ij.plugin

Class DICOM

java.lang.Object

ij.ImagePlus

ij.plugin.DICOM

All Implemented Interfaces:

Measurements, PlugIn, ImageObserver, Cloneable

public class DICOM
extends ImagePlus
implements PlugIn