String) - Method in class ij.plugin.Straightener
-
- run(String) - Method in class ij.plugin.SubHyperstackMaker
-
- run(String) - Method in class ij.plugin.SubstackMaker
-
- run(String) - Method in class ij.plugin.SurfacePlotter
-
- run(String) - Method in class ij.plugin.Text
-
- run(String) - Method in class ij.plugin.TextFileReader
-
- run(String) - Method in class ij.plugin.TextReader
-
- run(String) - Method in class ij.plugin.TextWriter
-
- run(String) - Method in class ij.plugin.ThreadLister
-
- run(String) - Method in class ij.plugin.Thresholder
-
- run(String) - Method in class ij.plugin.tool.BrushTool
-
- run() - Method in class ij.plugin.tool.BrushTool
-
- run() - Method in class ij.plugin.tool.OverlayBrushTool
-
- run(String) - Method in class ij.plugin.tool.PlugInTool
-
- run(String) - Method in class ij.plugin.URLOpener
-
If 'urlOrName' is a URL, opens the image at that URL.
- run(String) - Method in class ij.plugin.WandToolOptions
-
- run(String) - Method in class ij.plugin.WindowOrganizer
-
- run(String) - Method in class ij.plugin.XY_Reader
-
- run(String) - Method in class ij.plugin.XYCoordinates
-
- run(String) - Method in class ij.plugin.ZAxisProfiler
-
- run(String) - Method in class ij.plugin.Zoom
-
- run(ImagePlus, String) - Static method in class ij.plugin.ZProjector
-
Performs projection on the entire stack using the specified method and returns
the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
- run(ImagePlus, String, int, int) - Static method in class ij.plugin.ZProjector
-
Performs projection using the specified method and stack range, and returns
the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
- run(String) - Method in class ij.plugin.ZProjector
-
- run(ImagePlus, Roi[]) - Method in class ij.process.BinaryInterpolator
-
- run(ImageStack) - Method in class ij.process.BinaryInterpolator
-
- run() - Method in class ij.RecentOpener
-
Open the file and move the path to top of the submenu.
- run() - Method in class ij.text.TextPanel
-
For better performance, open double-clicked files on
separate thread instead of on event dispatch thread.
- run(String) - Method in class MacAdapter
-
- run() - Method in class MacAdapter
-
- RUN_MACRO - Static variable in interface ij.macro.MacroConstants
-
- RUN_TO_CARET - Static variable in interface ij.macro.Debugger
-
- RUN_TO_COMPLETION - Static variable in interface ij.macro.Debugger
-
- runBatchMacro(String, ImagePlus) - Method in class ij.macro.Interpreter
-
Runs Process/Batch/ macros.
- runBeanShell(String, String) - Static method in class ij.plugin.Macro_Runner
-
Runs a BeanShell script on the current thread, passing a string argument,
which the script can retrieve using the getArgument() function.
- runCommand(String) - Method in class ij.plugin.CommandFinder
-
- runCommand(String) - Method in class ij.plugin.frame.RoiManager
-
Executes the ROI Manager "Add", "Add & Draw", "Update", "Delete", "Measure", "Draw",
"Show All", "Show None", "Fill", "Deselect", "Select All", "Combine", "AND", "XOR", "Split",
"Sort" or "Multi Measure" command.
- runCommand(ImagePlus, String) - Method in class ij.plugin.frame.RoiManager
-
Using the specified image, runs the ROI Manager "Add", "Add & Draw", "Update",
"Delete", "Measure", "Draw", "Show All", "Show None", "Fill", "Deselect", "Select All",
"Combine", "AND", "XOR", "Split", "Sort" or "Multi Measure" command.
- runCommand(String, String) - Method in class ij.plugin.frame.RoiManager
-
Executes the ROI Manager "Open", "Save" or "Rename" command.
- runCommand(String, String, double) - Method in class ij.plugin.frame.RoiManager
-
Adds the current selection to the ROI Manager, using the
specified color (a 6 digit hex string) and line width.
- runFilterPlugIn(Object, String, String) - Method in class ij.ImageJ
-
- runFromLabel(String) - Method in class ij.macro.FunctionFinder
-
- runJavaScript(String, String) - Method in class ij.plugin.Macro_Runner
-
Runs a JavaScript script on the current thread, passing a string argument,
which the script can retrieve using the getArgument() function.
- runMacro(String) - Static method in class ij.IJ
-
Runs the macro contained in the string macro.
- runMacro(String, String) - Static method in class ij.IJ
-
Runs the macro contained in the string macro.
- runMacro(Program, int, String) - Method in class ij.macro.Interpreter
-
Interprets the specified tokenized macro starting at the specified location.
- runMacro(String, String) - Method in class ij.plugin.Macro_Runner
-
Runs the specified macro on the current thread.
- runMacro(String) - Method in class ij.plugin.MacroInstaller
-
- runMacro(String, Editor) - Method in class ij.plugin.MacroInstaller
-
- runMacroCommand(String) - Static method in class ij.plugin.MacroInstaller
-
Runs a command in the Plugins/Macros submenu on the current thread.
- runMacroFile(String, String) - Static method in class ij.IJ
-
Runs the specified macro or script file in the current thread.
- runMacroFile(String) - Static method in class ij.IJ
-
Runs the specified macro file.
- runMacroFile(String, String) - Method in class ij.plugin.Macro_Runner
-
Opens and runs the specified macro or script on the current
thread.
- runMacroFromIJJar(String, String) - Method in class ij.plugin.Macro_Runner
-
- runMacroFromJar(String, String) - Static method in class ij.plugin.Macro_Runner
-
Runs the specified macro from a JAR file in the plugins folder,
passing it the specified argument.
- runMacroShortcut(String) - Static method in class ij.plugin.MacroInstaller
-
- runMacroTool(String) - Method in class ij.plugin.MacroInstaller
-
- runMacroTool(String) - Method in class ij.plugin.tool.MacroToolRunner
-
- runMacroTool(String) - Method in class ij.plugin.tool.PlugInTool
-
These methods are overridden by MacroToolRunner.
- runMenuTool(String, String) - Method in class ij.plugin.MacroInstaller
-
- runMenuTool(String, String) - Method in class ij.plugin.tool.MacroToolRunner
-
- runMenuTool(String, String) - Method in class ij.plugin.tool.PlugInTool
-
- running - Variable in class ij.gui.ImageWindow
-
This variable is set false if the user presses the escape key or closes the window.
- running2 - Variable in class ij.gui.ImageWindow
-
This variable is set false if the user clicks in this
window, presses the escape key, or closes the window.
- runPlugIn(ImagePlus, String, String) - Static method in class ij.IJ
-
Runs the specified plugin using the specified image.
- runPlugIn(String, String) - Static method in class ij.IJ
-
Runs the specified plugin and returns a reference to it.
- runPlugIn(String, String, String) - Static method in class ij.IJ
-
Runs the specified plugin and returns a reference to it.
- runPython(String, String) - Static method in class ij.plugin.Macro_Runner
-
Runs a Python script on the current thread, passing a string argument,
which the script can retrieve using the getArgument() function.
- runShortcut(Program, int, String) - Method in class ij.macro.MacroRunner
-
Runs tokenized macro on current thread if pgm.queueCommands is true.
- runSocketListener - Static variable in class ij.Prefs
-
Run the SocketListener.
- runUserPlugIn(String, String, String, boolean) - Method in class ij.ImageJ
-
- rw - Variable in class ij.process.ImageStatistics
-
- rx - Variable in class ij.process.ImageStatistics
-
- ry - Variable in class ij.process.ImageStatistics
-
- s2ints(String) - Method in class ij.plugin.ControlPanel
-
Breaks the specified string into an array
of ints.
- s2ints(String) - Method in class ij.plugin.filter.FractalBoxCounter
-
Breaks the specified string into an array
of ints.
- SaltAndPepper - Class in ij.plugin.filter
-
Implements ImageJ's Process/Noise/Salt and Pepper command.
- SaltAndPepper() - Constructor for class ij.plugin.filter.SaltAndPepper
-
- SAMPLE_FORMAT - Static variable in class ij.io.TiffDecoder
-
- sampleModel - Variable in class ij.process.ImageProcessor
-
- SAMPLES_PER_PIXEL - Static variable in class ij.io.TiffDecoder
-
- samplesPerPixel - Variable in class ij.io.FileInfo
-
- SansSerif12 - Static variable in class ij.ImageJ
-
SansSerif, 12-point, plain font.
- save - Variable in class ij.gui.HistogramWindow
-
- save(String) - Static method in class ij.IJ
-
Saves the current image, lookup table, selection or text window to the specified file path.
- save(ImagePlus, String) - Static method in class ij.IJ
-
Saves the specified image, lookup table or selection to the specified file path.
- save() - Method in class ij.io.FileSaver
-
Resaves the image.
- save(Roi, String) - Static method in class ij.io.RoiEncoder
-
Saves the specified ROI as a file, returning 'true' if successful.
- SAVE - Static variable in interface ij.macro.MacroConstants
-
- save(String) - Method in class ij.measure.ResultsTable
-
Saves this ResultsTable as a tab or comma delimited text file.
- save(ImagePlus, String) - Static method in class ij.plugin.GifWriter
-
Saves the specified image in GIF format or as an animated GIF if the image is a stack.
- save(ImagePlus, String, int) - Static method in class ij.plugin.JpegWriter
-
Thread-safe method.
- save(String) - Method in class ij.plugin.MeasurementsWriter
-
- save(PrintWriter) - Method in class ij.text.TextPanel
-
Writes all the text in this TextPanel to a file.
- SAVE_AS - Static variable in interface ij.macro.MacroConstants
-
- SAVE_AS_MENU - Static variable in class ij.Menus
-
- SAVE_SETTINGS - Static variable in interface ij.macro.MacroConstants
-
- saveAs(String, String) - Static method in class ij.IJ
-
- saveAs(ImagePlus, String, String) - Static method in class ij.IJ
-
- saveAs(String) - Static method in class ij.Macro
-
- saveAs(String) - Method in class ij.measure.ResultsTable
-
- saveAs() - Method in class ij.plugin.frame.Editor
-
- saveAs(String) - Method in class ij.text.TextPanel
-
Saves the text in this TextPanel to a file.
- saveAsBmp() - Method in class ij.io.FileSaver
-
Save the image in BMP format using a save file dialog.
- saveAsBmp(String) - Method in class ij.io.FileSaver
-
Save the image in BMP format using the specified path.
- saveAsByteArray(Roi) - Static method in class ij.io.RoiEncoder
-
Saves the specified ROI as a byte array.
- saveAsFits() - Method in class ij.io.FileSaver
-
Save the image in FITS format using a save file dialog.
- saveAsFits(String) - Method in class ij.io.FileSaver
-
Save the image in FITS format using the specified path.
- saveAsGif() - Method in class ij.io.FileSaver
-
Save the image in GIF format using a save file
dialog.
- saveAsGif(String) - Method in class ij.io.FileSaver
-
Save the image in Gif format using the specified path.
- saveAsJpeg() - Method in class ij.io.FileSaver
-
Save the image in JPEG format using a save file
dialog.
- saveAsJpeg(String) - Method in class ij.io.FileSaver
-
Save the image in JPEG format using the specified path.
- saveAsLut() - Method in class ij.io.FileSaver
-
Save the current LUT using a save file
dialog.
- saveAsLut(String) - Method in class ij.io.FileSaver
-
Save the current LUT using the specified path.
- saveAsPgm() - Method in class ij.io.FileSaver
-
Saves grayscale images in PGM (portable graymap) format
and RGB images in PPM (portable pixmap) format,
using a save file dialog.
- saveAsPgm(String) - Method in class ij.io.FileSaver
-
Saves grayscale images in PGM (portable graymap) format
and RGB images in PPM (portable pixmap) format,
using the specified path.
- saveAsPng() - Method in class ij.io.FileSaver
-
Save the image in PNG format using a save file dialog.
- saveAsPng(String) - Method in class ij.io.FileSaver
-
Save the image in PNG format using the specified path.
- saveAsRaw() - Method in class ij.io.FileSaver
-
Save the image or stack as raw data using a save file
dialog.
- saveAsRaw(String) - Method in class ij.io.FileSaver
-
Save the image as raw data using the specified path.
- saveAsRawStack(String) - Method in class ij.io.FileSaver
-
Save the stack as raw data using the specified path.
- saveAsText() - Method in class ij.io.FileSaver
-
Save the image as tab-delimited text using a save file
dialog.
- saveAsText(String) - Method in class ij.io.FileSaver
-
Save the image as tab-delimited text using the specified path.
- saveAsTiff(ImagePlus, String) - Static method in class ij.IJ
-
Saves the specified image in TIFF format.
- saveAsTiff() - Method in class ij.io.FileSaver
-
Saves the image or stack in TIFF format using a save file
dialog.
- saveAsTiff(String) - Method in class ij.io.FileSaver
-
Saves the image in TIFF format using the specified path.
- saveAsTiffStack(String) - Method in class ij.io.FileSaver
-
Saves the stack as a multi-image TIFF using the specified path.
- saveAsZip() - Method in class ij.io.FileSaver
-
Uses a save file dialog to save the image or stack as a TIFF
in a ZIP archive.
- saveAsZip(String) - Method in class ij.io.FileSaver
-
Save the image or stack in TIFF/ZIP format using the specified path.
- saveBitmap(String, Image, int, int) - Method in class ij.plugin.BMP_Writer
-
- saveChanges(int) - Method in class ij.VirtualStack
-
Currently not implemented
- SaveChangesDialog - Class in ij.gui
-
A modal dialog box with a one line message and
"Don't Save", "Cancel" and "Save" buttons.
- SaveChangesDialog(Frame, String) - Constructor for class ij.gui.SaveChangesDialog
-
- saveCommand() - Static method in class ij.plugin.frame.Recorder
-
Writes the current command and options to the Recorder window.
- SaveDialog - Class in ij.io
-
This class displays a dialog window from
which the user can save a file.
- SaveDialog(String, String, String) - Constructor for class ij.io.SaveDialog
-
Displays a file save dialog with 'title' as the
title, 'defaultName' as the initial file name, and
'extension' (e.g.
- SaveDialog(String, String, String, String) - Constructor for class ij.io.SaveDialog
-
Displays a file save dialog, using the specified
default directory and file name and extension.
- saveDisplayRangesAndLuts(ImagePlus, FileInfo) - Method in class ij.io.FileSaver
-
- savedPoints - Static variable in class ij.gui.PointRoi
-
- saveGlobals(Program) - Method in class ij.macro.Interpreter
-
Saves global variables.
- saveImageDescription(byte[], FileInfo) - Method in class ij.io.TiffDecoder
-
Save the image description in the specified FileInfo.
- saveLocation(String, Point) - Static method in class ij.Prefs
-
Saves the Point loc in the preferences
file as a string using the keyword key.
- saveMetadata(String, String) - Method in class ij.io.TiffDecoder
-
- saveOutput(boolean) - Static method in class ij.plugin.BatchProcessor
-
- savePlotObjects() - Method in class ij.gui.Plot
-
Creates a snapshot of the plot contents (not including axis formats etc),
for later undo by restorePlotObjects.
- savePreferences(Properties) - Static method in class ij.gui.NewImage
-
Called when ImageJ quits.
- savePreferences(Properties) - Static method in class ij.gui.PlotWindow
-
Called once when ImageJ quits.
- savePreferences(Properties) - Method in class ij.ImageJ
-
Called once when ImageJ quits.
- savePreferences(Properties) - Static method in class ij.io.ImportDialog
-
Called once when ImageJ quits.
- savePreferences(Properties) - Static method in class ij.Menus
-
Called once when ImageJ quits.
- savePreferences(Properties) - Static method in class ij.plugin.filter.Analyzer
-
Called once when ImageJ quits.
- savePreferences(Properties) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Called once when ImageJ quits.
- savePreferences() - Static method in class ij.Prefs
-
Saves user preferences in the IJ_Prefs.txt properties file.
- savePrefs(Properties, String) - Static method in class ij.Prefs
-
- savePressed() - Method in class ij.gui.SaveChangesDialog
-
Returns true if the user dismissed dialog by pressing "Save".
- saveResults(ImageStatistics, Roi) - Method in class ij.plugin.filter.Analyzer
-
Saves the measurements specified in the "Set Measurements" dialog,
or by calling setMeasurements(), in the default results table.
- saveResults(ImageStatistics, Roi) - Method in class ij.plugin.filter.ParticleAnalyzer
-
Saves statistics for one particle in a results table.
- saveRoi() - Method in class ij.ImagePlus
-
- saveRoi(ImagePlus) - Method in class ij.plugin.filter.RoiWriter
-
- saveString(String, String) - Static method in class ij.IJ
-
Saves a string as a file.
- saveThreshold(double, double, Calibration) - Method in class ij.process.ImageStatistics
-
- saveXValues - Static variable in class ij.gui.PlotWindow
-
Write first X column when listing or saving.
- saveXYCoordinates(ImagePlus) - Method in class ij.plugin.filter.XYWriter
-
- scalableLabels() - Method in class ij.gui.Overlay
-
- scale(Component) - Static method in class ij.gui.GUI
-
- scale(JComponent) - Static method in class ij.gui.GUI
-
Tries to detect if a Swing component is unscaled and scales it it according
to #getGuiScale().
- scale(Roi, double, double, boolean) - Static method in class ij.plugin.RoiScaler
-
- scale(double, double) - Method in class ij.process.ByteProcessor
-
Scales the image or selection using the specified scale factors.
- scale(double, double) - Method in class ij.process.ColorProcessor
-
Scales the image or selection using the specified scale factors.
- scale(double, double) - Method in class ij.process.FloatProcessor
-
Scales the image or selection using the specified scale factors.
- scale(double, double) - Method in class ij.process.ImageProcessor
-
Scales the image by the specified factors.
- scale(double, double) - Method in class ij.process.ShortProcessor
-
Scales the image or selection using the specified scale factors.
- scale(double, double) - Method in class ij.process.StackProcessor
-
- scale(double, double, double) - Method in class ij.process.StackProcessor
-
- SCALE_LABELS - Static variable in class ij.io.RoiDecoder
-
- SCALE_T - Static variable in class ij.plugin.Resizer
-
- scaleAndSetThreshold(double, double, int) - Method in class ij.process.ImageProcessor
-
Set the threshold using a 0-255 range.
- ScaleBar - Class in ij.plugin
-
This plugin implements the Analyze/Tools/Draw Scale Bar command.
- ScaleBar() - Constructor for class ij.plugin.ScaleBar
-
- scaled() - Method in class ij.measure.Calibration
-
Returns true if this image is spatially calibrated.
- ScaleDialog - Class in ij.plugin.filter
-
Implements the Analyze/Set Scale command.
- ScaleDialog() - Constructor for class ij.plugin.filter.ScaleDialog
-
- scalePopupMenu(PopupMenu) - Static method in class ij.gui.GUI
-
- Scaler - Class in ij.plugin
-
This plugin implements the Image/Scale command.
- Scaler() - Constructor for class ij.plugin.Scaler
-
- scaleXtoPxl(double) - Method in class ij.gui.Plot
-
Converts calibrated coordinates to pixel coordinates.
- scaleYtoPxl(double) - Method in class ij.gui.Plot
-
Converts calibrated coordinates to pixel coordinates.
- SCIENTIFIC_NOTATION - Static variable in interface ij.measure.Measurements
-
- SCREEN_HEIGHT - Static variable in interface ij.macro.MacroConstants
-
- SCREEN_WIDTH - Static variable in interface ij.macro.MacroConstants
-
- ScreenGrabber - Class in ij.plugin
-
This plugin implements the Plugins/Utilities/Capture Screen
and Plugins/Utilities/Capture Image commands.
- ScreenGrabber() - Constructor for class ij.plugin.ScreenGrabber
-
- screenX(int) - Method in class ij.gui.ImageCanvas
-
Converts an offscreen x-coordinate to a screen x-coordinate.
- screenX(int) - Method in class ij.gui.Roi
-
- screenXD(double) - Method in class ij.gui.ImageCanvas
-
Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
- screenXD(double) - Method in class ij.gui.Roi
-
- screenY(int) - Method in class ij.gui.ImageCanvas
-
Converts an offscreen y-coordinate to a screen y-coordinate.
- screenY(int) - Method in class ij.gui.Roi
-
- screenYD(double) - Method in class ij.gui.ImageCanvas
-
Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
- screenYD(double) - Method in class ij.gui.Roi
-
- scriptMode() - Static method in class ij.plugin.frame.Recorder
-
- scroll(int, int) - Method in class ij.gui.ImageCanvas
-
- scroll(int, int) - Method in class ij.gui.PlotCanvas
-
overrides ImageCanvas.scroll; if plot is not frozen, scrolling modifies the plot data range
- ScrollbarWithLabel - Class in ij.gui
-
This class, based on Joachim Walter's Image5D package, adds "c", "z" labels
and play-pause icons (T) to the stack and hyperstacks dimension sliders.
- ScrollbarWithLabel() - Constructor for class ij.gui.ScrollbarWithLabel
-
- ScrollbarWithLabel(StackWindow, int, int, int, int, char) - Constructor for class ij.gui.ScrollbarWithLabel
-
- scrollToTop() - Method in class ij.text.TextPanel
-
- SD_METHOD - Static variable in class ij.plugin.ZProjector
-
- seed - Static variable in class ij.process.ImageProcessor
-
- seek(long) - Method in class ij.io.RandomAccessStream
-
- seek(int) - Method in class ij.io.RandomAccessStream
-
- SEGMENTED - Static variable in class ij.plugin.filter.MaximumFinder
-
Output type watershed-segmented image
- SELECT - Static variable in interface ij.macro.MacroConstants
-
- select(int) - Method in class ij.plugin.frame.RoiManager
-
Assigns the ROI at the specified index to the current image.
- select(ImagePlus, int) - Method in class ij.plugin.frame.RoiManager
-
Assigns the ROI at the specified index to 'imp'.
- select(int, boolean, boolean) - Method in class ij.plugin.frame.RoiManager
-
- SELECT_IMAGE - Static variable in interface ij.macro.MacroConstants
-
- selectable(boolean) - Method in class ij.gui.Overlay
-
Set 'false' to prevent ROIs in this overlay from being activated
by clicking on their labels or by a long clicking.
- selectAll() - Method in class ij.text.TextPanel
-
Selects all the lines in this TextPanel.
- selectAndMakeVisible(ImagePlus, int) - Method in class ij.plugin.frame.RoiManager
-
- Selection - Class in ij.plugin
-
This plugin implements the commands in the Edit/Selection submenu.
- Selection() - Constructor for class ij.plugin.Selection
-
- SELECTION_CONTAINS - Static variable in interface ij.macro.MacroConstants
-
- SELECTION_NAME - Static variable in interface ij.macro.MacroConstants
-
- SELECTION_TYPE - Static variable in interface ij.macro.MacroConstants
-
- selectRow(Roi) - Static method in class ij.measure.ResultsTable
-
Selects the row in the "Results" table assocuiated with the specified Roi.
- selectWindow(int) - Static method in class ij.IJ
-
For IDs less than zero, activates the image with the specified ID.
- selectWindow(String) - Static method in class ij.IJ
-
Activates the window with the specified title.
- sendArguments(String[]) - Static method in class ij.OtherInstance
-
- SEPARATED_BAR - Static variable in class ij.gui.Plot
-
Draw a free-standing bar for each point.
- separator - Static variable in class ij.Prefs
-
file.separator system property
- serialize() - Method in class ij.io.FileSaver
-
Converts this image to a TIFF encoded array of bytes,
which can be decoded using Opener.deserialize().
- set(Roi, int) - Method in class ij.gui.Overlay
-
Replaces the ROI at the specified index.
- set(String, String) - Static method in class ij.Prefs
-
Saves the value of the string text in the preferences
file using the keyword key.
- set(String, int) - Static method in class ij.Prefs
-
Saves value in the preferences file using
the keyword key.
- set(String, double) - Static method in class ij.Prefs
-
Saves value in the preferences file using
the keyword key.
- set(String, boolean) - Static method in class ij.Prefs
-
Saves the boolean variable value in the preferences
file using the keyword key.
- set(int, int, int) - Method in class ij.process.ByteProcessor
-
- set(int, int) - Method in class ij.process.ByteProcessor
-
- set(int, int, int) - Method in class ij.process.ColorProcessor
-
- set(int, int) - Method in class ij.process.ColorProcessor
-
- set(int, int, int) - Method in class ij.process.FloatProcessor
-
- set(int, int) - Method in class ij.process.FloatProcessor
-
- set(double) - Method in class ij.process.FloatProcessor
-
- set(int, int, int) - Method in class ij.process.ImageProcessor
-
This is a faster version of putPixel() that does not clip
out of range values and does not do bounds checking.
- set(int, int) - Method in class ij.process.ImageProcessor
-
- set(double) - Method in class ij.process.ImageProcessor
-
Assigns 'value' to each pixel in the image or ROI.
- set(int, int, int) - Method in class ij.process.ShortProcessor
-
- set(int, int) - Method in class ij.process.ShortProcessor
-
- set(double) - Method in class ij.process.ShortProcessor
-
- set(int, float) - Method in class ij.util.FloatArray
-
Replaces the element at the specified position with the value given.
- set16bitRange(int) - Static method in class ij.plugin.frame.ContrastAdjuster
-
- SET_AUTO_THRESHOLD - Static variable in interface ij.macro.MacroConstants
-
- SET_BACKGROUND - Static variable in interface ij.macro.MacroConstants
-
- SET_BATCH_MODE - Static variable in interface ij.macro.MacroConstants
-
- SET_COLOR - Static variable in interface ij.macro.MacroConstants
-
- SET_FONT - Static variable in interface ij.macro.MacroConstants
-
- SET_FOREGROUND - Static variable in interface ij.macro.MacroConstants
-
- SET_JUSTIFICATION - Static variable in interface ij.macro.MacroConstants
-
- SET_KEY_DOWN - Static variable in interface ij.macro.MacroConstants
-
- SET_LINE_WIDTH - Static variable in interface ij.macro.MacroConstants
-
- SET_LOCATION - Static variable in interface ij.macro.MacroConstants
-
- SET_LUT - Static variable in interface ij.macro.MacroConstants
-
- SET_METADATA - Static variable in interface ij.macro.MacroConstants
-
- SET_MIN_MAX - Static variable in interface ij.macro.MacroConstants
-
- SET_OPTION - Static variable in interface ij.macro.MacroConstants
-
- SET_PASTE_MODE - Static variable in interface ij.macro.MacroConstants
-
- SET_PIXEL - Static variable in interface ij.macro.MacroConstants
-
- SET_RANGE - Static variable in class ij.gui.PlotDialog
-
types of dialog
- SET_RESULT - Static variable in interface ij.macro.MacroConstants
-
- SET_RGB_WEIGHTS - Static variable in interface ij.macro.MacroConstants
-
- SET_SELECTION_LOC - Static variable in interface ij.macro.MacroConstants
-
- SET_SELECTION_NAME - Static variable in interface ij.macro.MacroConstants
-
- SET_SLICE - Static variable in interface ij.macro.MacroConstants
-
- SET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
-
- SET_TOOL - Static variable in interface ij.macro.MacroConstants
-
- SET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
-
- SET_Z_COORDINATE - Static variable in interface ij.macro.MacroConstants
-
- setActivated() - Method in class ij.ImagePlus
-
Called by ImageWindow.windowActivated().
- setActiveChannels(String) - Method in class ij.ImagePlus
-
Controls which channels in a composite color image are displayed,
where 'channels' is a list of ones and zeros that specify the channels to
display.
- setAdditionalFunctions(String) - Static method in class ij.macro.Interpreter
-
The specified string, if not null, is added to strings passed to the run() method.
- setAllPoints(boolean) - Static method in class ij.gui.Wand
-
Set 'true' and output will contain intermediate points for straight lines longer than one pixel.
- setAngle(double) - Method in class ij.gui.ImageRoi
-
- setAngle(double) - Method in class ij.gui.TextRoi
-
- setAnimate(boolean) - Method in class ij.gui.StackWindow
-
- setAntiAlias(boolean) - Method in class ij.gui.Roi
-
- setAntialiased(boolean) - Method in class ij.gui.TextRoi
-
Sets the 'antiAlias' instance variable.
- setAntialiased(Graphics, boolean) - Static method in class ij.util.Java2
-
- setAntialiasedText(boolean) - Method in class ij.gui.Plot
-
Determines whether to use antialiased text (default true)
- setAntialiasedText(boolean) - Static method in class ij.gui.TextRoi
-
Sets the state of the global 'antialiasedText' variable.
- setAntialiasedText(boolean) - Method in class ij.process.ImageProcessor
-
Specifies whether or not text is drawn using antialiasing.
- setAntialiasedText(Graphics, boolean) - Static method in class ij.util.Java2
-
- setAntialiasRendering(boolean) - Method in class ij.ImagePlus
-
Enable/disable use of antialiasing by the flatten() method.
- setApplyMacroTable(ResultsTable) - Method in class ij.macro.Interpreter
-
- setAutoThreshold(ImagePlus, String) - Static method in class ij.IJ
-
- setAutoThreshold(String) - Method in class ij.process.ImageProcessor
-
Automatically sets the lower and upper threshold levels, where 'method'
must be "Default", "Huang", "Intermodes", "IsoData", "IJ_IsoData", "Li",
"MaxEntropy", "Mean", "MinError", "Minimum", "Moments", "Otsu",
"Percentile", "RenyiEntropy", "Shanbhag", "Triangle" or "Yen".
- setAutoThreshold(String, boolean, int) - Method in class ij.process.ImageProcessor
-
- setAutoThreshold(AutoThresholder.Method, boolean) - Method in class ij.process.ImageProcessor
-
- setAutoThreshold(AutoThresholder.Method, boolean, int) - Method in class ij.process.ImageProcessor
-
- setAutoThreshold(int, int) - Method in class ij.process.ImageProcessor
-
Automatically sets the lower and upper threshold levels, where 'method'
must be ISODATA or ISODATA2 and 'lutUpdate' must be RED_LUT,
BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
- setAverageWhenDownsizing(boolean) - Method in class ij.plugin.Resizer
-
- setAxes(boolean, boolean, boolean, boolean, boolean, boolean, int, int) - Method in class ij.gui.Plot
-
Sets the properties of the axes.
- setAxisLabelFont(int, float) - Method in class ij.gui.Plot
-
Sets the size of the x and y label font size and style.
- setAxisXLog(boolean) - Method in class ij.gui.Plot
-
Sets the X Axis format to Log or Linear.
- setAxisYLog(boolean) - Method in class ij.gui.Plot
-
Sets the Y Axis format to Log or Linear.
- setBackground(String) - Static method in class ij.plugin.Thresholder
-
- setBackgroundColor(Color) - Method in class ij.gui.Plot
-
Set the plot frame background color.
- setBackgroundColor(String) - Method in class ij.gui.Plot
-
Set the plot frame background color.
- setBackgroundColor(Color) - Static method in class ij.gui.Toolbar
-
- setBackgroundColor(int, int, int) - Static method in class ij.IJ
-
Sets the background color.
- setBackgroundColor(Color) - Static method in class ij.plugin.frame.Recorder
-
- setBackgroundValue(double) - Method in class ij.process.ByteProcessor
-
Sets the background fill value, where 0<=value<=255.
- setBackgroundValue(double) - Method in class ij.process.ColorProcessor
-
Sets the background fill value, where value is interpreted as an RGB int.
- setBackgroundValue(double) - Method in class ij.process.FloatProcessor
-
- setBackgroundValue(double) - Method in class ij.process.ImageProcessor
-
Sets the background fill value used by the rotate() and scale() methods.
- setBackgroundValue(double) - Method in class ij.process.ShortProcessor
-
- setBatchMode(boolean) - Method in class ij.gui.ProgressBar
-
- setBilinearInterpolation(Graphics, boolean) - Static method in class ij.util.Java2
-
- setBinaryThreshold() - Method in class ij.process.ImageProcessor
-
- setBitDepth(int) - Method in class ij.gui.PlotVirtualStack
-
- setBitDepth(int) - Method in class ij.VirtualStack
-
Sets the bit depth (8, 16, 24 or 32).
- setBlackBackground() - Static method in class ij.plugin.frame.Recorder
-
- setBlockIncrement(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setBrightness(FloatProcessor) - Method in class ij.process.ColorProcessor
-
Updates the brightness using the pixels in the specified FloatProcessor).
- setBrushSize(int) - Static method in class ij.gui.Toolbar
-
Set the size of the selection brush tool, in pixels.
- setBrushWidth(int) - Static method in class ij.plugin.tool.BrushTool
-
- setC(int) - Method in class ij.ImagePlus
-
Sets the hyperstack channel position (one based).
- setC(ImageWindow, int) - Static method in class ij.plugin.frame.SyncWindows
-
- setCalibration(Calibration) - Method in class ij.ImagePlus
-
Sets this image's calibration.
- setCalibrationTable(float[]) - Method in class ij.process.ImageProcessor
-
Set a lookup table used by getPixelValue(), getLine() and
convertToFloat() to calibrate pixel values.
- setCancelLabel(String) - Method in class ij.gui.GenericDialog
-
Sets a replacement label for the "Cancel" button.
- setCaseSensitive(boolean) - Method in class ij.util.WildcardMatch
-
Makes pattern matching case insensitive.
- setChannel(int, ByteProcessor) - Method in class ij.process.ColorProcessor
-
Sets the pixels of one color channel from a ByteProcessor.
- setChannelColorModel(IndexColorModel) - Method in class ij.CompositeImage
-
- setChannelLut(LUT) - Method in class ij.CompositeImage
-
- setChannelLut(LUT, int) - Method in class ij.CompositeImage
-
- setChannelsUpdated() - Method in class ij.CompositeImage
-
Deprecated
- setClipRect(Rectangle) - Method in class ij.process.ImageProcessor
-
Updates the clipping rectangle used by lineTo(), drawLine(), drawDot() and drawPixel().
- setColor(Color) - Method in class ij.gui.Plot
-
Changes the drawing color for the next objects that will be added to the plot.
- setColor(String) - Method in class ij.gui.Plot
-
- setColor(Color, Color) - Method in class ij.gui.Plot
-
Changes the drawing color for the next objects that will be added to the plot.
- setColor(String, String) - Method in class ij.gui.Plot
-
Sets the drawing colors for the next objects that will be added to the plot.
- setColor(Color) - Method in class ij.gui.PlotWindow
-
- setColor(Color) - Static method in class ij.gui.Roi
-
Sets the default (global) color used for ROI outlines.
- setColor(Color) - Method in class ij.gui.Toolbar
-
- setColor(Color) - Method in class ij.ImagePlus
-
Sets current foreground color.
- setColor(Color) - Method in class ij.process.ByteProcessor
-
Sets the foreground drawing color.
- setColor(Color) - Method in class ij.process.ColorProcessor
-
Sets the foreground color.
- setColor(int) - Method in class ij.process.ColorProcessor
-
Sets the fill/draw color, where color is an RGB int.
- setColor(Color) - Method in class ij.process.FloatProcessor
-
Sets the foreground fill/draw color.
- setColor(Color) - Method in class ij.process.ImageProcessor
-
Sets the default fill/draw value to the pixel
value closest to the specified color.
- setColor(int) - Method in class ij.process.ImageProcessor
-
Sets the default fill/draw value.
- setColor(double) - Method in class ij.process.ImageProcessor
-
Sets the default fill/draw value.
- setColor(Color) - Method in class ij.process.ShortProcessor
-
Sets the foreground fill/draw color.
- setColorModel(ColorModel) - Method in class ij.ImageStack
-
Assigns a new color model to this stack.
- setColorModel(ColorModel) - Method in class ij.process.ColorProcessor
-
- setColorModel(ColorModel) - Method in class ij.process.ImageProcessor
-
Sets the color model.
- setColumn(String, Variable[]) - Method in class ij.measure.ResultsTable
-
Implements the Table.setColumn() macro function.
- setColumnHeadings(String) - Static method in class ij.IJ
-
Clears the "Results" window and sets the column headings to
those in the tab-delimited 'headings' String.
- setColumnHeadings(String) - Method in class ij.text.TextPanel
-
Clears this TextPanel and sets the column headings to
those in the tab-delimited 'headings' String.
- setCommand(String) - Static method in class ij.plugin.frame.Recorder
-
Starts recording a command.
- setCommandName(String) - Static method in class ij.ImageJ
-
- setComposite(Composite) - Method in class ij.gui.ImageRoi
-
Sets the composite mode.
- setCornerDiameter(int) - Method in class ij.gui.Roi
-
Sets the rounded rectangle corner diameter (pixels).
- setCounter(int) - Method in class ij.gui.PointRoi
-
- setCounterInfo(int[]) - Method in class ij.gui.PointRoi
-
- setCounters(int[]) - Method in class ij.gui.PointRoi
-
Sets the counter number and slice number for each point from an
array, where the lower 8 bits are the counter number and the
higher 24 bits contain the slice position of each point.
- setCrossLoc(int, int, int) - Method in class ij.plugin.Orthogonal_Views
-
- setCTable(float[], String) - Method in class ij.measure.Calibration
-
Sets the calibration table.
- setCurrentFont(Font) - Method in class ij.gui.TextRoi
-
Set the current (instance) font.
- setCurrentWindow(ImageWindow) - Static method in class ij.WindowManager
-
Makes the image contained in the specified window the active image.
- setCursor(int, int, int, int) - Method in class ij.gui.ImageCanvas
-
Sets the cursor based on the current tool and cursor location.
- setCursor(Cursor, int) - Static method in class ij.gui.ImageCanvas
-
Experimental
- setCursor(ImagePlus, Roi) - Method in class ij.plugin.frame.SyncWindows
-
- setCustomRoi(boolean) - Method in class ij.gui.ImageCanvas
-
Allows plugins (e.g., Orthogonal_Views) to create a custom ROI using a display list.
- setDebugger(Debugger) - Method in class ij.macro.Interpreter
-
- setDebugMode(boolean) - Static method in class ij.IJ
-
Enable/disable debug mode.
- setDebugMode(int) - Method in class ij.macro.Interpreter
-
- setDecimalPlaces(int, int) - Method in class ij.measure.ResultsTable
-
- setDefault16bitRange(int) - Static method in class ij.ImagePlus
-
Set the default 16-bit display range, where 'bitDepth' must be 0 (auto-scaling),
8 (0-255), 10 (0-1023), 12 (0-4095, 14 (0-16383), 15 (0-32767) or 16 (0-65535).
- setDefaultAngle(double) - Static method in class ij.gui.TextRoi
-
Sets the default angle.
- setDefaultCounter(int) - Static method in class ij.gui.PointRoi
-
- setDefaultCrossColor(Color) - Static method in class ij.gui.PointRoi
-
Deprecated
- setDefaultDirectory(String) - Static method in class ij.io.DirectoryChooser
-
Sets the default directory presented in the dialog.
- setDefaultDirectory(String) - Static method in class ij.io.OpenDialog
-
Sets the current working directory.
- setDefaultDirectory(String) - Static method in class ij.plugin.frame.Editor
-
- setDefaultDoubleHeaded(boolean) - Static method in class ij.gui.Arrow
-
- setDefaultFillColor(Color) - Static method in class ij.gui.Roi
-
- setDefaultFillColor(Color) - Static method in class ij.gui.TextRoi
-
Sets the default fill (background) color.
- setDefaultHeadings() - Method in class ij.measure.ResultsTable
-
Sets the headings used by the Measure command ("Area", "Mean", etc.).
- setDefaultHeadings() - Static method in class ij.plugin.filter.Analyzer
-
Sets the default headings ("Area", "Mean", etc.).
- setDefaultHeadSize(double) - Static method in class ij.gui.Arrow
-
- setDefaultMarkerSize(String) - Static method in class ij.gui.PointRoi
-
Deprecated.
- setDefaultOutline(boolean) - Static method in class ij.gui.Arrow
-
- setDefaultSize(int) - Static method in class ij.gui.PointRoi
-
- setDefaultString(int, String) - Method in class ij.gui.GenericDialog
-
- setDefaultStyle(int) - Static method in class ij.gui.Arrow
-
- setDefaultType(int) - Static method in class ij.gui.PointRoi
-
- setDefaultWidth(double) - Static method in class ij.gui.Arrow
-
- setDialog(GenericDialog) - Method in class ij.plugin.filter.PlugInFilterRunner
-
- setDimensions(int, int, int) - Method in class ij.ImagePlus
-
Sets the 3rd, 4th and 5th dimensions, where
nChannels*nSlices*nFrames
must be equal to the stack size.
- setDisplayList(Vector) - Method in class ij.gui.ImageCanvas
-
- setDisplayList(Shape, Color, BasicStroke) - Method in class ij.gui.ImageCanvas
-
- setDisplayList(Roi, Color) - Method in class ij.gui.ImageCanvas
-
- setDisplayMode(int) - Method in class ij.ImagePlus
-
Sets the display mode of composite color images, where 'mode'
should be IJ.COMPOSITE, IJ.COLOR or IJ.GRAYSCALE.
- setDisplayRange(double, double) - Method in class ij.CompositeImage
-
- setDisplayRange(double, double) - Method in class ij.ImagePlus
-
Sets the display range of the current channel.
- setDisplayRange(double, double, int) - Method in class ij.ImagePlus
-
Sets the display range of specified channels in an RGB image, where 4=red,
2=green, 1=blue, 6=red+green, etc.
- setDoScaling(boolean) - Static method in class ij.process.ImageConverter
-
Set true to scale to 0-255 when converting short to byte or float
to byte and to 0-65535 when converting float to short.
- setDoubleHeaded(boolean) - Method in class ij.gui.Arrow
-
- setDrawingColor(int, int, boolean) - Method in class ij.gui.ImageCanvas
-
Sets the foreground drawing color (or background color if
'setBackground' is true) to the color of the pixel at (ox,oy).
- setDrawingSize(int, int) - Method in class ij.gui.ImageCanvas
-
Obsolete; replaced by setSize()
- setDrawOffset(boolean) - Method in class ij.gui.Line
-
- setDrawOffset(boolean) - Method in class ij.gui.PolygonRoi
-
- setDrawOffset(boolean) - Method in class ij.gui.Roi
-
- setDrawStringMode(boolean) - Method in class ij.gui.TextRoi
-
- setEchoChar(char) - Method in class ij.gui.GenericDialog
-
Sets the echo character for the next string field.
- setEditMode(ImagePlus, boolean) - Method in class ij.plugin.frame.RoiManager
-
- setEscapeChar(char) - Method in class ij.util.WildcardMatch
-
Sets the new character to be used as an escape character, overriding the
the default of '\'.
- setExceptionHandler(IJ.ExceptionHandler) - Static method in class ij.IJ
-
Installs a custom exception handler that
overrides the handleException() method.
- setExtension(String, String) - Static method in class ij.io.SaveDialog
-
- setExtraArrayElements(int) - Method in class ij.measure.Minimizer
-
Add a given number of extra elements to array of parameters (independent vaiables)
for private use in the user function.
- setf(int, int, float) - Method in class ij.process.ByteProcessor
-
- setf(int, float) - Method in class ij.process.ByteProcessor
-
- setf(int, int, float) - Method in class ij.process.ColorProcessor
-
- setf(int, float) - Method in class ij.process.ColorProcessor
-
- setf(int, int, float) - Method in class ij.process.FloatProcessor
-
- setf(int, float) - Method in class ij.process.FloatProcessor
-
- setf(int, int, float) - Method in class ij.process.ImageProcessor
-
Sets the value of the pixel at (x,y) to 'value'.
- setf(int, float) - Method in class ij.process.ImageProcessor
-
- setf(int, int, float) - Method in class ij.process.ShortProcessor
-
- setf(int, float) - Method in class ij.process.ShortProcessor
-
- setFileInfo(FileInfo) - Method in class ij.ImagePlus
-
Saves this image's FileInfo so it can be later
retieved using getOriginalFileInfo().
- setFileName(String) - Method in class ij.plugin.MacroInstaller
-
- setFilePath(String) - Static method in class ij.plugin.Macro_Runner
-
- setFillColor(Color) - Method in class ij.gui.Overlay
-
Sets the fill color of all the ROIs in this overlay.
- setFillColor(Color) - Method in class ij.gui.Roi
-
Sets the fill color used to display this ROI, or set to null to display it transparently.
- setFlattenScale(double) - Method in class ij.gui.Roi
-
- setFloatArray(float[][]) - Method in class ij.process.ImageProcessor
-
Replaces the pixel data with contents of the specified 2D float array.
- setFocusable(boolean) - Method in class ij.gui.ScrollbarWithLabel
-
- setFont(Font) - Method in class ij.gui.GenericDialog
-
- setFont(Font) - Method in class ij.gui.MultiLineLabel
-
- setFont(Font) - Method in class ij.gui.Plot
-
Sets the font for all following addLabel() etc.
- setFont(int, float) - Method in class ij.gui.Plot
-
Sets the font size and style for all following addLabel() etc.
- setFont(String, int, int) - Static method in class ij.gui.TextRoi
-
Sets the global font face, size and style that will be used by
TextROIs interactively created using the text tool.
- setFont(String, int, int, boolean) - Static method in class ij.gui.TextRoi
-
Sets the font face, size, style and antialiasing mode that will
be used by TextROIs interactively created using the text tool.
- setFont(Font) - Method in class ij.plugin.frame.Editor
-
- setFont(Font) - Method in class ij.process.ImageProcessor
-
Sets the font used by drawString().
- setFont(Font, boolean) - Method in class ij.text.TextPanel
-
- setFontColor(String) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the color ("blue", "black", etc.) of the font used to label outlines in the next particle analyzer instance.
- setFontSize(int) - Static method in class ij.Menus
-
Set the size (in points) used for the fonts in ImageJ menus.
- setFontSize(int) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the size of the font used to label outlines in the next particle analyzer instance.
- setFontSize(int) - Method in class ij.plugin.MontageMaker
-
- setForegroundColor(Color) - Static method in class ij.gui.Toolbar
-
- setForegroundColor(int, int, int) - Static method in class ij.IJ
-
Sets the foreground color.
- setForegroundColor(Color) - Static method in class ij.plugin.frame.Recorder
-
- setFormatFlags(int) - Method in class ij.gui.Plot
-
Sets the flags that control the axes format.
- setFrameSize(int, int) - Method in class ij.gui.Plot
-
Sets the plot frame size in (unscaled) pixels.
- setFromFloatArrays(float[][]) - Method in class ij.process.ByteProcessor
-
- setFromFloatProcessors(FloatProcessor[]) - Method in class ij.process.ByteProcessor
-
- setFrozen(boolean) - Method in class ij.gui.Plot
-
Freezes or unfreezes the plot.
- setFunction(int, double[], String) - Method in class ij.measure.Calibration
-
Sets the calibration function, coefficient table and unit (e.g.
- setFunction(int, double[], String, boolean) - Method in class ij.measure.Calibration
-
- setFunction(UserFunction, int) - Method in class ij.measure.Minimizer
-
Set the the target function, i.e.
- setGlobalCalibration(Calibration) - Method in class ij.ImagePlus
-
Sets the system-wide calibration.
- setGlobalJustification(int) - Static method in class ij.gui.TextRoi
-
Sets the 'justification' instance variable (must be LEFT, CENTER or RIGHT)
- setGuiScale(double) - Static method in class ij.Prefs
-
Sets the GenericDialog and Command Finder text scale (0.5 to 3.0).
- setHeading(int, String) - Method in class ij.measure.ResultsTable
-
- setHeadSize(double) - Method in class ij.gui.Arrow
-
- setHelpLabel(String) - Method in class ij.gui.GenericDialog
-
Sets a replacement label for the "Help" button.
- setHideLabels(boolean) - Method in class ij.gui.PointRoi
-
Deprecated.
- setHideOutputImage(boolean) - Method in class ij.plugin.filter.ParticleAnalyzer
-
Set 'hideOutputImage' true to not display the "Show:" image.
- setHideOverlay(boolean) - Method in class ij.ImagePlus
-
- setHistogramRange(double, double) - Method in class ij.process.ImageProcessor
-
Set the range used for histograms of float images.
- setHistogramSize(int) - Method in class ij.process.ImageProcessor
-
Set the number of bins to be used for histograms of float images.
- setHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
-
Sets the current pixels from 3 byte arrays (hue, saturation and brightness).
- setIgnoreClipRect(boolean) - Method in class ij.gui.Roi
-
- setIgnoreErrors(boolean) - Method in class ij.macro.Interpreter
-
- setIgnoreFlush(boolean) - Method in class ij.ImagePlus
-
- setIgnoreGlobalCalibration(boolean) - Method in class ij.ImagePlus
-
- setIJMenuBar - Variable in class ij.ImagePlus
-
- setIJMenuBar(boolean) - Method in class ij.ImagePlus
-
- setIJMenuBar() - Method in class ij.ImagePlus
-
- setIJMenuBar - Static variable in class ij.Prefs
-
Set MenuBar on Macs running Java 8.
- setIm5D(boolean) - Method in class ij.plugin.Concatenator
-
- setImage(ImagePlus) - Method in class ij.gui.ImageWindow
-
- setImage(ImagePlus) - Method in class ij.gui.Roi
-
- setImage(Image) - Method in class ij.ImagePlus
-
Replaces the image, if any, with the one specified.
- setImage(ImagePlus) - Method in class ij.ImagePlus
-
Replaces this image with the specified ImagePlus.
- setImage(ImagePlus) - Method in class ij.measure.Calibration
-
Disables the density calibation if the specified image has a differenent bit depth.
- setImage(ImagePlus) - Method in class ij.plugin.ZProjector
-
Explicitly set image to be projected.
- setImageJMenuBar(ImageWindow) - Static method in class ij.gui.ImageWindow
-
- setImagePlus(ImagePlus) - Method in class ij.gui.Plot
-
Sets the ImagePlus where the plot will be displayed.
- setImagesURL(String) - Static method in class ij.Prefs
-
Sets the URL of the directory that contains the ImageJ sample images.
- setImageUpdated() - Method in class ij.gui.ImageCanvas
-
ImagePlus.updateAndDraw calls this method to force the paint()
method to update the image from the ImageProcessor.
- setInitialParameters(double[]) - Method in class ij.measure.CurveFitter
-
Sets the initial parameters, which override the default initial parameters.
- setInputEvent(InputEvent) - Static method in class ij.IJ
-
- setInsets(int, int, int) - Method in class ij.gui.GenericDialog
-
Set the insets (margins), in pixels, that will be
used for the next component added to the dialog
(except components added to the same row with addToSameRow)
- setInstanceColor(Color) - Method in class ij.gui.Roi
-
- setIntArray(int[][]) - Method in class ij.process.ImageProcessor
-
Replaces the pixel data with contents of the specified 2D int array.
- setInterpolate(boolean) - Method in class ij.process.ImageProcessor
-
This method has been replaced by setInterpolationMethod().
- setInterpolationMethod(int) - Method in class ij.process.ImageProcessor
-
Use this method to set the interpolation method (NONE,
BILINEAR or BICUBIC) used by scale(), resize() and rotate().
- setInvertY(boolean) - Method in class ij.measure.Calibration
-
Sets the 'invertY' flag.
- setIsCalibrationBar(boolean) - Method in class ij.gui.Overlay
-
- setIsCursor(boolean) - Method in class ij.gui.Roi
-
- setIsMacroWindow(boolean) - Method in class ij.plugin.frame.Editor
-
- setJpegQuality(int) - Static method in class ij.io.FileSaver
-
Specifies the image quality (0-100).
- setJustification(int) - Method in class ij.gui.Plot
-
Sets the justification used by addLabel(), where justification
is Plot.LEFT, Plot.CENTER or Plot.RIGHT.
- setJustification(int) - Method in class ij.gui.TextRoi
-
Sets the 'justification' instance variable (must be LEFT, CENTER or RIGHT)
- setJustification(int) - Method in class ij.process.ImageProcessor
-
Sets the justification used by drawString(), where justification
is CENTER_JUSTIFY, RIGHT_JUSTIFY or LEFT_JUSTIFY.
- setKeyDown(int) - Static method in class ij.IJ
-
- setKeyUp(int) - Static method in class ij.IJ
-
- setLabel(String, int) - Method in class ij.measure.ResultsTable
-
Adds a label to the beginning of the specified row,
or updates an existing lable, where 0<=row
- setLabelColor(Color) - Method in class ij.gui.Overlay
-
- setLabelFont(Font) - Method in class ij.gui.Overlay
-
- setLabelFont(Font, boolean) - Method in class ij.gui.Overlay
-
- setLabelFontSize(int, String) - Method in class ij.gui.Overlay
-
Set the label font size with options.
- setLastDirectory(String) - Static method in class ij.io.OpenDialog
-
Sets the path to the directory containing the last file opened by the user.
- setLastName(String) - Static method in class ij.io.OpenDialog
-
Sets the name of the last file opened by the user.
- setLegend(String, int) - Method in class ij.gui.Plot
-
Adds a legend.
- setLimits(double, double, double, double) - Method in class ij.gui.Plot
-
Sets the x-axis and y-axis range.
- setLimits(double[]) - Method in class ij.gui.Plot
-
Sets the current limits from an array xMin, xMax, yMin, yMax
The array may be also longer or shorter, but should not contain NaN values.
- setLimits(double, double, double, double) - Method in class ij.gui.PlotWindow
-
- setLimitsToDefaults(boolean) - Method in class ij.gui.Plot
-
Sets the plot range to the initial value determined from minima&maxima or given by setLimits.
- setLimitsToFit(boolean) - Method in class ij.gui.Plot
-
Sets the plot range to encompass all data.
- setLine(int, String) - Method in class ij.text.TextPanel
-
Replaces the contents of the specified line, where 'index'
must be greater than or equal to zero and less than
the value returned by getLineCount().
- setLineWidth(int) - Method in class ij.gui.Plot
-
Changes the line width for the next objects that will be added to the plot.
- setLineWidth(float) - Method in class ij.gui.Plot
-
Changes the line width for the next objects that will be added to the plot.
- setLineWidth(int) - Method in class ij.gui.PlotWindow
-
- setLineWidth(int) - Method in class ij.gui.Roi
-
- setLineWidth(int) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the outline line width for the next ParticleAnalyzer instance.
- setLineWidth(int) - Method in class ij.process.ImageProcessor
-
Sets the line width used by lineTo() and drawDot().
- setLocation(int, int) - Method in class ij.gui.GenericDialog
-
- setLocation(int, int) - Method in class ij.gui.Line
-
- setLocation(double, double) - Method in class ij.gui.PolygonRoi
-
- setLocation(int, int) - Method in class ij.gui.Roi
-
Set the location of the ROI in image coordinates.
- setLocation(double, double) - Method in class ij.gui.Roi
-
Set the location of the ROI in image coordinates.
- setLocationAndSize(int, int, int, int) - Method in class ij.gui.ImageWindow
-
Moves and resizes this window.
- setLogScaleX() - Method in class ij.gui.Plot
-
Sets log scale in x.
- setLogScaleY() - Method in class ij.gui.Plot
-
- setLoopBackAndForth(boolean) - Static method in class ij.measure.Calibration
-
Set the default state of the animation "Loop back and forth" flag
- setLut(LUT) - Method in class ij.ImagePlus
-
Assigns a LUT (lookup table) to this image.
- setLut(LUT) - Method in class ij.process.ImageProcessor
-
- setLutAnimation(boolean) - Method in class ij.process.FloatProcessor
-
- setLutAnimation(boolean) - Method in class ij.process.ImageProcessor
-
For 16 and 32 bit processors, set 'lutAnimation' true
to have createImage() use the cached 8-bit version
of the image.
- setLutAnimation(boolean) - Method in class ij.process.ShortProcessor
-
- setLuts(LUT[]) - Method in class ij.CompositeImage
-
- setMagnification(double) - Method in class ij.gui.ImageCanvas
-
- setMagnification(double) - Method in class ij.gui.PlotCanvas
-
The image of a PlotCanvas is always shown at 100% magnification unless the plot is frozen
- setMask(ImageProcessor) - Method in class ij.process.ImageProcessor
-
Defines a byte mask that limits processing to an
irregular ROI.
- setMaxError(double) - Method in class ij.measure.CurveFitter
-
Set the maximum error.
- setMaxError(double) - Method in class ij.measure.Minimizer
-
Sets the accuracy of convergence.
- setMaxError(double, double) - Method in class ij.measure.Minimizer
-
Sets the accuracy of convergence.
- setMaximum(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setMaximumThreads(int) - Method in class ij.measure.Minimizer
-
Call setMaximuThreads(1) to avoid multi-threaded execution (in case the user-provided
target function does not allow moultithreading).
- setMaxIntervals(int) - Method in class ij.gui.Plot
-
Sets the maximum number of intervals in a plot.
- setMaxIterations(int) - Method in class ij.measure.CurveFitter
-
Set maximum number of iterations allowed (sum of iteration count for all restarts)
- setMaxIterations(int) - Method in class ij.measure.Minimizer
-
Set maximum number of iterations allowed (including all restarts and all threads).
- setMaxRestarts(int) - Method in class ij.measure.Minimizer
-
Set maximum number of minimization restarts to do.
- setMeasurement(int, boolean) - Static method in class ij.plugin.filter.Analyzer
-
Sets the specified system-wide measurement option.
- setMeasurements(int) - Static method in class ij.plugin.filter.Analyzer
-
Sets the system-wide measurement options.
- setMenuBarCount - Static variable in class ij.Menus
-
- setMenuBarTime - Static variable in class ij.gui.ImageWindow
-
- setMethod(String) - Static method in class ij.plugin.frame.ThresholdAdjuster
-
Sets the thresholding method ("Default", "Huang", etc).
- setMethod(String) - Static method in class ij.plugin.Thresholder
-
- setMethod(int) - Method in class ij.plugin.ZProjector
-
- setMinAndMax(double, double) - Static method in class ij.gui.ProfilePlot
-
Sets the y-axis min and max.
- setMinAndMax(double, double) - Static method in class ij.IJ
-
Sets the display range (minimum and maximum displayed pixel values) of the current image.
- setMinAndMax(ImagePlus, double, double) - Static method in class ij.IJ
-
Sets the display range (minimum and maximum displayed pixel values) of the specified image.
- setMinAndMax(double, double, int) - Static method in class ij.IJ
-
Sets the minimum and maximum displayed pixel values on the specified RGB
channels, where 4=red, 2=green and 1=blue.
- setMinAndMax(double, double) - Method in class ij.process.ByteProcessor
-
Maps the entries in this image's LUT from min-max to 0-255.
- setMinAndMax(double, double) - Method in class ij.process.ColorProcessor
-
Uses a table look-up to map the pixels in this image from min-max to 0-255.
- setMinAndMax(double, double, int) - Method in class ij.process.ColorProcessor
-
- setMinAndMax(double, double) - Method in class ij.process.FloatProcessor
-
Sets the min and max variables that control how real
pixel values are mapped to 0-255 screen values.
- setMinAndMax(double, double) - Method in class ij.process.ImageProcessor
-
This image will be displayed by mapping pixel values in the
range min-max to screen values in the range 0-255.
- setMinAndMax(double, double) - Method in class ij.process.ShortProcessor
-
Sets the min and max variables that control how real
pixel values are mapped to 0-255 screen values.
- setMinimum(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setMinorTickLength(int) - Method in class ij.gui.Plot
-
Sets the length of the minor tick in pixels.
- setMode(int) - Method in class ij.CompositeImage
-
- setMode(String) - Static method in class ij.plugin.frame.ThresholdAdjuster
-
Sets the current mode ("Red","B&W" or"Over/Under").
- setName(String) - Method in class ij.gui.Roi
-
Sets the name of this ROI.
- setNaNEmptyCells(boolean) - Method in class ij.measure.ResultsTable
-
Set 'true' to initially fill data arrays with NaNs instead of zeros.
- setNextLocation(Point) - Static method in class ij.gui.ImageWindow
-
Causes the next image to be displayed at the specified location.
- setNextLocation(int, int) - Static method in class ij.gui.ImageWindow
-
Causes the next image to be displayed at the specified location.
- setNextLocation(int, int) - Static method in class ij.gui.WaitForUserDialog
-
Display the next WaitForUser dialog at the specified location.
- setNonScalable(boolean) - Method in class ij.gui.Roi
-
Set 'nonScalable' true to have TextRois in a display
list drawn at a fixed location and size.
- setNormalize(boolean) - Method in class ij.plugin.ContrastEnhancer
-
- setNormalize(boolean) - Method in class ij.plugin.filter.Convolver
-
If 'normalize' is true (the default), the convolve(), convolveFloat() and
convolveFloat1D() (4 argument version) methods divide each kernel
coefficient by the sum of the coefficients, preserving image brightness.
- setNPasses(int) - Method in class ij.plugin.filter.BackgroundSubtracter
-
- setNPasses(int) - Method in class ij.plugin.filter.Binary
-
- setNPasses(int) - Method in class ij.plugin.filter.Convolver
-
- setNPasses(int) - Method in class ij.plugin.filter.EDM
-
Prepare the progress bar.
- setNPasses(int) - Method in interface ij.plugin.filter.ExtendedPlugInFilter
-
This method is called by ImageJ to inform the plugin-filter
about the passes to its run method.
- setNPasses(int) - Method in class ij.plugin.filter.GaussianBlur
-
Set the number of passes of the blur1Direction method.
- setNPasses(int) - Method in class ij.plugin.filter.ImageMath
-
- setNPasses(int) - Method in class ij.plugin.filter.MaximumFinder
-
Set his to the number of images to process (for the watershed progress bar only).
- setNPasses(int) - Method in class ij.plugin.filter.RankFilters
-
This method is called by ImageJ to set the number of calls to run(ip)
corresponding to 100% of the progress bar
- setNPasses(int) - Method in class ij.plugin.filter.Rotator
-
- setNPasses(int) - Method in class ij.plugin.filter.StackLabeler
-
- setNPasses(int) - Method in class ij.plugin.filter.Translator
-
- setNPasses(int) - Method in class ij.plugin.filter.UnsharpMask
-
Since most computing time is spent in GaussianBlur, forward the
information about the number of passes to Gaussian Blur.
- setOffsetMultiplySlopeParams(int, int, int) - Method in class ij.measure.CurveFitter
-
For improved fitting performance when using a custom fit formula, one may
specify parameters that can be calculated directly by linear regression.
- setOKLabel(String) - Method in class ij.gui.GenericDialog
-
Sets a replacement label for the "OK" button.
- setOpacity(double) - Method in class ij.gui.ImageRoi
-
Sets the composite mode using the specified opacity (alpha), in the
range 0.0-1.0, where 0.0 is fully transparent and 1.0 is fully opaque.
- setOpenAsHyperStack(boolean) - Method in class ij.ImagePlus
-
- setOpenUsingPlugins(boolean) - Static method in class ij.io.Opener
-
Open all images using HandleExtraFileTypes.
- setOption(String, boolean) - Static method in class ij.plugin.filter.Analyzer
-
- setOptions(String) - Static method in class ij.Macro
-
Define a set of Macro options for the current Thread.
- setOptions(Thread, String) - Static method in class ij.Macro
-
Define a set of Macro options for a Thread.
- setOutline(boolean) - Method in class ij.gui.Arrow
-
- setOutputType(int) - Static method in class ij.plugin.filter.EDM
-
Sets the output type (BYTE_OVERWRITE, BYTE, SHORT or FLOAT)
- setOverColor(int, int, int) - Static method in class ij.process.ImageProcessor
-
Sets the upper Over/Under threshold color.
- setOverlay(Overlay) - Method in class ij.gui.ImageCanvas
-
Use ImagePlus.setOverlay(ij.gui.Overlay).
- setOverlay(Overlay) - Method in class ij.ImagePlus
-
Installs a list of ROIs that will be drawn on this image as a non-destructive overlay.
- setOverlay(Shape, Color, BasicStroke) - Method in class ij.ImagePlus
-
Creates an Overlay from the specified Shape, Color
and BasicStroke, and assigns it to this image.
- setOverlay(Roi, Color, int, Color) - Method in class ij.ImagePlus
-
Creates an Overlay from the specified ROI, and assigns it to this image.
- setOverlay(Overlay) - Method in class ij.plugin.frame.RoiManager
-
- setOverlay(Overlay) - Method in class ij.process.ImageProcessor
-
This method is used to display virtual stack overlays.
- setPaintPending(boolean) - Method in class ij.gui.ImageCanvas
-
- setParamResolutions(double[]) - Method in class ij.measure.Minimizer
-
Set the resolution of the parameters, for problems where the target function is not smooth
but suffers from numerical noise.
- setPasteMode(int) - Static method in class ij.gui.Roi
-
Sets the Paste transfer mode.
- setPasteMode(String) - Static method in class ij.IJ
-
Sets the transfer mode used by the Edit/Paste command, where mode is "Copy", "Blend", "Average", "Difference",
"Transparent", "Transparent2", "AND", "OR", "XOR", "Add", "Subtract", "Multiply", or "Divide".
- setPixels(Object, int) - Method in class ij.gui.PlotVirtualStack
-
- setPixels(Object, int) - Method in class ij.ImageStack
-
Assigns a pixel array to the specified slice,
were 1<=n<=nslices.
- setPixels(Object) - Method in class ij.process.ByteProcessor
-
- setPixels(int, FloatProcessor) - Method in class ij.process.ByteProcessor
-
Sets the pixels from a FloatProcessor, no scaling.
- setPixels(Object) - Method in class ij.process.ColorProcessor
-
- setPixels(int, FloatProcessor) - Method in class ij.process.ColorProcessor
-
Sets the pixels of one color channel from a FloatProcessor.
- setPixels(Object) - Method in class ij.process.FloatProcessor
-
- setPixels(int, FloatProcessor) - Method in class ij.process.FloatProcessor
-
Sets the pixels, and min&max values from a FloatProcessor.
- setPixels(Object) - Method in class ij.process.ImageProcessor
-
Sets a new pixel array for the image.
- setPixels(int, FloatProcessor) - Method in class ij.process.ImageProcessor
-
Sets the pixels (of one color channel for RGB images) from a FloatProcessor.
- setPixels(Object) - Method in class ij.process.ShortProcessor
-
- setPixels(int, FloatProcessor) - Method in class ij.process.ShortProcessor
-
Sets the pixels from a FloatProcessor, no scaling.
- setPixels(Object, int) - Method in class ij.VirtualStack
-
Assigns a pixel array to the specified slice,
were 1<=n<=nslices.
- setPlot(Plot) - Method in class ij.gui.PlotCanvas
-
Tells the PlotCanvas which plot to use for zooming etc.
- setPlot(Plot) - Method in class ij.gui.PlotWindow
-
Sets the Plot object shown in this PlotWindow.
- setPlot(Plot) - Method in class ij.ImagePlus
-
- setPlotMaker(PlotMaker) - Method in class ij.gui.Plot
-
- setPlotObjectLabel(int, String) - Method in class ij.gui.Plot
-
Set the label the i-th PlotObject (in the sequence how they were added, including hidden ones)
- setPlotObjectStyle(int, String) - Method in class ij.gui.Plot
-
- setPointType(int) - Method in class ij.gui.PointRoi
-
Sets the point type (0=hybrid, 1=cross, 2=dot, 3=circle).
- setPolygon(int[], int[], int) - Method in class ij.process.PolygonFiller
-
Specifies the polygon to be filled.
- setPolygon(float[], float[], int, float, float) - Method in class ij.process.PolygonFiller
-
Specifies the polygon to be filled in case of float coordinates.
- setPosition(int) - Method in class ij.gui.Roi
-
Sets the stack position (image number) of this ROI.
- setPosition(int, int, int) - Method in class ij.gui.Roi
-
Sets the hyperstack position of this ROI.
- setPosition(ImagePlus) - Method in class ij.gui.Roi
-
Sets the position of this ROI based on the stack position of the specified image.
- setPosition(int, int, int) - Method in class ij.gui.StackWindow
-
- setPosition(int, int, int) - Method in class ij.ImagePlus
-
Sets the current hyperstack position and updates the display,
where 'channel', 'slice' and 'frame' are one-based indexes.
- setPosition(int) - Method in class ij.ImagePlus
-
Set the current hyperstack position based on the stack index 'n' (one-based).
- setPositionWithoutUpdate(int, int, int) - Method in class ij.ImagePlus
-
Sets the current hyperstack position without updating the display,
where 'channel', 'slice' and 'frame' are one-based indexes.
- setPrecision(int) - Method in class ij.measure.ResultsTable
-
Sets the decimal places (digits to the right of decimal point)
that are used when this table is displayed.
- setPrecision(int) - Static method in class ij.plugin.filter.Analyzer
-
Sets the number of digits displayed to the right of decimal point.
- setPreviousMinMax() - Method in class ij.gui.Plot
-
reverts plot range to previous values and updates the image
- setPreviousRoi(Roi) - Method in class ij.gui.TextRoi
-
- setProcessor(ImageProcessor) - Method in class ij.gui.ImageRoi
-
- setProcessor(ImageProcessor) - Method in class ij.ImagePlus
-
Replaces the ImageProcessor with the one specified and updates the
display.
- setProcessor(String, ImageProcessor) - Method in class ij.ImagePlus
-
Replaces the ImageProcessor with the one specified and updates the display.
- setProcessor(ImageProcessor, int) - Method in class ij.ImageStack
-
Assigns the pixel array of an ImageProcessor to the
specified slice, were 1<=n<=nslices.
- setProcessStack(boolean) - Method in class ij.plugin.ContrastEnhancer
-
- setProgressBar(ProgressBar) - Method in class ij.process.ImageProcessor
-
Assigns a progress bar to this processor.
- setProperties(String) - Method in class ij.gui.Roi
-
- setProperty(String, String) - Method in class ij.gui.Roi
-
- setProperty(String, Object) - Static method in class ij.IJ
-
Adds a key-value pair to IJ.properties.
- setProperty(String, Object) - Method in class ij.ImagePlus
-
Adds a key-value pair to this image's properties.
- setPrototypeOverlay(Overlay) - Method in class ij.gui.Roi
-
- setQuality(int) - Static method in class ij.plugin.JpegWriter
-
- setRandomSeed(int) - Method in class ij.measure.Minimizer
-
Set a seed to initialize the random number generator, which is used for initialization
of the simplex.
- setRandomSeed(double) - Static method in class ij.process.ImageProcessor
-
- setRawThreshold(ImagePlus, double, double, String) - Static method in class ij.IJ
-
This is a version of setThreshold() that always uses raw (uncalibrated) values
in the range 0-255 for 8-bit images and 0-65535 for 16-bit images.
- setRedirectImage(ImagePlus) - Static method in class ij.plugin.filter.Analyzer
-
Set the "Redirect To" image.
- setRenderingHint(Graphics2D) - Method in class ij.gui.Roi
-
- setRestarts(int) - Method in class ij.measure.CurveFitter
-
Set maximum number of simplex restarts to do.
- setResultsTable(ResultsTable) - Static method in class ij.plugin.filter.Analyzer
-
- setResultsTable(ResultsTable) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the ResultsTable to be used by the next
ParticleAnalyzer instance.
- setResultsTable(ResultsTable) - Method in class ij.text.TextPanel
-
Sets the ResultsTable associated with this TextPanel.
- setRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor
-
Sets the current pixels from 3 byte arrays (reg, green, blue).
- setRGBWeights(double, double, double) - Method in class ij.process.ColorProcessor
-
This is a thread-safe (non-static) version of setWeightingFactors().
- setRGBWeights(double[]) - Method in class ij.process.ColorProcessor
-
This is a thread-safe (non-static) version of setWeightingFactors().
- setRoi(Roi) - Method in class ij.ImagePlus
-
Assigns the specified ROI to this image and displays it.
- setRoi(Roi, boolean) - Method in class ij.ImagePlus
-
Assigns 'newRoi' to this image and displays it if 'updateDisplay' is true.
- setRoi(int, int, int, int) - Method in class ij.ImagePlus
-
Creates a rectangular selection.
- setRoi(Rectangle) - Method in class ij.ImagePlus
-
Creates a rectangular selection.
- setRoi(Rectangle) - Method in class ij.ImageStack
-
- setRoi(Roi, int) - Method in class ij.plugin.frame.RoiManager
-
Replaces the ROI at the specified index.
- setRoi(Rectangle) - Method in class ij.process.ImageProcessor
-
Defines a rectangular region of interest and sets the mask
to null if this ROI is not the same size as the previous one.
- setRoi(int, int, int, int) - Method in class ij.process.ImageProcessor
-
Defines a rectangular region of interest and sets the mask to
null if this ROI is not the same size as the previous one.
- setRoi(Roi) - Method in class ij.process.ImageProcessor
-
Defines a non-rectangular region of interest that will consist of a
rectangular ROI and a mask.
- setRoi(Polygon) - Method in class ij.process.ImageProcessor
-
Defines a polygonal region of interest that will consist of a
rectangular ROI and a mask.
- setRoiManager(RoiManager) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the RoiManager to be used by the next ParticleAnalyzer
instance.
- setRotationCenter(double, double) - Method in class ij.gui.Roi
-
- setRoundRectArcSize(int) - Method in class ij.gui.Roi
-
Obsolete; replaced by setCornerDiameter().
- setRoundRectArcSize(int) - Static method in class ij.gui.Toolbar
-
Sets the rounded rectangle corner diameter (pixels).
- setScale(float) - Method in class ij.gui.Plot
-
Sets the scale.
- setScaleToFit(boolean) - Method in class ij.gui.ImageCanvas
-
- setSelectedIndexes(int[]) - Method in class ij.plugin.frame.RoiManager
-
Selects multiple ROIs, where 'indexes' is an array of integers, each
greater than or equal to 0 and less than the value returned by getCount().
- setSelection(int, int) - Method in class ij.text.TextPanel
-
Creates a selection and insures that it is visible.
- setShowAllColor(Color) - Static method in class ij.gui.ImageCanvas
-
Obsolete
- setShowAllList(Overlay) - Method in class ij.gui.ImageCanvas
-
- setShowAllROIs(boolean) - Method in class ij.gui.ImageCanvas
-
Obsolete
- setShowConflictMessage(boolean) - Static method in class ij.io.FileOpener
-
- setShowCursorStatus(boolean) - Method in class ij.gui.ImageCanvas
-
Called by IJ.showStatus() to prevent status bar text from
being overwritten until the cursor moves at least 12 pixels.
- setShowLabels(boolean) - Method in class ij.gui.PointRoi
-
- setShowProgress(boolean) - Method in class ij.process.FHT
-
Enables/disables display of the progress bar during transforms.
- setSigned16BitCalibration() - Method in class ij.measure.Calibration
-
Sets up a calibration function that subtracts 32,768 from pixel values.
- setSilentMode(boolean) - Method in class ij.io.Opener
-
The "Opening: path" status message is not displayed in silent mode.
- setSize(int, int) - Method in class ij.gui.ImageCanvas
-
- setSize(int, int) - Method in class ij.gui.Plot
-
Sets the canvas size in (unscaled) pixels and sets the scale to 1.0.
- setSize(int) - Method in class ij.gui.PointRoi
-
Sets the point size, where 'size' is 0-4.
- setSize(int) - Method in class ij.util.ArrayUtil
-
- setSlice(int) - Static method in class ij.IJ
-
Switches to the specified stack slice, where 1<='slice'<=stack-size.
- setSlice(int) - Method in class ij.ImagePlus
-
Displays the specified stack image, where 1<=n<=stackSize.
- setSliceLabel(String, int) - Method in class ij.ImageStack
-
Sets the label of the specified slice, were 1<=n<=nslices.
- setSliceLabel(String, int) - Method in class ij.VirtualStack
-
Does nothing.
- setSliceNumber(int) - Method in class ij.process.ImageProcessor
-
PlugInFilterRunner uses this method to set the slice number.
- setSliceWithoutUpdate(int) - Method in class ij.ImagePlus
-
Displays the specified stack image (1<=n<=stackSize)
without updating the display.
- setSliderHeight(int) - Method in class ij.gui.ImageWindow
-
- setSmartRecording(boolean) - Method in class ij.gui.GenericDialog
-
Unchanged parameters are not recorder in 'smart recording' mode.
- setSnapshotCopyMode(boolean) - Method in class ij.process.ImageProcessor
-
The getPixelsCopy() method returns a reference to the
snapshot buffer if it is not null and 'snapshotCopyMode' is true.
- setSnapshotPixels(Object) - Method in class ij.process.ByteProcessor
-
- setSnapshotPixels(Object) - Method in class ij.process.ColorProcessor
-
- setSnapshotPixels(Object) - Method in class ij.process.FloatProcessor
-
- setSnapshotPixels(Object) - Method in class ij.process.ImageProcessor
-
Sets a new pixel array for the snapshot (undo) buffer.
- setSnapshotPixels(Object) - Method in class ij.process.ShortProcessor
-
- setSourceRect(Rectangle) - Method in class ij.gui.ImageCanvas
-
Sets the region of the image (in pixels) to be displayed.
- setSourceRect(Rectangle) - Method in class ij.gui.PlotCanvas
-
Scrolling a PlotCanvas is updating the plot, not viewing part of the plot, unless the plot is frozen
- setStack(ImageStack) - Method in class ij.ImagePlus
-
Replaces the image with the specified stack and updates the display.
- setStack(String, ImageStack) - Method in class ij.ImagePlus
-
Replaces the image with the specified stack and updates
the display.
- setStack(ImageStack, int, int, int) - Method in class ij.ImagePlus
-
- setStart(int, int) - Static method in class ij.plugin.WandToolOptions
-
- setStartSlice(int) - Method in class ij.plugin.ZProjector
-
- setStatusAndEsc(String, boolean) - Method in class ij.measure.CurveFitter
-
Create output on the number of iterations in the ImageJ Status line, e.g.
- setStatusAndEsc(String, boolean) - Method in class ij.measure.Minimizer
-
Create output on the number of iterations in the ImageJ Status line, e.g.
- setStopSlice(int) - Method in class ij.plugin.ZProjector
-
- setStroke(BasicStroke) - Method in class ij.gui.Roi
-
Sets the Stroke used to draw this ROI.
- setStrokeColor(Color) - Method in class ij.gui.Overlay
-
Sets the stroke color of all the ROIs in this overlay.
- setStrokeColor(Color) - Method in class ij.gui.Roi
-
Sets the color used by this ROI to draw its outline.
- setStrokeWidth(float) - Method in class ij.gui.Line
-
- setStrokeWidth(Double) - Method in class ij.gui.Overlay
-
Sets the stroke width of all the ROIs in this overlay.
- setStrokeWidth(float) - Method in class ij.gui.Roi
-
Sets the width of the line used to draw this ROI.
- setStrokeWidth(double) - Method in class ij.gui.Roi
-
This is a version of setStrokeWidth() that accepts a double argument.
- setStyle(int) - Method in class ij.gui.Arrow
-
- setStyle(String) - Method in class ij.gui.Arrow
-
- setStyle(int, String) - Method in class ij.gui.Plot
-
Sets the style of the specified PlotObject (curve, label, etc.) from a
comma-delimited string ("color1,color2,lineWidth[,symbol][,hidden]"),
where "color2" can be "none" and "symbol" and "hidden" are optional.
- setSummaryTable(ResultsTable) - Static method in class ij.plugin.filter.ParticleAnalyzer
-
Sets the ResultsTable to be used by the next
ParticleAnalyzer instance for the summary.
- setSystemLookAndFeel() - Static method in class ij.util.Java2
-
Sets the Swing look and feel to the system look and feel (Windows only).
- setT(int) - Method in class ij.ImagePlus
-
Sets the hyperstack frame position (one based).
- setT(ImageWindow, int) - Static method in class ij.plugin.frame.SyncWindows
-
- setTempCurrentImage(ImagePlus) - Static method in class ij.WindowManager
-
Makes the specified image temporarily the active
image for this thread.
- setTempCurrentImage(Thread, ImagePlus) - Static method in class ij.WindowManager
-
Sets a temporary image for the specified thread.
- setText(String) - Method in class ij.gui.MultiLineLabel
-
- setTextPanel(TextPanel) - Static method in class ij.IJ
-
TextWindow calls this method with a null argument when the "Results" window is closed.
- setThreads(int) - Static method in class ij.Prefs
-
Sets the number of threads (1-32) used by PlugInFilters to process stacks.
- setThreshold(double, double) - Static method in class ij.IJ
-
Sets the lower and upper threshold levels and displays the image
using red to highlight thresholded pixels.
- setThreshold(double, double, String) - Static method in class ij.IJ
-
Sets the lower and upper threshold levels and displays the image using
the specified displayMode ("Red", "Black & White", "Over/Under" or "No Update").
- setThreshold(ImagePlus, double, double) - Static method in class ij.IJ
-
Sets the lower and upper threshold levels of the specified image.
- setThreshold(ImagePlus, double, double, String) - Static method in class ij.IJ
-
Sets the lower and upper threshold levels of the specified image and updates the display using
the specified displayMode ("Red", "Black & White", "Over/Under" or "No Update").
- setThreshold(double, double, int) - Method in class ij.process.ByteProcessor
-
- setThreshold(double, double, int) - Method in class ij.process.FloatProcessor
-
- setThreshold(double, double, int) - Method in class ij.process.ImageProcessor
-
Sets the lower and upper threshold levels.
- setThreshold(double, double, int) - Method in class ij.process.ShortProcessor
-
- setTickLength(int) - Method in class ij.gui.Plot
-
Sets the length of the major tick in pixels.
- setTimeUnit(String) - Method in class ij.measure.Calibration
-
Sets the time unit (e.g.
- setTitle(String) - Method in class ij.ImagePlus
-
Sets the image name.
- setTitle(String) - Method in class ij.text.TextPanel
-
- setTool(String) - Method in class ij.gui.Toolbar
-
- setTool(int) - Method in class ij.gui.Toolbar
-
- setTool(int) - Static method in class ij.IJ
-
Switches to the specified tool, where id = Toolbar.RECTANGLE (0),
Toolbar.OVAL (1), etc.
- setTool(String) - Static method in class ij.IJ
-
Switches to the specified tool, where 'name' is "rect", "elliptical",
"brush", etc.
- setTransparentColor(Color) - Method in interface ij.process.Blitter
-
Sets the transparent color used in the COPY_TRANSPARENT
mode (default is Color.white).
- setTransparentColor(Color) - Method in class ij.process.ByteBlitter
-
- setTransparentColor(Color) - Method in class ij.process.ColorBlitter
-
- setTransparentColor(Color) - Method in class ij.process.FloatBlitter
-
- setTransparentColor(Color) - Method in class ij.process.ShortBlitter
-
- setTransparentIndex(int) - Static method in class ij.Prefs
-
Sets the transparent index (0-255), or set to -1 to disable transparency.
- setType(int) - Method in class ij.ImagePlus
-
- setUnderColor(int, int, int) - Static method in class ij.process.ImageProcessor
-
Set the lower Over/Under thresholding color.
- setUnit(String) - Method in class ij.measure.Calibration
-
Sets the default length unit (e.g.
- setUnitIncrement(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setUnsavedMeasurements(boolean) - Static method in class ij.plugin.filter.Analyzer
-
- setup() - Method in class ij.gui.GenericDialog
-
- setup() - Method in class ij.gui.HistogramWindow
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Analyzer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.AVI_Writer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.BackgroundSubtracter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Benchmark
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Binary
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Calibrator
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Convolver
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Duplicater
-
Deprecated.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.EDM
-
Prepare for processing; also called at the very end with argument 'final'
to show any newly created output image.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.FFTCustomFilter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.FFTFilter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Filler
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Filters
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.FractalBoxCounter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.GaussianBlur
-
Method to return types supported
- setup(String, ImagePlus) - Method in class ij.plugin.filter.ImageMath
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.ImageProperties
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Info
-
Deprecated.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.LineGraphAnalyzer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.LutApplier
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.LutViewer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.MaximumFinder
-
Method to return types supported
- setup(String, ImagePlus) - Method in class ij.plugin.filter.ParticleAnalyzer
-
- setup(String, ImagePlus) - Method in interface ij.plugin.filter.PlugInFilter
-
This method is called once when the filter is loaded.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Printer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.RankFilters
-
Setup of the PlugInFilter.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.RGBStackSplitter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.RoiWriter
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Rotator
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.SaltAndPepper
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.ScaleDialog
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Shadows
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.StackLabeler
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.ThresholdToSelection
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Transformer
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Translator
-
- setup(String, ImagePlus) - Method in class ij.plugin.filter.UnsharpMask
-
Method to return types supported
- setup(String, ImagePlus) - Method in class ij.plugin.filter.Writer
-
Deprecated.
- setup(String, ImagePlus) - Method in class ij.plugin.filter.XYWriter
-
- setup(int, ImagePlus) - Static method in class ij.Undo
-
- SETUP_UNDO - Static variable in interface ij.macro.MacroConstants
-
- setupDialog(ImagePlus, int) - Static method in class ij.IJ
-
Displays a "Process all images?" dialog.
- setupScroll(int, int) - Method in class ij.gui.ImageCanvas
-
- setupScroll(int, int) - Method in class ij.gui.PlotCanvas
-
overrides ImageCanvas.setupScroll; if plot is not frozen, scrolling modifies the plot data range
- setUseBicubic(boolean) - Static method in class ij.process.ImageProcessor
-
- setUseStackHistogram(boolean) - Method in class ij.plugin.ContrastEnhancer
-
- setValue(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setValue(String, int, double) - Method in class ij.measure.ResultsTable
-
Sets the value of the given column and row, where
where 0<=row<size().
- setValue(int, int, double) - Method in class ij.measure.ResultsTable
-
Sets the value of the given column and row, where
where 0<=column<=(lastRow+1 and 0<=row<=size().
- setValue(String, int, String) - Method in class ij.measure.ResultsTable
-
Sets the string value of the given column and row, where
where 0<=row<size().
- setValue(int, int, String) - Method in class ij.measure.ResultsTable
-
Sets the string value of the given column and row, where
where 0<=column<=(lastRow+1 and 0<=row<=size().
- setValue(double) - Method in class ij.process.ByteProcessor
-
Sets the default fill/draw value, where 0<=value<=255.
- setValue(double) - Method in class ij.process.ColorProcessor
-
Sets the default fill/draw value, where value is interpreted as an RGB int.
- setValue(double) - Method in class ij.process.FloatProcessor
-
Sets the default fill/draw value.
- setValue(double) - Method in class ij.process.ImageProcessor
-
Sets the default fill/draw value.
- setValue(double) - Method in class ij.process.ShortProcessor
-
Sets the default fill/draw value, where 0<=value<=65535).
- setValueUnit(String) - Method in class ij.measure.Calibration
-
Sets the value unit.
- setVariable(String, double) - Method in class ij.macro.Interpreter
-
- setVariable(String, String) - Method in class ij.macro.Interpreter
-
- setVirtual(boolean) - Method in class ij.plugin.AVI_Reader
-
Open as virtual stack?
- setVisibleAmount(int) - Method in class ij.gui.ScrollbarWithLabel
-
- setVoxel(int, int, int, double) - Method in class ij.ImageStack
-
- setVoxels(int, int, int, int, int, int, float[]) - Method in class ij.ImageStack
-
Experimental
- setVoxels(int, int, int, int, int, int, float[], int) - Method in class ij.ImageStack
-
Experimental
- setWeightingFactors(double, double, double) - Static method in class ij.process.ColorProcessor
-
Sets the weighting factors used by getPixelValue(), getHistogram()
and convertToByte() to do color conversions.
- setWidth(int) - Static method in class ij.gui.Line
-
- setWildcardChars(char, char) - Method in class ij.util.WildcardMatch
-
Sets new characters to be used as wildcard characters, overriding the
the default of '?' for any single character match and '*' for any
amount of characters, including 0 characters.
- setWindow(ImageWindow) - Method in class ij.ImagePlus
-
This method should only be called from an ImageWindow.
- setWindow(Window) - Static method in class ij.WindowManager
-
The specified Window becomes the front window.
- setWindow(Frame) - Static method in class ij.WindowManager
-
The specified frame becomes the front window, the one returnd by getFrontWindow().
- setXLabelFont(Font) - Method in class ij.gui.Plot
-
Sets the xLabelFont; must not be mull.
- setXMinorTicks(boolean) - Method in class ij.gui.Plot
-
Sets whether to show minor ticks on the x axis (if linear).
- setXTicks(boolean) - Method in class ij.gui.Plot
-
Sets whether to show major ticks at the x axis.
- setXUnit(String) - Method in class ij.measure.Calibration
-
Sets the X length unit.
- setXYLabels(String, String) - Method in class ij.gui.Plot
-
Sets the labels of the x and y axes.
- setYLabelFont(Font) - Method in class ij.gui.Plot
-
Sets the yLabelFont; must not be null.
- setYMinorTicks(boolean) - Method in class ij.gui.Plot
-
Sets whether to show minor ticks on the y axis (if linear).
- setYTicks(boolean) - Method in class ij.gui.Plot
-
Sets whether to show major ticks at the y axis.
- setYUnit(String) - Method in class ij.measure.Calibration
-
Sets the Y length unit.
- setZ(int) - Method in class ij.ImagePlus
-
Sets the hyperstack slice position (one based).
- setZ(ImageWindow, int) - Static method in class ij.plugin.frame.SyncWindows
-
- setZeroTransparent(boolean) - Method in class ij.gui.ImageRoi
-
- setZUnit(String) - Method in class ij.measure.Calibration
-
Sets the Z length unit.
- Shadows - Class in ij.plugin.filter
-
Implements the commands in the Process/Shadows submenu.
- Shadows() - Constructor for class ij.plugin.filter.Shadows
-
- SHAPE_DESCRIPTORS - Static variable in interface ij.measure.Measurements
-
- SHAPE_ROI_SIZE - Static variable in class ij.io.RoiDecoder
-
- ShapeRoi - Class in ij.gui
-
A subclass of ij.gui.Roi (2D Regions Of Interest) implemented in terms of java.awt.Shape.
- ShapeRoi(Roi) - Constructor for class ij.gui.ShapeRoi
-
Constructs a ShapeRoi from an Roi.
- ShapeRoi(Shape) - Constructor for class ij.gui.ShapeRoi
-
Constructs a ShapeRoi from a Shape.
- ShapeRoi(int, int, Shape) - Constructor for class ij.gui.ShapeRoi
-
Constructs a ShapeRoi from a Shape.
- ShapeRoi(float[]) - Constructor for class ij.gui.ShapeRoi
-
Constructs a ShapeRoi from an array of variable length path segments.
- shapeToRoi() - Method in class ij.gui.ShapeRoi
-
Attempts to convert this ShapeRoi into a single non-composite Roi.
- sharpen() - Method in class ij.process.ImageProcessor
-
Sharpens the image or ROI using a 3x3 convolution kernel.
- sharpenFloat(FloatProcessor, double, float) - Method in class ij.plugin.filter.UnsharpMask
-
Unsharp Mask filtering of a float image.
- SHIFT_LEFT - Static variable in interface ij.macro.MacroConstants
-
- SHIFT_RIGHT - Static variable in interface ij.macro.MacroConstants
-
- shiftKeyDown() - Static method in class ij.IJ
-
Returns true if the shift key is down.
- SHORT - Static variable in class ij.plugin.filter.EDM
-
Output type: new 16-bit image
- ShortBlitter - Class in ij.process
-
This class does bit blitting of 16-bit images.
- ShortBlitter(ShortProcessor) - Constructor for class ij.process.ShortBlitter
-
Constructs a ShortBlitter from a ShortProcessor.
- SHORTCUT_IN_USE - Static variable in class ij.Menus
-
- shortcutInUse(String) - Static method in class ij.Menus
-
Returns 'true' if this keyboard shortcut is in use.
- SHORTCUTS_MENU - Static variable in class ij.Menus
-
- ShortProcessor - Class in ij.process
-
ShortProcessors contain a 16-bit unsigned image
and methods that operate on that image.
- ShortProcessor(int, int, short[], ColorModel) - Constructor for class ij.process.ShortProcessor
-
Creates a new ShortProcessor using the specified pixel array and ColorModel.
- ShortProcessor(int, int) - Constructor for class ij.process.ShortProcessor
-
Creates a blank ShortProcessor using the default grayscale LUT that
displays zero as black.
- ShortProcessor(BufferedImage) - Constructor for class ij.process.ShortProcessor
-
Creates a ShortProcessor from a TYPE_USHORT_GRAY BufferedImage.
- ShortProcessor(int, int, short[], ColorModel, boolean) - Constructor for class ij.process.ShortProcessor
-
- ShortProcessor(int, int, boolean) - Constructor for class ij.process.ShortProcessor
-
Obsolete.
- ShortStatistics - Class in ij.process
-
16-bit image statistics, including histogram.
- ShortStatistics(ImageProcessor) - Constructor for class ij.process.ShortStatistics
-
Construct an ImageStatistics object from a ShortProcessor
using the standard measurement options (area, mean,
mode, min and max).
- ShortStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ShortStatistics
-
Constructs a ShortStatistics object from a ShortProcessor using
the specified measurement options.
- show() - Method in class ij.gui.Plot
-
Displays the plot in a PlotWindow.
- show(double) - Method in class ij.gui.ProgressBar
-
Updates the progress bar, where abs(progress) should run from 0 to 1.
- show(double, boolean) - Method in class ij.gui.ProgressBar
-
Updates the progress bar, where abs(progress) should run from 0 to 1.
- show(int, int) - Method in class ij.gui.ProgressBar
-
Updates the progress bar, where the length of the bar is set to
((abs(currentIndex)+1)/abs(finalIndex) of the maximum bar
length.
- show() - Method in class ij.gui.WaitForUserDialog
-
- show() - Method in class ij.ImagePlus
-
Opens a window to display this image and clears the status bar.
- show(String) - Method in class ij.ImagePlus
-
Opens a window to display this image and displays
'statusMessage' in the status bar.
- show(String) - Method in class ij.measure.ResultsTable
-
Displays the contents of this ResultsTable in a window with
the specified title, or updates an existing results window.
- SHOW_ALL_COLOR - Static variable in class ij.Prefs
-
- SHOW_LABELS - Static variable in class ij.io.RoiDecoder
-
- SHOW_MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display image containing binary masks of measured particles.
- SHOW_MESSAGE - Static variable in interface ij.macro.MacroConstants
-
- SHOW_MESSAGE_WITH_CANCEL - Static variable in interface ij.macro.MacroConstants
-
- SHOW_NONE - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Do not display particle outline image.
- SHOW_OUTLINES - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display image containing outlines of measured particles.
- SHOW_OVERLAY_MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display filled particle as an overlay.
- SHOW_OVERLAY_OUTLINES - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display particle outlines as an overlay.
- SHOW_PROGRESS - Static variable in interface ij.macro.MacroConstants
-
- SHOW_PROGRESS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display a progress bar.
- SHOW_RESULTS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display results in the ImageJ console.
- SHOW_ROI_MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Display image containing grayscales masks that identify measured particles.
- SHOW_STATUS - Static variable in interface ij.macro.MacroConstants
-
- SHOW_SUMMARY - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
Obsolete, replaced by DISPLAY_SUMMARY
- SHOW_TEXT - Static variable in interface ij.macro.MacroConstants
-
- showAllPoints - Static variable in class ij.Prefs
-
Ignore stack positions when displaying points.
- showAllSliceOnly - Static variable in class ij.Prefs
-
Only show ROIs associated with current slice in Roi Manager "Show All" mode.
- showArrayInspector(int) - Method in class ij.macro.Interpreter
-
Shows array elements after clicking an array variable in Debug
window
N.
- showCode(String, String) - Static method in class ij.gui.Toolbar
-
- showCompositeAdvisory(ImagePlus, String) - Static method in class ij.gui.GUI
-
- showDialog() - Method in class ij.gui.GenericDialog
-
Displays this dialog box.
- showDialog() - Method in class ij.gui.NonBlockingGenericDialog
-
- showDialog(Frame) - Method in class ij.gui.PlotContentsDialog
-
Shows the dialog, with a given parent Frame (may be null)
- showDialog(Frame) - Method in class ij.gui.PlotDialog
-
Asks the user for axis scaling; then replot with new scale on the same ImageProcessor.
- showDialog() - Method in class ij.gui.RoiProperties
-
Displays the dialog box and returns 'false' if the user cancels it.
- showDialog() - Method in class ij.plugin.Compiler
-
- showDialog() - Method in class ij.plugin.FFTMath
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.BackgroundSubtracter
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.Binary
-
- showDialog(ImagePlus) - Method in class ij.plugin.filter.Calibrator
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.Convolver
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.EDM
-
Called by the PlugInFilterRunner after setup.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in interface ij.plugin.filter.ExtendedPlugInFilter
-
This method is called after setup(arg, imp) unless the
DONE flag has been set.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.GaussianBlur
-
Ask the user for the parameters
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.ImageMath
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.MaximumFinder
-
- showDialog() - Method in class ij.plugin.filter.ParticleAnalyzer
-
Displays a modal options dialog.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.RankFilters
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.Rotator
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.StackLabeler
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.Translator
-
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class ij.plugin.filter.UnsharpMask
-
Ask the user for the parameters
- showDialog() - Method in class ij.plugin.NewPlugin
-
- showDialog() - Method in class ij.plugin.OverlayLabels
-
- showDialog(ImagePlus, double) - Method in class ij.plugin.RoiEnlarger
-
- showDialog(double) - Method in class ij.plugin.RoiRotator
-
- showDialog() - Method in class ij.plugin.RoiScaler
-
- showDialog(ImageStack) - Method in class ij.plugin.StackReducer
-
- showHistogram(ImagePlus, int) - Method in class ij.gui.HistogramWindow
-
Draws the histogram using the specified title and number of bins.
- showHistogram(ImagePlus, int, double, double) - Method in class ij.gui.HistogramWindow
-
Draws the histogram using the specified title, number of bins and histogram range.
- showHistogram(ImagePlus, ImageStatistics) - Method in class ij.gui.HistogramWindow
-
Draws the histogram using the specified title and ImageStatistics.
- showImageDialog(String) - Method in class ij.gui.RoiProperties
-
- showList() - Method in class ij.gui.HistogramWindow
-
- showList() - Static method in class ij.WindowManager
-
- showLogWindow() - Method in class ij.plugin.frame.Editor
-
- showMacroFunctions() - Method in class ij.plugin.frame.Editor
-
- showMessage(String) - Static method in class ij.IJ
-
Displays a message in a dialog box titled "Message".
- showMessage(String, String) - Static method in class ij.IJ
-
Displays a message in a dialog box with the specified title.
- showMessageWithCancel(String, String) - Static method in class ij.IJ
-
Displays a message in a dialog box with the specified title.
- showOptionsDialog() - Method in class ij.plugin.tool.ArrowTool
-
- showOptionsDialog() - Method in class ij.plugin.tool.BrushTool
-
- showOptionsDialog() - Method in class ij.plugin.tool.OverlayBrushTool
-
- showOptionsDialog() - Method in class ij.plugin.tool.PixelInspectionTool
-
- showOptionsDialog() - Method in class ij.plugin.tool.PlugInTool
-
- showOptionsDialog() - Method in class ij.plugin.tool.RoiRotationTool
-
- showPopupMenu(MouseEvent, Toolbar) - Method in class ij.plugin.tool.PlugInTool
-
- showProgress(double) - Static method in class ij.IJ
-
Updates the progress bar, where 0<=progress<=1.0.
- showProgress(int, int) - Static method in class ij.IJ
-
Updates the progress bar, where the length of the bar is set to
(currentValue+1)/finalValue of the maximum bar length.
- showProgress(boolean) - Method in class ij.plugin.filter.GaussianBlur
-
- showProgress - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- showProgress(double) - Method in class ij.process.ImageProcessor
-
- showResults - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- showRowIndexes(boolean) - Method in class ij.measure.ResultsTable
-
- showRowNumbers(boolean) - Method in class ij.measure.ResultsTable
-
- showSizeDistribution - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- showSlice(int) - Method in class ij.gui.StackWindow
-
Displays the specified slice and updates the stack scrollbar.
- showStatus() - Method in class ij.gui.EllipseRoi
-
- showStatus() - Method in class ij.gui.Line
-
- showStatus() - Method in class ij.gui.Roi
-
- showStatus() - Method in class ij.gui.RotatedRectRoi
-
- showStatus(String) - Static method in class ij.IJ
-
Displays a message in the ImageJ status bar.
- showStatus(boolean) - Method in class ij.plugin.filter.ThresholdToSelection
-
Determines whether to show status messages and a progress bar
- showTime(ImagePlus, long, String) - Static method in class ij.IJ
-
- showTime(ImagePlus, long, String, int) - Static method in class ij.IJ
-
- shrink(ImagePlus, int, int, int, int) - Method in class ij.plugin.Binner
-
- shrink(ImageProcessor, int, int, int) - Method in class ij.plugin.Binner
-
- shrinkHyperstackZ(ImagePlus, int) - Method in class ij.plugin.Binner
-
- shuffle(ImagePlus, int) - Method in class ij.plugin.HyperStackConverter
-
Changes the dimension order of a 4D or 5D stack from
the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to
the XYCZT order used by ImageJ.
- SimpleCommands - Class in ij.plugin
-
This plugin implements the Plugins/Utilities/Unlock, Image/Rename
and Plugins/Utilities/Search commands.
- SimpleCommands() - Constructor for class ij.plugin.SimpleCommands
-
- SIN - Static variable in interface ij.macro.MacroConstants
-
- SINGLE_POINTS - Static variable in class ij.plugin.filter.MaximumFinder
-
Output type single points
- sixteenBitRanges - Static variable in class ij.plugin.frame.ContrastAdjuster
-
- size() - Method in class ij.gui.Line
-
Returns the number of points in this selection; equivalent to getPolygon().npoints.
- size() - Method in class ij.gui.OvalRoi
-
Returns the number of corner points in the mask of this selection; equivalent to getPolygon().npoints.
- size() - Method in class ij.gui.Overlay
-
Returns the number of ROIs in this Overlay.
- size() - Method in class ij.gui.PolygonRoi
-
Returns the number of points in this selection; equivalent to getPolygon().npoints.
- size() - Method in class ij.gui.Roi
-
Returns the number of points in this selection; equivalent to getFloatPolygon().npoints.
- size() - Method in class ij.gui.ShapeRoi
-
Retuns the number of vertices, of this shape as approximated by straight lines.
- size() - Method in class ij.ImageStack
-
Returns the number of slices in this stack.
- SIZE - Static variable in class ij.io.RoiDecoder
-
- size() - Method in class ij.measure.ResultsTable
-
Returns the size of this ResultsTable.
- size() - Method in class ij.util.FloatArray
-
Returns the number of elements in the array.
- SIZE_KEY - Static variable in class ij.gui.Arrow
-
- sizes - Static variable in class ij.gui.PointRoi
-
- skeletonize() - Method in class ij.process.BinaryProcessor
-
Uses a lookup table to repeatably removes pixels from the
edges of objects in a binary image, reducing them to single
pixel wide skeletons.
- skeletonize() - Method in class ij.process.ByteProcessor
-
- SKEWNESS - Static variable in interface ij.measure.Measurements
-
- SKEWNESS - Static variable in class ij.measure.ResultsTable
-
- skewness - Variable in class ij.process.ImageStatistics
-
- skipRawDialog - Static variable in class ij.Prefs
-
Do not display dialog when opening .raw files
- slice - Variable in class ij.gui.StackWindow
-
- SLICE - Static variable in interface ij.measure.Measurements
-
- SLICE - Static variable in class ij.measure.ResultsTable
-
- slice - Variable in class ij.plugin.filter.ParticleAnalyzer
-
- sliceLabels - Variable in class ij.io.FileInfo
-
- Slicer - Class in ij.plugin
-
Implements the Image/Stacks/Reslice command.
- Slicer() - Constructor for class ij.plugin.Slicer
-
- sliceSelector - Variable in class ij.gui.StackWindow
-
- slider - Variable in class ij.gui.GenericDialog
-
- smooth() - Method in class ij.process.ImageProcessor
-
Replaces each pixel with the 3x3 neighborhood mean.
- smoothWand - Static variable in class ij.Prefs
-
Wand tool "Smooth if thresholded" option
- SNAPSHOT - Static variable in interface ij.macro.MacroConstants
-
- SNAPSHOT - Static variable in interface ij.plugin.filter.PlugInFilter
-
Set this flag if the filter requires a snapshot (copy of the pixels array).
- snapshot() - Method in class ij.process.ByteProcessor
-
Make a snapshot of the current image.
- snapshot() - Method in class ij.process.ColorProcessor
-
- snapshot() - Method in class ij.process.FloatProcessor
-
- snapshot() - Method in class ij.process.ImageProcessor
-
Makes a copy of this image's pixel data that can be
later restored using reset() or reset(mask).
- snapshot() - Method in class ij.process.ShortProcessor
-
- snapshotHeight - Variable in class ij.process.ImageProcessor
-
- snapshotPixels - Variable in class ij.process.ByteProcessor
-
- snapshotPixels - Variable in class ij.process.ColorProcessor
-
- snapshotWidth - Variable in class ij.process.ImageProcessor
-
- SOFTWARE - Static variable in class ij.io.TiffDecoder
-
- SOLIDITY - Static variable in class ij.measure.ResultsTable
-
- sort(String) - Method in class ij.measure.ResultsTable
-
Sorts this table on the specified column, with string support.
- sort() - Method in class ij.util.ArrayUtil
-
- sort(ImageStack) - Static method in class ij.util.DicomTools
-
Sorts a DICOM stack by image number.
- sort(String[]) - Static method in class ij.util.StringSorter
-
Sorts the array.
- sortByMetaData(boolean) - Method in class ij.plugin.FolderOpener
-
- sortDicom(String[], String[], int) - Method in class ij.VirtualStack
-
- sortedTypes - Static variable in class ij.measure.CurveFitter
-
Nicer sequence of the built-in function types
- sortFileList(String[]) - Method in class ij.plugin.FolderOpener
-
Sorts file names containing numerical components.
- sortFileNames(boolean) - Method in class ij.plugin.FolderOpener
-
- sortNumerically(String[]) - Static method in class ij.util.StringSorter
-
Sorts file names containing numerical components.
- source - Variable in class ij.process.ImageProcessor
-
- south(ImageProcessor) - Method in class ij.plugin.filter.Shadows
-
- southeast(ImageProcessor) - Method in class ij.plugin.filter.Shadows
-
- southwest(ImageProcessor) - Method in class ij.plugin.filter.Shadows
-
- spaceBarDown() - Static method in class ij.IJ
-
Returns true if the space bar is down.
- SPARE1 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE2 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE3 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE4 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE5 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE6 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE7 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE8 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SPARE9 - Static variable in class ij.gui.Toolbar
-
Obsolete public constants
- SpecifyROI - Class in ij.plugin
-
This plugin implements the Edit/Selection/Specify command.
- SpecifyROI() - Constructor for class ij.plugin.SpecifyROI
-
- SPLINE_FIT - Static variable in class ij.io.RoiDecoder
-
- splineFitLines - Static variable in class ij.Prefs
-
Automatically spline fit line selections
- SplineFitter - Class in ij.measure
-
This class fits a spline function to a set of points.
- SplineFitter(int[], int[], int) - Constructor for class ij.measure.SplineFitter
-
- SplineFitter(float[], float[], int, boolean) - Constructor for class ij.measure.SplineFitter
-
For closed curves: the first and last y value should be identical;
internally, a periodic continuation with a few will be used at both
ends
- SplineFitter(float[], float[], int) - Constructor for class ij.measure.SplineFitter
-
- splinePoints - Variable in class ij.gui.PolygonRoi
-
- SPLIT - Static variable in interface ij.macro.MacroConstants
-
- split(ImagePlus) - Static method in class ij.plugin.ChannelSplitter
-
Splits the specified image into separate channels.
- split(ImagePlus) - Method in class ij.plugin.filter.RGBStackSplitter
-
Deprecated; replaced by ij.plugin.ChannelSplitter.
- split(ImageStack, boolean) - Method in class ij.plugin.filter.RGBStackSplitter
-
Deprecated; replaced by ChannelSplitter.splitRGB().
- split(String) - Static method in class ij.util.Tools
-
Splits a string into substrings using the default delimiter set,
which is " \t\n\r" (space, tab, newline and carriage-return).
- split(String, String) - Static method in class ij.util.Tools
-
Splits a string into substring using the characters
contained in the second argument as the delimiter set.
- splitRGB(ImageStack, boolean) - Static method in class ij.plugin.ChannelSplitter
-
Splits the specified RGB stack into three 8-bit grayscale stacks.
- sqr() - Method in class ij.process.FloatProcessor
-
- sqr() - Method in class ij.process.ImageProcessor
-
Performs a square transform on the image or ROI.
- sqr() - Method in class ij.process.ShortProcessor
-
- SQRT - Static variable in interface ij.macro.MacroConstants
-
- sqrt() - Method in class ij.process.FloatProcessor
-
- sqrt() - Method in class ij.process.ImageProcessor
-
Performs a square root transform on the image or ROI.
- sqrt() - Method in class ij.process.ShortProcessor
-
- SQRT2 - Static variable in class ij.plugin.filter.EDM
-
In old make16bitEDM this pixel value corresponds to a pixel distance of sqrt(2)
- SQRT5 - Static variable in class ij.plugin.filter.EDM
-
In old make16bitEDM this pixel value corresponds to a pixel distance of sqrt(5)
- srcEnd - Variable in class ij.process.DownsizeTable
-
index of the last point of the source data that should be accessed
- srcRect - Variable in class ij.gui.ImageCanvas
-
- srcStart - Variable in class ij.process.DownsizeTable
-
index of the first point of the source data that should be accessed
- STACK - Static variable in interface ij.macro.MacroConstants
-
- STACK_POSITION - Static variable in interface ij.measure.Measurements
-
- STACK_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
-
Set this flag if the filter requires a stack.
- Stack_Statistics - Class in ij.plugin
-
This plugin implements the Image/Stacks/Statistics command.
- Stack_Statistics() - Constructor for class ij.plugin.Stack_Statistics
-
- StackCombiner - Class in ij.plugin
-
This plugin implements the Image/Stacks/Combine command.
- StackCombiner() - Constructor for class ij.plugin.StackCombiner
-
- StackConverter - Class in ij.process
-
This class does stack type conversions.
- StackConverter(ImagePlus) - Constructor for class ij.process.StackConverter
-
- StackEditor - Class in ij.plugin
-
Implements the AddSlice, DeleteSlice and "Stack to Images" commands.
- StackEditor() - Constructor for class ij.plugin.StackEditor
-
- StackInserter - Class in ij.plugin
-
This plugin, which implements the Image/Stacks/Tools/Insert
command, inserts an image or stack into another image or stack.
- StackInserter() - Constructor for class ij.plugin.StackInserter
-
- StackLabeler - Class in ij.plugin.filter
-
This plugin implements the Image/Stacks/Label command.
- StackLabeler() - Constructor for class ij.plugin.filter.StackLabeler
-
- StackMaker - Class in ij.plugin
-
The plugin implements the Image/Stacks/Tools/Montage to Stack command.
- StackMaker() - Constructor for class ij.plugin.StackMaker
-
- StackPlotter - Class in ij.plugin
-
- StackPlotter() - Constructor for class ij.plugin.StackPlotter
-
- StackProcessor - Class in ij.process
-
This class processes stacks.
- StackProcessor(ImageStack) - Constructor for class ij.process.StackProcessor
-
Constructs a StackProcessor from a stack.
- StackProcessor(ImageStack, ImageProcessor) - Constructor for class ij.process.StackProcessor
-
Constructs a StackProcessor from a stack.
- StackReducer - Class in ij.plugin
-
This plugin implements the Image/Stacks/Tools/Reduce command.
- StackReducer() - Constructor for class ij.plugin.StackReducer
-
- StackReverser - Class in ij.plugin
-
This plugin implements the Image/Transform/Flip Z and
Image/Stacks/Tools/Reverse commands.
- StackReverser() - Constructor for class ij.plugin.StackReverser
-
- stackStatistics - Variable in class ij.process.ImageStatistics
-
Used by HistogramWindow
- StackStatistics - Class in ij.process
-
Statistics, including the histogram, of a stack.
- StackStatistics(ImagePlus) - Constructor for class ij.process.StackStatistics
-
Creates a StackStatistics object from a stack, using 256
histogram bins and the entire stack pixel value range.
- StackStatistics(ImagePlus, int, double, double) - Constructor for class ij.process.StackStatistics
-
Creates a StackStatistics object from a stack, using the specified
histogram bin count and x-axis range (pixel value tange).
- StackWindow - Class in ij.gui
-
This class is an extended ImageWindow that displays stacks and hyperstacks.
- StackWindow(ImagePlus) - Constructor for class ij.gui.StackWindow
-
- StackWindow(ImagePlus, ImageCanvas) - Constructor for class ij.gui.StackWindow
-
- StackWriter - Class in ij.plugin
-
This plugin, which saves the images in a stack as separate files,
implements the File/Save As/Image Sequence command.
- StackWriter() - Constructor for class ij.plugin.StackWriter
-
- STANDALONE - Static variable in class ij.ImageJ
-
Run as normal application.
- startAndJoin(Thread[]) - Static method in class ij.util.ThreadUtil
-
Start all given threads and wait on each of them until all are done.
- startPaste(ImagePlus) - Method in class ij.gui.Roi
-
- STARTS_WITH - Static variable in interface ij.macro.MacroConstants
-
- startServer() - Static method in class ij.OtherInstance
-
- startTiming() - Method in class ij.ImagePlus
-
Calls System.currentTimeMillis() to save the current
time so it can be retrieved later using getStartTime()
to calculate the elapsed time of an operation.
- Startup - Class in ij.plugin
-
This plugin implements the Edit/Options/Startup command.
- Startup() - Constructor for class ij.plugin.Startup
-
- StartupRunner - Class in ij.macro
-
Runs the RunAtStartup (created by Edit/Options/Startup) and AutoRun (in StartupMacros) macros.
- StartupRunner() - Constructor for class ij.macro.StartupRunner
-
- startxd - Variable in class ij.gui.Line
-
- startyd - Variable in class ij.gui.Line
-
- staticShowChoice - Static variable in class ij.plugin.filter.ParticleAnalyzer
-
- stats - Variable in class ij.gui.HistogramWindow
-
- STATUS_STRING - Static variable in class ij.measure.Minimizer
-
Strings describing the status codes
- STD_DEV - Static variable in interface ij.measure.Measurements
-
- STD_DEV - Static variable in class ij.measure.ResultsTable
-
- stdDev - Variable in class ij.process.ImageStatistics
-
- STEP - Static variable in interface ij.macro.Debugger
-
- stop() - Static method in class ij.plugin.Orthogonal_Views
-
- str - Variable in class ij.macro.Symbol
-
- STRAIGHT_LINE - Static variable in class ij.measure.Calibration
-
- STRAIGHT_LINE - Static variable in class ij.measure.CurveFitter
-
Constants for the built-in fit functions
- straighten(ImagePlus, Roi, int) - Method in class ij.plugin.Straightener
-
- Straightener - Class in ij.plugin
-
This plugin implements the Edit/Selection/Straighten command.
- Straightener() - Constructor for class ij.plugin.Straightener
-
- straightenLine(ImagePlus, int) - Method in class ij.plugin.Straightener
-
- straightenStack(ImagePlus, Roi, int) - Method in class ij.plugin.Straightener
-
- stretchHistogram(ImagePlus, double) - Method in class ij.plugin.ContrastEnhancer
-
- stretchHistogram(ImageProcessor, double) - Method in class ij.plugin.ContrastEnhancer
-
- stretchHistogram(ImageProcessor, double, ImageStatistics) - Method in class ij.plugin.ContrastEnhancer
-
- STRING - Static variable in interface ij.macro.MacroConstants
-
- STRING_CONSTANT - Static variable in interface ij.macro.MacroConstants
-
- STRING_FUNCTION - Static variable in interface ij.macro.MacroConstants
-
- stringField - Variable in class ij.gui.GenericDialog
-
- stringFunctionIDs - Static variable in interface ij.macro.MacroConstants
-
- stringFunctions - Static variable in interface ij.macro.MacroConstants
-
- StringSorter - Class in ij.util
-
A simple QuickSort for String arrays.
- StringSorter() - Constructor for class ij.util.StringSorter
-
- STRIP_BYTE_COUNT - Static variable in class ij.io.TiffDecoder
-
- STRIP_OFFSETS - Static variable in class ij.io.TiffDecoder
-
- stripLengths - Variable in class ij.io.FileInfo
-
- stripOffsets - Variable in class ij.io.FileInfo
-
- stroke - Variable in class ij.gui.Roi
-
- STROKE_COLOR - Static variable in class ij.io.RoiDecoder
-
- STROKE_WIDTH - Static variable in class ij.io.RoiDecoder
-
- strokeColor - Variable in class ij.gui.Roi
-
- STYLE - Static variable in class ij.gui.PlotContentsDialog
-
Types of dialog (ERROR suppresses the dialog after an invalid call of a constructor)
- STYLE_KEY - Static variable in class ij.gui.Arrow
-
- styles - Static variable in class ij.gui.Arrow
-
- SUB_PIXEL_RESOLUTION - Static variable in class ij.io.RoiDecoder
-
- SubHyperstackMaker - Class in ij.plugin
-
This plugin is used by the Image/Stacks/Tools/Make Substack
command to create substacks of hyperstacks.
- SubHyperstackMaker() - Constructor for class ij.plugin.SubHyperstackMaker
-
- subPixelResolution() - Method in class ij.gui.EllipseRoi
-
Always returns true.
- subPixelResolution() - Method in class ij.gui.Line
-
Always returns true.
- subPixelResolution() - Method in class ij.gui.PointRoi
-
Always returns true.
- subPixelResolution() - Method in class ij.gui.PolygonRoi
-
- subPixelResolution() - Method in class ij.gui.Roi
-
Returns true if this is a slection that supports sub-pixel resolution.
- subPixelResolution() - Method in class ij.gui.RotatedRectRoi
-
Always returns true.
- subPixelResolution - Static variable in class ij.Prefs
-
Use sub-pixel resolution with line selections
- SubstackMaker - Class in ij.plugin
-
This plugin implements the Image/Stacks/Tools/Make Substack command.
- SubstackMaker() - Constructor for class ij.plugin.SubstackMaker
-
- SUBSTRING - Static variable in interface ij.macro.MacroConstants
-
- SUBTRACT - Static variable in interface ij.process.Blitter
-
dst=dst-src
- subtract(double) - Method in class ij.process.ImageProcessor
-
Subtracts 'value' from each pixel in the image or ROI.
- subtractBackround(ImageProcessor, int) - Method in class ij.plugin.filter.BackgroundSubtracter
-
Depracated.
- subtractPoints(Roi) - Method in class ij.gui.PointRoi
-
Returns the points of this Roi that are not contained in the specified area ROI.
- subtractRGBBackround(ColorProcessor, int) - Method in class ij.plugin.filter.BackgroundSubtracter
-
Depracated.
- SUBTYPE - Static variable in class ij.io.RoiDecoder
-
- SUCCESS - Static variable in class ij.measure.Minimizer
-
Status returned: successful completion
- SUM - Static variable in class ij.plugin.Binner
-
- SUM_METHOD - Static variable in class ij.plugin.ZProjector
-
- summarize() - Method in class ij.plugin.filter.Analyzer
-
- supportMacroUndo - Static variable in class ij.Prefs
-
Support TRANSFORM Undo in macros
- SUPPORTS_MASKING - Static variable in interface ij.plugin.filter.PlugInFilter
-
Set this flag if the filter wants ImageJ, for non-rectangular
ROIs, to restore that part of the image that's inside the bounding
rectangle but outside of the ROI.
- suppressPluginNotFoundError() - Static method in class ij.IJ
-
Temporarily suppress "plugin not found" errors.
- SurfacePlotter - Class in ij.plugin
-
- SurfacePlotter() - Constructor for class ij.plugin.SurfacePlotter
-
- swapPixelArrays() - Method in class ij.process.ByteProcessor
-
Swaps the pixel and snapshot (undo) arrays.
- swapPixelArrays() - Method in class ij.process.ColorProcessor
-
Swaps the pixel and snapshot (undo) arrays.
- swapPixelArrays() - Method in class ij.process.FloatProcessor
-
Swaps the pixel and snapshot (undo) arrays.
- swapPixelArrays() - Method in class ij.process.ImageProcessor
-
Swaps the pixel and snapshot (undo) buffers.
- swapPixelArrays() - Method in class ij.process.ShortProcessor
-
Swaps the pixel and snapshot (undo) arrays.
- swapQuadrants(ImageProcessor) - Method in class ij.process.FHT
-
Swap quadrants 1 and 3 and 2 and 4 of the specified ImageProcessor
so the power spectrum origin is at the center of the image.
- swapQuadrants() - Method in class ij.process.FHT
-
Swap quadrants 1 and 3 and 2 and 4 of the image
contained in this FHT.
- Symbol - Class in ij.macro
-
Objects of this class are used as entries in the macro language symbol table.
- SyncWindows - Class in ij.plugin.frame
-
This class "synchronizes" mouse input in multiple windows.
- SyncWindows() - Constructor for class ij.plugin.frame.SyncWindows
-
Create window sync frame.
- SyncWindows(String) - Constructor for class ij.plugin.frame.SyncWindows
-
T
- T_POSITION - Static variable in class ij.io.RoiDecoder
-
- TABLE - Static variable in class ij.io.Opener
-
- TABLE - Static variable in interface ij.macro.MacroConstants
-
- TABLE - Static variable in class ij.plugin.NewPlugin
-
- TABLE_FULL - Static variable in class ij.measure.ResultsTable
-
- tableWindowExists() - Static method in class ij.gui.PlotContentsDialog
-
Returns whether there is at least one table that can be used for "Add from Table"
- TAN - Static variable in interface ij.macro.MacroConstants
-
- TCZ - Static variable in class ij.plugin.HyperStackConverter
-
- TEMPLATE - Static variable in class ij.plugin.NewPlugin
-
- temporarilyHide() - Method in class ij.gui.Roi
-
Deprecated
- TEXT - Static variable in class ij.gui.Toolbar
-
- TEXT - Static variable in class ij.io.Opener
-
- TEXT - Static variable in class ij.io.RoiDecoder
-
- Text - Class in ij.plugin
-
This plugin implements the Edit/Options/Fonts command and
the dialog displayed when you double click on the text tool.
- Text() - Constructor for class ij.plugin.Text
-
- TEXT_FILE - Static variable in class ij.plugin.NewPlugin
-
- textArea1 - Variable in class ij.gui.GenericDialog
-
- textArea2 - Variable in class ij.gui.GenericDialog
-
- TextEncoder - Class in ij.io
-
Saves an image described by an ImageProcessor object as a tab-delimited text file.
- TextEncoder(ImageProcessor, Calibration, int) - Constructor for class ij.io.TextEncoder
-
Constructs a TextEncoder from an ImageProcessor and optional Calibration.
- TextFileReader - Class in ij.plugin
-
This plugin displays the contents of a text file in a window.
- TextFileReader() - Constructor for class ij.plugin.TextFileReader
-
- TextPanel - Class in ij.text
-
This is an unlimited size text panel with tab-delimited,
labeled and resizable columns.
- TextPanel() - Constructor for class ij.text.TextPanel
-
Constructs a new TextPanel.
- TextPanel(String) - Constructor for class ij.text.TextPanel
-
Constructs a new TextPanel.
- TextReader - Class in ij.plugin
-
This plugin opens a tab or comma delimeted text file as an image.
- TextReader() - Constructor for class ij.plugin.TextReader
-
- TextRoi - Class in ij.gui
-
This class is a rectangular ROI containing text.
- TextRoi(int, int, String) - Constructor for class ij.gui.TextRoi
-
Creates a TextRoi.
- TextRoi(String, double, double, Font) - Constructor for class ij.gui.TextRoi
-
Use this constructor as a drop-in replacement for ImageProcessor.drawString().
- TextRoi(double, double, String) - Constructor for class ij.gui.TextRoi
-
Creates a TextRoi using sub-pixel coordinates.
- TextRoi(int, int, String, Font) - Constructor for class ij.gui.TextRoi
-
Creates a TextRoi using the specified location and Font.
- TextRoi(double, double, String, Font) - Constructor for class ij.gui.TextRoi
-
Creates a TextRoi using the specified sub-pixel location and Font.
- TextRoi(double, double, double, double, String, Font) - Constructor for class ij.gui.TextRoi
-
Creates a TextRoi using the specified sub-pixel location, size and Font.
- TextRoi(int, int, String, Font, Color) - Constructor for class ij.gui.TextRoi
-
Deprecated.
- TextRoi(int, int, ImagePlus) - Constructor for class ij.gui.TextRoi
-
- textValueChanged(TextEvent) - Method in class ij.gui.ColorChooser
-
- textValueChanged(TextEvent) - Method in class ij.gui.GenericDialog
-
- textValueChanged(TextEvent) - Method in class ij.macro.FunctionFinder
-
- textValueChanged(TextEvent) - Method in class ij.plugin.ChannelArranger
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Distribution
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Duplicator
-
- textValueChanged(TextEvent) - Method in class ij.plugin.filter.ImageProperties
-
- textValueChanged(TextEvent) - Method in class ij.plugin.frame.Editor
-
- textValueChanged(TextEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Histogram
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Resizer
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Scaler
-
- textValueChanged(TextEvent) - Method in class ij.plugin.Slicer
-
- TextWindow - Class in ij.text
-
Uses a TextPanel to displays text in a window.
- TextWindow(String, String, int, int) - Constructor for class ij.text.TextWindow
-
Opens a new single-column text window.
- TextWindow(String, String, String, int, int) - Constructor for class ij.text.TextWindow
-
Opens a new multi-column text window.
- TextWindow(String, String, ArrayList, int, int) - Constructor for class ij.text.TextWindow
-
Opens a new multi-column text window.
- TextWindow(String, int, int) - Constructor for class ij.text.TextWindow
-
Opens a new text window containing the contents of a text file.
- TextWriter - Class in ij.plugin
-
This plugin implements the File/Save As/Text command, which saves the
contents of Editor windows and TextWindows (e.g., "Log" and "Results").
- TextWriter() - Constructor for class ij.plugin.TextWriter
-
- theLabel - Variable in class ij.gui.GenericDialog
-
- theta - Variable in class ij.process.EllipseFitter
-
Angle in radians
- thread - Variable in class ij.gui.StackWindow
-
- ThreadLister - Class in ij.plugin
-
Displays thread information in a text window.
- ThreadLister() - Constructor for class ij.plugin.ThreadLister
-
- THREADS - Static variable in class ij.Prefs
-
- ThreadUtil - Class in ij.util
-
- ThreadUtil() - Constructor for class ij.util.ThreadUtil
-
- threshold(int) - Method in class ij.process.ByteProcessor
-
Sets pixels less than or equal to level to 0 and all other pixels to 255.
- threshold(int) - Method in class ij.process.ColorProcessor
-
Not implemented.
- threshold(int) - Method in class ij.process.FloatProcessor
-
Not implemented.
- threshold(int) - Method in class ij.process.ImageProcessor
-
Sets pixels less than or equal to level to 0 and all other
pixels to 255.
- threshold(int) - Method in class ij.process.ShortProcessor
-
- ThresholdAdjuster - Class in ij.plugin.frame
-
Adjusts the lower and upper threshold levels of the active image.
- ThresholdAdjuster() - Constructor for class ij.plugin.frame.ThresholdAdjuster
-
- Thresholder - Class in ij.plugin
-
This plugin implements the Process/Binary/Make Binary
and Convert to Mask commands.
- Thresholder() - Constructor for class ij.plugin.Thresholder
-
- ThresholdToSelection - Class in ij.plugin.filter
-
- ThresholdToSelection() - Constructor for class ij.plugin.filter.ThresholdToSelection
-
- TIFF - Static variable in class ij.io.FileInfo
-
- TIFF - Static variable in class ij.io.Opener
-
- TIFF_AND_DICOM - Static variable in class ij.io.Opener
-
- TiffDecoder - Class in ij.io
-
Decodes single and multi-image TIFF files.
- TiffDecoder(String, String) - Constructor for class ij.io.TiffDecoder
-
- TiffDecoder(InputStream, String) - Constructor for class ij.io.TiffDecoder
-
- TiffEncoder - Class in ij.io
-
Saves an image described by a FileInfo object as an uncompressed, big-endian TIFF file.
- TiffEncoder(FileInfo) - Constructor for class ij.io.TiffEncoder
-
- TILE_WIDTH - Static variable in class ij.io.TiffDecoder
-
- tileMirror(ImageProcessor, int, int, int, int) - Method in class ij.plugin.filter.FFTFilter
-
Puts ImageProcessor (ROI) into a new ImageProcessor of size width x height y at position (x,y).
- time(ImagePlus, long) - Static method in class ij.IJ
-
Experimental
- TO_BINARY - Static variable in interface ij.macro.MacroConstants
-
- TO_HEX - Static variable in interface ij.macro.MacroConstants
-
- TO_LOWER_CASE - Static variable in interface ij.macro.MacroConstants
-
- TO_SCALED - Static variable in interface ij.macro.MacroConstants
-
- TO_STRING - Static variable in interface ij.macro.MacroConstants
-
- TO_UNSCALED - Static variable in interface ij.macro.MacroConstants
-
- TO_UPPER_CASE - Static variable in interface ij.macro.MacroConstants
-
- toArray() - Method in class ij.gui.Overlay
-
Returns on array containing the ROIs in this Overlay.
- toArray() - Method in class ij.util.FloatArray
-
Returns a float array containing all elements of this FloatArray.
- toByteArray() - Method in class ij.gui.Plot
-
Writes this plot into a byte array containing (1) the serialized PlotProperties and
(2) the serialized Vector of all 'added' PlotObjects.
- toDouble(float[]) - Static method in class ij.util.Tools
-
Converts the float array 'a' to a double array.
- toEDM(ImageProcessor) - Method in class ij.plugin.filter.EDM
-
Converts a binary image into a 8-bit grayscale Euclidean Distance Map
(EDM).
- toFloat(int[]) - Static method in class ij.gui.Roi
-
Converts an int array to a float array.
- toFloat(int, FloatProcessor) - Method in class ij.process.ByteProcessor
-
Returns a FloatProcessor with the same image, no scaling or calibration
(pixel values 0 to 255).
- toFloat(int, FloatProcessor) - Method in class ij.process.ColorProcessor
-
Returns a FloatProcessor with one color channel of the image.
- toFloat(int, FloatProcessor) - Method in class ij.process.FloatProcessor
-
Returns this FloatProcessor.
- toFloat(int, FloatProcessor) - Method in class ij.process.ImageProcessor
-
Returns a FloatProcessor with the image or one color channel thereof.
- toFloat(int, FloatProcessor) - Method in class ij.process.ShortProcessor
-
Returns a FloatProcessor with the same image, no scaling or calibration
(pixel values 0 to 65535).
- toFloat(double[]) - Static method in class ij.util.Tools
-
Converts the double array 'a' to a float array.
- toFloatArrays() - Method in class ij.process.ByteProcessor
-
- toFloatProcessors() - Method in class ij.process.ByteProcessor
-
- toFront(Frame) - Static method in class ij.WindowManager
-
- toHyperStack(ImagePlus, int, int, int) - Static method in class ij.plugin.HyperStackConverter
-
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and
't' frames using the default ordering ("xyczt") and display mode ("Composite").
- toHyperStack(ImagePlus, int, int, int, String) - Static method in class ij.plugin.HyperStackConverter
-
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and
't' frames using the default ordering ("xyczt") and the specified display
mode ("composite", "color" or "grayscale").
- toHyperStack(ImagePlus, int, int, int, String, String) - Static method in class ij.plugin.HyperStackConverter
-
Converts the specified stack into a hyperstack with 'c' channels,
'z' slices and 't' frames.
- toInt(float[]) - Static method in class ij.gui.Roi
-
Converts a float array to an int array using truncation.
- toInt(float[], int[], int) - Static method in class ij.gui.Roi
-
- toIntR(float[]) - Static method in class ij.gui.Roi
-
Converts a float array to an int array using rounding.
- TOK_MASK - Static variable in interface ij.macro.MacroConstants
-
- TOK_SHIFT - Static variable in interface ij.macro.MacroConstants
-
- tokenize(String) - Method in class ij.macro.Tokenizer
-
Uses a StreamTokenizer to convert an ImageJ macro file into a token stream.
- Tokenizer - Class in ij.macro
-
This class converts an imageJ macro file file into a token stream.
- Tokenizer() - Constructor for class ij.macro.Tokenizer
-
- TOOL_CHANGED - Static variable in interface ij.IJEventListener
-
- TOOL_ID - Static variable in interface ij.macro.MacroConstants
-
- TOOL_KEY - Static variable in class ij.gui.Toolbar
-
- Toolbar - Class in ij.gui
-
The ImageJ toolbar.
- Toolbar() - Constructor for class ij.gui.Toolbar
-
- Tools - Class in ij.util
-
This class contains static utility methods.
- Tools() - Constructor for class ij.util.Tools
-
- TOOLS_MENU - Static variable in class ij.Menus
-
- TOP - Static variable in class ij.io.RoiDecoder
-
- TOP_LEFT - Static variable in class ij.gui.Plot
-
Legend positions
- TOP_MARGIN - Static variable in class ij.gui.Plot
-
- TOP_RIGHT - Static variable in class ij.gui.Plot
-
Legend positions
- toShape(String) - Static method in class ij.gui.Plot
-
Returns the number for a given plot symbol shape, -1 for xError and -2 for yError (all case-insensitive)
- toString() - Method in class ij.gui.ImageWindow
-
- toString() - Method in class ij.gui.Overlay
-
- toString() - Method in class ij.gui.PointRoi
-
- toString() - Method in class ij.gui.Roi
-
- toString() - Method in class ij.ImagePlus
-
- toString() - Method in class ij.ImageStack
-
- toString() - Method in class ij.io.FileInfo
-
- toString() - Method in class ij.macro.Program
-
- toString() - Method in class ij.macro.Symbol
-
- toString() - Method in class ij.macro.Variable
-
- toString() - Method in class ij.measure.Calibration
-
- toString() - Method in class ij.measure.ResultsTable
-
- toString() - Method in class ij.plugin.JavaScriptEvaluator
-
- toString() - Method in class ij.process.FHT
-
Returns a string containing information about this FHT.
- toString() - Method in class ij.process.FloatPolygon
-
- toString() - Method in class ij.process.ImageProcessor
-
Returns a string containing information about this ImageProcessor.
- toString() - Method in class ij.process.ImageStatistics
-
- toString() - Method in class ij.process.LUT
-
- toString() - Method in class ij.util.ArrayUtil
-
information to be displayed
- toWatershed(ImageProcessor) - Method in class ij.plugin.filter.EDM
-
Do watershed segmentation based on the EDM of the
foreground objects (nonzero pixels) in an 8-bit image.
- TRACE - Static variable in interface ij.macro.Debugger
-
- TRACED_ROI - Static variable in class ij.gui.Roi
-
- transform() - Method in class ij.process.FHT
-
Performs a forward transform, converting this image into the frequency domain.
- TRANSFORM - Static variable in class ij.Undo
-
Undo using a single image, or composite color stack, copy (limited to 200MB).
- transform1D(float[]) - Method in class ij.process.FHT
-
Performs an optimized 1D Fast Hartley Transform (FHT) of an array.
- Transformer - Class in ij.plugin.filter
-
Implements the Flip and Rotate commands in the Image/Transform submenu.
- Transformer() - Constructor for class ij.plugin.filter.Transformer
-
- translate(int, int) - Method in class ij.gui.Overlay
-
Moves all the ROIs in this overlay.
- translate(double, double) - Method in class ij.gui.Overlay
-
Moves all the ROIs in this overlay.
- translate(double, double) - Method in class ij.plugin.frame.RoiManager
-
Moves the selected ROIs or all the ROIs if none are selected.
- translate(double, double) - Method in class ij.process.ImageProcessor
-
Moves the image or selection vertically or horizontally by a specified
number of pixels.
- translate(int, int, boolean) - Method in class ij.process.ImageProcessor
-
- Translator - Class in ij.plugin.filter
-
This plugin implements the Image/Translate command.
- Translator() - Constructor for class ij.plugin.filter.Translator
-
- TRANSPARENT - Static variable in class ij.CompositeImage
-
Display modes (note: TRANSPARENT mode has not yet been implemented)
- TRIANGLE - Static variable in class ij.gui.Plot
-
Display points using an tiangular mark.
- TRIANGLE - Static variable in class ij.gui.PlotWindow
-
Deprecated.
- trim() - Method in class ij.ImageStack
-
Frees memory by deleting a few slices from the end of the stack.
- trim() - Method in class ij.VirtualStack
-
Does nothing.
- trimFileList(String[]) - Method in class ij.plugin.FolderOpener
-
Removes names that start with "." or end with ".db", ".txt", ".lut", "roi", ".pty", ".hdr", ".py", etc.
- trimKey(String) - Static method in class ij.Macro
-
- TrimmedButton - Class in ij.gui
-
This is an extended Button class used to reduce the width of the HUGE buttons on Mac OS X.
- TrimmedButton(String, int) - Constructor for class ij.gui.TrimmedButton
-
- trimProcessor() - Method in class ij.ImagePlus
-
Frees RAM by setting the snapshot (undo) buffer in
the current ImageProcessor to null.
- trimToSize() - Method in class ij.util.FloatArray
-
Trims the capacity of this FloatArray instance to be its current size,
minimizing the storage of the FloatArray instance.
- TRUE - Static variable in interface ij.macro.MacroConstants
-
- trySimplify() - Method in class ij.gui.ShapeRoi
-
Attempts to convert this ShapeRoi into a single non-composite Roi.
- tSelector - Variable in class ij.gui.StackWindow
-
- type - Variable in class ij.gui.Roi
-
- TYPE - Static variable in class ij.io.RoiDecoder
-
- type - Variable in class ij.macro.Symbol
-
- TYPE_CONVERSION - Static variable in class ij.Undo
-
Undo using an ImageProcessor copy.
- TypeConverter - Class in ij.process
-
This class converts an ImageProcessor to another data type.
- TypeConverter(ImageProcessor, boolean) - Constructor for class ij.process.TypeConverter
-
- types - Static variable in class ij.gui.PointRoi
-
- types - Static variable in class ij.io.Opener
-
- TZC - Static variable in class ij.plugin.HyperStackConverter
-
U
- umean - Variable in class ij.process.ImageStatistics
-
Uncalibrated mean
- UNCALIBRATED_OD - Static variable in class ij.measure.Calibration
-
- Undo - Class in ij
-
This class consists of static methods and
fields that implement ImageJ's Undo command.
- Undo() - Constructor for class ij.Undo
-
- undo() - Static method in class ij.Undo
-
- uninstallPlugin(String) - Static method in class ij.Menus
-
Deletes a command installed by Plugins/Shortcuts/Add Shortcut.
- unit - Variable in class ij.io.FileInfo
-
- units - Variable in class ij.gui.ProfilePlot
-
- UNKNOWN - Static variable in class ij.io.FileInfo
-
- UNKNOWN - Static variable in class ij.io.Opener
-
- unlock() - Method in class ij.ImagePlus
-
Unlocks the image.
- UnsharpMask - Class in ij.plugin.filter
-
This plugin-filter implements ImageJ's Unsharp Mask command.
- UnsharpMask() - Constructor for class ij.plugin.filter.UnsharpMask
-
- UNUSED - Static variable in class ij.gui.Toolbar
-
- unzoom() - Method in class ij.gui.ImageCanvas
-
Implements the Image/Zoom/Original Scale command.
- unzoom() - Method in class ij.gui.PlotCanvas
-
Implements the Image/Zoom/Original Scale command.
- update(Graphics) - Method in class ij.gui.ImageCanvas
-
- update() - Method in class ij.gui.Plot
-
Draws the plot again, ignored if the plot has not been drawn before or the plot is frozen.
- update(Graphics) - Method in class ij.gui.ProgressBar
-
- update(boolean, boolean) - Method in class ij.gui.Roi
-
If 'add' is true, adds this selection to the previous one.
- update(ImageProcessor) - Method in class ij.ImageStack
-
Updates this stack so its attributes, such as min, max,
calibration table and color model, are the same as 'ip'.
- update(int, ImagePlus, Roi) - Method in class ij.measure.ResultsTable
-
- update() - Method in class ij.plugin.frame.Channels
-
- update() - Static method in class ij.plugin.frame.ContrastAdjuster
-
Updates the ContrastAdjuster.
- update() - Static method in class ij.plugin.frame.LineWidthAdjuster
-
- update() - Static method in class ij.plugin.frame.ThresholdAdjuster
-
Notifies the ThresholdAdjuster that the image has changed.
- update() - Static method in class ij.plugin.PointToolOptions
-
- UPDATE_DISPLAY - Static variable in interface ij.macro.MacroConstants
-
- UPDATE_RESULTS - Static variable in interface ij.macro.MacroConstants
-
- updateAllChannelsAndDraw() - Method in class ij.CompositeImage
-
- updateAndDraw() - Method in class ij.CompositeImage
-
- updateAndDraw() - Method in class ij.ImagePlus
-
Updates this image from the pixel data in its
associated ImageProcessor, then displays it.
- updateAndDraw() - Method in class ij.plugin.frame.ContrastAdjuster
-
Resets this ContrastAdjuster and brings it to the front.
- updateAndRepaintWindow() - Method in class ij.ImagePlus
-
Calls updateAndDraw to update from the pixel data
and draw the image, and also repaints the image
window to force the information displayed above
the image (dimension, type, size) to be updated.
- updateArrayInspector() - Method in class ij.macro.Interpreter
-
Updates Array inspector if variable exists, otherwise closes
ArrayInspector
- updateChannelAndDraw() - Method in class ij.CompositeImage
-
- updateChannelAndDraw() - Method in class ij.ImagePlus
-
Updates this image from the pixel data in its
associated ImageProcessor, then displays it.
- updateChannels() - Static method in class ij.plugin.frame.Channels
-
- updateClassName(String, String) - Method in class ij.plugin.frame.Editor
-
Changes a plugins class name to reflect a new file name.
- updateClipRect() - Method in class ij.gui.Roi
-
- updateColumnHeadings(String) - Method in class ij.text.TextPanel
-
- updateComposite(int[], int) - Method in class ij.process.ColorProcessor
-
- updateComposite(int[], int) - Method in class ij.process.ImageProcessor
-
CompositeImage calls this method to generate an updated color image.
- updateCounts() - Method in class ij.gui.PointRoi
-
Updates the counts for each category in 'counters'
- UPDATED - Static variable in class ij.ImagePlus
-
- updateDebugWindow(String[], TextWindow) - Method in class ij.macro.Interpreter
-
- updateDisplay() - Method in class ij.text.TextPanel
-
- updateFont() - Static method in class ij.Menus
-
- updateFullWindow - Variable in class ij.gui.Roi
-
- updateHeadings() - Method in class ij.plugin.filter.Analyzer
-
Redisplays the results table.
- updateImage() - Method in class ij.CompositeImage
-
- updateImage(ImagePlus) - Method in class ij.gui.ImageWindow
-
- updateImage() - Method in class ij.gui.Plot
-
Draws the plot again, ignored if the plot has not been drawn before or the plot is frozen.
- updateImage() - Method in class ij.ImagePlus
-
ImageCanvas.paint() calls this method when the
ImageProcessor has generated a new image.
- updateImageJMenus() - Static method in class ij.Menus
-
- updateImagePlus(String, int) - Method in class ij.io.FileSaver
-
- updateMenus() - Static method in class ij.Menus
-
Updates the Image/Type and Window menus.
- updatePlayPauseIcon() - Method in class ij.gui.ScrollbarWithLabel
-
- updatePolygon() - Method in class ij.gui.PolygonRoi
-
- updatePosition(int, int, int) - Method in class ij.ImagePlus
-
- updateResults() - Method in class ij.measure.ResultsTable
-
Updates the Results window.
- updateSliceSelector() - Method in class ij.gui.StackWindow
-
Updates the stack scrollbar.
- updateStatusbarValue() - Method in class ij.ImagePlus
-
Redisplays the (x,y) coordinates and pixel value (which may
have changed) in the status bar.
- updateUrl(String) - Static method in class ij.io.Opener
-
Can't open imagej.nih.gov URLs due to encryption so redirect to mirror.nih.net.
- updateVirtualSlice() - Method in class ij.ImagePlus
-
Use to update the image when the underlying virtual stack changes.
- updateWideLine(float) - Method in class ij.gui.Roi
-
- updateWindowList() - Method in class ij.plugin.frame.SyncWindows
-
- updateWindowMenuItem(String, String) - Static method in class ij.Menus
-
Changes the name of an item in the Window menu.
- updateWindowMenuItem(ImagePlus, String, String) - Static method in class ij.Menus
-
Changes the name of an item in the Window menu.
- updateY(int, int) - Static method in class ij.plugin.filter.Analyzer
-
Returns an updated Y coordinate based on
the current "Invert Y Coordinates" flag.
- updateY(double, int) - Static method in class ij.plugin.filter.Analyzer
-
Returns an updated Y coordinate based on
the current "Invert Y Coordinates" flag.
- upperThreshold - Variable in class ij.process.ImageStatistics
-
Maximum threshold when "Limit to threshold" enabled
- URL - Static variable in class ij.IJ
-
- url - Variable in class ij.io.FileInfo
-
- URLOpener - Class in ij.plugin
-
Opens TIFFs, ZIP compressed TIFFs, DICOMs, GIFs and JPEGs using a URL.
- URLOpener() - Constructor for class ij.plugin.URLOpener
-
- useFileChooser - Static variable in class ij.Prefs
-
Use the file chooser to import and export image sequences on Windows and Linux
- useInfo(String) - Static method in class ij.plugin.FolderOpener
-
- useInvertingLut - Static variable in class ij.Prefs
-
Open 8-bit images with inverting LUT so 0 is white and 255 is black.
- useJFileChooser - Static variable in class ij.Prefs
-
Use JFileChooser instead of FileDialog to open and save files.
- useNamesAsLabels - Static variable in class ij.Prefs
-
Use ROI names as "show all" labels in the ROI Manager
- usePointer - Static variable in class ij.gui.ImageCanvas
-
- usePointerCursor - Static variable in class ij.Prefs
-
Use pointer cursor instead of cross
- USER_FUNCTION - Static variable in interface ij.macro.MacroConstants
-
- userFunction(double[], double) - Method in class ij.measure.CurveFitter
-
This function is called by the Minimizer and calculates the sum of squared
residuals for given parameters.
- UserFunction - Interface in ij.measure
-
A plugin should implement this interface for minimizing a single-valued function
or fitting a curve with a custom fit function.
- userFunction(double[], double) - Method in interface ij.measure.UserFunction
-
A user-supplied function
- useSystemProxies - Static variable in class ij.Prefs
-
Set the "java.net.useSystemProxies" property
- useTemplate(Plot) - Method in class ij.gui.Plot
-
Adjusts the format with another plot as a template, using the current
(usually default) flags of this plot.
- useTemplate(Plot, int) - Method in class ij.gui.Plot
-
Adjusts the format (style) with another plot as a template.
- UTILITIES_MENU - Static variable in class ij.Menus
-
V
- validDimensions() - Method in class ij.gui.StackWindow
-
- validExtensions - Static variable in class ij.plugin.PluginInstaller
-
- value - Variable in class ij.gui.HistogramWindow
-
- value - Variable in class ij.macro.Symbol
-
- valueChanged(ListSelectionEvent) - Method in class ij.plugin.frame.RoiManager
-
- valueOf(String) - Static method in enum ij.process.AutoThresholder.Method
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum ij.process.AutoThresholder.Method
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- valueUnit - Variable in class ij.io.FileInfo
-
- VAR - Static variable in interface ij.macro.MacroConstants
-
- VAR - Static variable in class ij.plugin.Filters3D
-
- Variable - Class in ij.macro
-
- Variable() - Constructor for class ij.macro.Variable
-
- Variable(double) - Constructor for class ij.macro.Variable
-
- Variable(String) - Constructor for class ij.macro.Variable
-
- Variable(Variable[]) - Constructor for class ij.macro.Variable
-
- VARIABLE_FUNCTION - Static variable in interface ij.macro.MacroConstants
-
- variableFunctionIDs - Static variable in interface ij.macro.MacroConstants
-
- variableFunctions - Static variable in interface ij.macro.MacroConstants
-
- VARIANCE - Static variable in class ij.plugin.filter.RankFilters
-
- VERSION - Static variable in class ij.ImageJ
-
Plugins should call IJ.getVersion() or IJ.getFullVersion() to get the version string.
- VERSION_OFFSET - Static variable in class ij.io.RoiDecoder
-
- versionLessThan(String) - Static method in class ij.IJ
-
Displays an error message and returns true if the
ImageJ version is less than the one specified.
- verticalProfile - Static variable in class ij.Prefs
-
Plot rectangular selectons vertically
- VGAP - Static variable in class ij.gui.ImageWindow
-
- virtualStack - Variable in class ij.io.FileInfo
-
- VirtualStack - Class in ij
-
This class represents an array of disk-resident images.
- VirtualStack() - Constructor for class ij.VirtualStack
-
Default constructor.
- VirtualStack(int, int) - Constructor for class ij.VirtualStack
-
- VirtualStack(int, int, ColorModel, String) - Constructor for class ij.VirtualStack
-
Creates an empty virtual stack.
- VirtualStack(int, int, int) - Constructor for class ij.VirtualStack
-
Creates a virtual stack with no backing storage.
- vistaHint - Static variable in class ij.Prefs
-
- vListMap - Variable in class ij.plugin.frame.SyncWindows
-
Hashtable to map list ids to image window ids.
- vwins - Variable in class ij.plugin.frame.SyncWindows
-
Indices of synchronized image windows are maintained in this Vector.
W
- wait(int) - Static method in class ij.IJ
-
Delays 'msecs' milliseconds.
- WAIT - Static variable in interface ij.macro.MacroConstants
-
- WAIT_FOR_USER - Static variable in interface ij.macro.MacroConstants
-
- WaitForUserDialog - Class in ij.gui
-
This is a non-modal dialog box used to ask the user to perform some task
while a macro or plugin is running.
- WaitForUserDialog(String, String) - Constructor for class ij.gui.WaitForUserDialog
-
- WaitForUserDialog(String) - Constructor for class ij.gui.WaitForUserDialog
-
- WAND - Static variable in class ij.gui.Toolbar
-
- Wand - Class in ij.gui
-
This class implements ImageJ's wand (tracing) tool.
- Wand(ImageProcessor) - Constructor for class ij.gui.Wand
-
Constructs a Wand object from an ImageProcessor.
- WandToolOptions - Class in ij.plugin
-
This plugin implements the Edit/Options/Wand Tool command.
- WandToolOptions() - Constructor for class ij.plugin.WandToolOptions
-
- wasCanceled() - Method in class ij.gui.GenericDialog
-
Returns true if the user clicked on "Cancel".
- wasError() - Method in class ij.macro.Interpreter
-
- wasOKed() - Method in class ij.gui.GenericDialog
-
Returns true if the user has clicked on "OK" or a macro is running.
- weightedColor - Static variable in class ij.Prefs
-
Color to grayscale conversion is weighted (0.299, 0.587, 0.114) if the variable is true.
- weightedHistogram() - Method in class ij.process.ColorProcessor
-
- weights - Variable in class ij.process.DownsizeTable
-
For each source point, weights for adding it to the destination point
given in the corresponding element of 'indices'
- west(ImageProcessor) - Method in class ij.plugin.filter.Shadows
-
- WHILE - Static variable in interface ij.macro.MacroConstants
-
- whiteIsZero - Variable in class ij.io.FileInfo
-
- whitePoint - Variable in class ij.process.ColorSpaceConverter
-
- wideLine - Variable in class ij.gui.Roi
-
- WIDTH - Static variable in class ij.gui.ProgressBar
-
- width - Variable in class ij.ImagePlus
-
- width - Variable in class ij.io.FileInfo
-
- width - Variable in class ij.process.ImageProcessor
-
- width - Variable in class ij.process.ImageStatistics
-
- WIDTH_KEY - Static variable in class ij.gui.Arrow
-
- WIDTH_KEY - Static variable in class ij.text.TextWindow
-
- WIDTHD - Static variable in class ij.io.RoiDecoder
-
- WildcardMatch - Class in ij.util
-
This class allows for simple wildcard pattern matching.
- WildcardMatch() - Constructor for class ij.util.WildcardMatch
-
- WildcardMatch(char, char) - Constructor for class ij.util.WildcardMatch
-
- win - Variable in class ij.ImagePlus
-
- WINDOW_MENU_ITEMS - Static variable in class ij.Menus
-
- windowActivated(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowActivated(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowActivated(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowActivated(WindowEvent) - Method in class ij.gui.PlotWindow
-
Called when the window is activated (WindowListener)
Window layout is finished at latest a few millisec after windowActivated, then the
'wasActivated' boolean is set to tell the ImageCanvas that resize events should
lead to resizing the canvas (before, creating the layout can lead to resize events)
- windowActivated(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowActivated(WindowEvent) - Method in class ij.ImageJ
-
- windowActivated(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowActivated(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.ColorThresholder
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.ContrastAdjuster
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.Editor
-
Override windowActivated in PlugInFrame to
prevent Mac menu bar from being installed.
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.Recorder
-
Override windowActivated in PlugInFrame.
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.RoiManager
-
- windowActivated(WindowEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
-
- windowActivated(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- windowClosed(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowClosed(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowClosed(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowClosed(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowClosed(WindowEvent) - Method in class ij.ImageJ
-
- windowClosed(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowClosed(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowClosed(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowClosed(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowClosed(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- windowClosing(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowClosing(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowClosing(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowClosing(WindowEvent) - Method in class ij.gui.NonBlockingGenericDialog
-
- windowClosing(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowClosing(WindowEvent) - Method in class ij.ImageJ
-
- windowClosing(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowClosing(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowClosing(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowClosing(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowClosing(WindowEvent) - Method in class ij.plugin.frame.SyncWindows
-
Override parent windowClosing method to clean up synchronized
resources on exit.
- windowClosing(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- windowDeactivated(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowDeactivated(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowDeactivated(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowDeactivated(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowDeactivated(WindowEvent) - Method in class ij.ImageJ
-
- windowDeactivated(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowDeactivated(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowDeactivated(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowDeactivated(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowDeactivated(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- windowDeiconified(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowDeiconified(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowDeiconified(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowDeiconified(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowDeiconified(WindowEvent) - Method in class ij.ImageJ
-
- windowDeiconified(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowDeiconified(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowDeiconified(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowDeiconified(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowDeiconified(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- windowIconified(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowIconified(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowIconified(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowIconified(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowIconified(WindowEvent) - Method in class ij.ImageJ
-
- windowIconified(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowIconified(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowIconified(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowIconified(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowIconified(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- WindowManager - Class in ij
-
This class consists of static methods used to manage ImageJ's windows.
- windowOpened(WindowEvent) - Method in class ij.gui.GenericDialog
-
- windowOpened(WindowEvent) - Method in class ij.gui.ImageWindow
-
- windowOpened(WindowEvent) - Method in class ij.gui.MessageDialog
-
- windowOpened(WindowEvent) - Method in class ij.gui.YesNoCancelDialog
-
- windowOpened(WindowEvent) - Method in class ij.ImageJ
-
- windowOpened(WindowEvent) - Method in class ij.macro.FunctionFinder
-
- windowOpened(WindowEvent) - Method in class ij.plugin.CommandFinder
-
- windowOpened(WindowEvent) - Method in class ij.plugin.frame.PlugInDialog
-
- windowOpened(WindowEvent) - Method in class ij.plugin.frame.PlugInFrame
-
- windowOpened(WindowEvent) - Method in class ij.plugin.Orthogonal_Views
-
- WindowOrganizer - Class in ij.plugin
-
This class implements the Window menu's "Show All", "Main Window", "Cascade" and "Tile" commands.
- WindowOrganizer() - Constructor for class ij.plugin.WindowOrganizer
-
- windowStateChanged(WindowEvent) - Method in class ij.gui.ImageWindow
-
- wipeBack() - Method in class ij.gui.PolygonRoi
-
- wList - Variable in class ij.plugin.frame.SyncWindows
-
List of currently displayed windows retrieved from ImageJ
window manager.
- WORD - Static variable in interface ij.macro.MacroConstants
-
- write(String) - Static method in class ij.IJ
-
- write(OutputStream) - Method in class ij.io.ImageWriter
-
Writes the image to the specified OutputStream.
- write(byte[]) - Method in class ij.io.LogStream
-
- write(byte[], int, int) - Method in class ij.io.LogStream
-
- write(int) - Method in class ij.io.LogStream
-
- write(Roi) - Method in class ij.io.RoiEncoder
-
Save the Roi to the file of stream.
- write(DataOutputStream) - Method in class ij.io.TextEncoder
-
Saves the image as a tab-delimited text file.
- write(OutputStream) - Method in class ij.io.TiffEncoder
-
Saves the image as a TIFF file.
- write(DataOutputStream) - Method in class ij.io.TiffEncoder
-
- WRITE - Static variable in interface ij.macro.MacroConstants
-
- writeImage(ImagePlus, String, int, int) - Method in class ij.plugin.filter.AVI_Writer
-
Writes an ImagePlus (stack) as AVI file.
- writeImage(ImagePlus, String, int) - Method in class ij.plugin.PNG_Writer
-
- Writer - Class in ij.plugin.filter
-
Deprecated.
- Writer() - Constructor for class ij.plugin.filter.Writer
-
Deprecated.
X
- X - Static variable in class ij.gui.Plot
-
Display points using an X-shaped mark.
- X - Static variable in class ij.gui.PlotWindow
-
Deprecated.
- x - Variable in class ij.plugin.frame.SyncWindows
-
- x1 - Variable in class ij.gui.Line
-
- X1 - Static variable in class ij.io.RoiDecoder
-
- x1d - Variable in class ij.gui.Line
-
- x1R - Variable in class ij.gui.Line
-
- x2 - Variable in class ij.gui.Line
-
- X2 - Static variable in class ij.io.RoiDecoder
-
- x2d - Variable in class ij.gui.Line
-
- x2R - Variable in class ij.gui.Line
-
- X_CENTER_OF_MASS - Static variable in class ij.measure.ResultsTable
-
- X_CENTROID - Static variable in class ij.measure.ResultsTable
-
- X_FORCE2GRID - Static variable in class ij.gui.Plot
-
flag for forcing frame to coincide with the grid/ticks in x direction (results in unused space)
- X_GRID - Static variable in class ij.gui.Plot
-
flag for drawing vertical grid lines for x axis
- X_LOG_NUMBERS - Static variable in class ij.gui.Plot
-
flag for logarithmic x-axis
- X_LOG_TICKS - Static variable in class ij.gui.Plot
-
flag for ticks (major and minor, if space) on logarithmic x axis
- X_MINOR_TICKS - Static variable in class ij.gui.Plot
-
flag for drawing minor ticks on linear (non-logarithmic) x axis
- X_NUMBERS - Static variable in class ij.gui.Plot
-
flag for numeric labels of x-axis ticks
- X_RANGE - Static variable in class ij.gui.Plot
-
Flag for addressing the x axis, for copying from a template: copy/write x axis range.
- X_RESOLUTION - Static variable in class ij.io.TiffDecoder
-
- X_TICKS - Static variable in class ij.gui.Plot
-
flag for drawing major ticks on linear (non-logarithmic) x axis
- xCenter - Variable in class ij.process.EllipseFitter
-
X centroid
- xCenterOfMass - Variable in class ij.process.ImageStatistics
-
- xCentroid - Variable in class ij.process.ImageStatistics
-
- xCoordinates - Variable in class ij.process.EllipseFitter
-
Initialized by makeRoi()
- XD - Static variable in class ij.io.RoiDecoder
-
- xInc - Variable in class ij.gui.ProfilePlot
-
- XINC - Static variable in class ij.plugin.frame.Editor
-
- XINC - Static variable in class ij.plugin.MacroInstaller
-
- xloc - Static variable in class ij.gui.WaitForUserDialog
-
- xMax - Variable in class ij.gui.Roi
-
- xMax - Variable in class ij.process.ImageProcessor
-
- xMin - Variable in class ij.process.ImageProcessor
-
- xMouse - Variable in class ij.gui.ImageCanvas
-
- xMouseStart - Variable in class ij.gui.ImageCanvas
-
- xor(ShapeRoi) - Method in class ij.gui.ShapeRoi
-
Unary exclusive or operator.
- XOR - Static variable in interface ij.process.Blitter
-
dst=dst XOR src
- xor(int) - Method in class ij.process.FloatProcessor
-
- xor(int) - Method in class ij.process.ImageProcessor
-
Binary exclusive OR of each pixel in the image or ROI with 'value'.
- xor(int) - Method in class ij.process.ShortProcessor
-
- xOrigin - Variable in class ij.measure.Calibration
-
X origin in pixels.
- xp - Variable in class ij.gui.PolygonRoi
-
- xp2 - Variable in class ij.gui.PolygonRoi
-
- xpf - Variable in class ij.gui.PolygonRoi
-
- xpoints - Variable in class ij.gui.Wand
-
The x-coordinates of the points in the outline.
- xpoints - Variable in class ij.process.FloatPolygon
-
- xSpline - Variable in class ij.gui.PolygonRoi
-
- xSrcStart - Variable in class ij.gui.ImageCanvas
-
- xstart - Variable in class ij.process.ImageStatistics
-
Used internally by AnalyzeParticles
- xValues - Variable in class ij.gui.ProfilePlot
-
- XY_Reader - Class in ij.plugin
-
This plugin implements the File/Import/XY Coordinates command.
- XY_Reader() - Constructor for class ij.plugin.XY_Reader
-
- XYCoordinates - Class in ij.plugin
-
Writes the XY coordinates and pixel values of all non-background
pixels to a tab-delimited text file.
- XYCoordinates() - Constructor for class ij.plugin.XYCoordinates
-
- XYWriter - Class in ij.plugin.filter
-
Saves the XY coordinates of the current ROI boundary.
- XYWriter() - Constructor for class ij.plugin.filter.XYWriter
-
- xyYtoXYZ(double, double, double) - Method in class ij.process.ColorSpaceConverter
-
- xyYtoXYZ(double[]) - Method in class ij.process.ColorSpaceConverter
-
- XYZtoLAB(double, double, double) - Method in class ij.process.ColorSpaceConverter
-
Convert XYZ to LAB.
- XYZtoLAB(double[]) - Method in class ij.process.ColorSpaceConverter
-
Convert XYZ to LAB.
- XYZtoRGB(double, double, double) - Method in class ij.process.ColorSpaceConverter
-
Convert XYZ to RGB.
- XYZtoRGB(double[]) - Method in class ij.process.ColorSpaceConverter
-
Convert XYZ to RGB
- XYZtoxyY(double, double, double) - Method in class ij.process.ColorSpaceConverter
-
- XYZtoxyY(double[]) - Method in class ij.process.ColorSpaceConverter
-
Y
- y - Variable in class ij.plugin.frame.SyncWindows
-
- y1 - Variable in class ij.gui.Line
-
- Y1 - Static variable in class ij.io.RoiDecoder
-
- y1d - Variable in class ij.gui.Line
-
- y1R - Variable in class ij.gui.Line
-
- y2 - Variable in class ij.gui.Line
-
- Y2 - Static variable in class ij.io.RoiDecoder
-
- y2d - Variable in class ij.gui.Line
-
- y2R - Variable in class ij.gui.Line
-
- Y_CENTER_OF_MASS - Static variable in class ij.measure.ResultsTable
-
- Y_CENTROID - Static variable in class ij.measure.ResultsTable
-
- Y_FORCE2GRID - Static variable in class ij.gui.Plot
-
flag for forcing frame to coincide with the grid/ticks in y direction (results in unused space)
- Y_GRID - Static variable in class ij.gui.Plot
-
flag for drawing horizontal grid lines for y axis
- Y_LOG_NUMBERS - Static variable in class ij.gui.Plot
-
flag for logarithmic y axis
- Y_LOG_TICKS - Static variable in class ij.gui.Plot
-
flag for ticks (major and minor, if space) on logarithmic y axis
- Y_MINOR_TICKS - Static variable in class ij.gui.Plot
-
flag for drawing minor ticks on linear (non-logarithmic) y axis
- Y_NUMBERS - Static variable in class ij.gui.Plot
-
flag for numeric labels of x-axis ticks
- Y_RANGE - Static variable in class ij.gui.Plot
-
Flag for addressing the y axis, for copying from a template: copy/write y axis range
- Y_RESOLUTION - Static variable in class ij.io.TiffDecoder
-
- Y_TICKS - Static variable in class ij.gui.Plot
-
flag for drawing major ticks on linear (non-logarithmic) y axis
- yCenter - Variable in class ij.process.EllipseFitter
-
X centroid
- yCenterOfMass - Variable in class ij.process.ImageStatistics
-
- yCentroid - Variable in class ij.process.ImageStatistics
-
- yCoordinates - Variable in class ij.process.EllipseFitter
-
Initialized by makeRoi()
- YD - Static variable in class ij.io.RoiDecoder
-
- YesNoCancelDialog - Class in ij.gui
-
A modal dialog box with a one line message and
"Yes", "No" and "Cancel" buttons.
- YesNoCancelDialog(Frame, String, String) - Constructor for class ij.gui.YesNoCancelDialog
-
- YesNoCancelDialog(Frame, String, String, String, String) - Constructor for class ij.gui.YesNoCancelDialog
-
- yesPressed() - Method in class ij.gui.YesNoCancelDialog
-
Returns true if the user dismissed dialog by pressing "Yes".
- YINC - Static variable in class ij.plugin.frame.Editor
-
- YINC - Static variable in class ij.plugin.MacroInstaller
-
- yLabel - Variable in class ij.gui.ProfilePlot
-
- yloc - Static variable in class ij.gui.WaitForUserDialog
-
- yMax - Variable in class ij.gui.HistogramWindow
-
- yMax - Variable in class ij.gui.Roi
-
- yMax - Variable in class ij.process.ImageProcessor
-
- yMin - Variable in class ij.process.ImageProcessor
-
- yMouse - Variable in class ij.gui.ImageCanvas
-
- yMouseStart - Variable in class ij.gui.ImageCanvas
-
- yOrigin - Variable in class ij.measure.Calibration
-
Y origin in pixels.
- yp - Variable in class ij.gui.PolygonRoi
-
- yp2 - Variable in class ij.gui.PolygonRoi
-
- ypf - Variable in class ij.gui.PolygonRoi
-
- ypoints - Variable in class ij.gui.Wand
-
The y-coordinates of the points in the outline.
- ypoints - Variable in class ij.process.FloatPolygon
-
- ySpline - Variable in class ij.gui.PolygonRoi
-
- ySrcStart - Variable in class ij.gui.ImageCanvas
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- ystart - Variable in class ij.process.ImageStatistics
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Used internally by AnalyzeParticles
Z
- Z_POSITION - Static variable in class ij.io.RoiDecoder
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- ZAxisProfiler - Class in ij.plugin
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Implements the Image/Stacks/Plot Z-axis Profile command,
which plots the selection mean gray value versus slice number.
- ZAxisProfiler() - Constructor for class ij.plugin.ZAxisProfiler
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- ZCT - Static variable in class ij.plugin.HyperStackConverter
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- ZERO_TRANSPARENT - Static variable in class ij.io.RoiDecoder
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- zeroClip() - Method in class ij.measure.Calibration
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Returns true if zero clipping is enabled.
- ZIP - Static variable in class ij.io.FileInfo
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- ZIP - Static variable in class ij.io.Opener
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- ZIP_ARCHIVE - Static variable in class ij.io.FileInfo
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- zipUncompress(byte[]) - Method in class ij.io.ImageReader
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TIFF Adobe ZIP support contributed by Jason Newton.
- zoom(String) - Method in class ij.gui.PlotCanvas
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Zoom operations that are handled by ij.plugin.Zoom
- Zoom - Class in ij.plugin
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This plugin implements the commands in the Image/Zoom submenu.
- Zoom() - Constructor for class ij.plugin.Zoom
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- zoom100Percent() - Method in class ij.gui.ImageCanvas
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Implements the Image/Zoom/View 100% command.
- zoom100Percent() - Method in class ij.gui.PlotCanvas
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Implements the Image/Zoom/View 100% command: Sets the original frame size as specified
in Edit/Options/Plots (unless the plot is frozen)
- zoomIn(int, int) - Method in class ij.gui.ImageCanvas
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Zooms in by making the window bigger.
- zoomIn(int, int) - Method in class ij.gui.PlotCanvas
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Zooms in by modifying the plot range; sx and sy are screen coordinates
- zoomOut(int, int) - Method in class ij.gui.ImageCanvas
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Zooms out by making the source rectangle (srcRect)
larger and centering it on (x,y).
- zoomOut(int, int) - Method in class ij.gui.PlotCanvas
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Zooms out by modifying the plot range; sx and sy are screen coordinates
- zoomTargetOX - Variable in class ij.gui.ImageCanvas
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Image (=offscreen) coordinates where the cursor was moved to for zooming
- zoomTargetOY - Variable in class ij.gui.ImageCanvas
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- zOrigin - Variable in class ij.measure.Calibration
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Z origin in pixels.
- ZProjector - Class in ij.plugin
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This plugin performs a z-projection of the input stack.
- ZProjector() - Constructor for class ij.plugin.ZProjector
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- ZProjector(ImagePlus) - Constructor for class ij.plugin.ZProjector
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Construction of ZProjector with image to be projected.
- zScale(ImagePlus, int, int) - Method in class ij.plugin.Resizer
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- zSelector - Variable in class ij.gui.StackWindow
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- ZTC - Static variable in class ij.plugin.HyperStackConverter
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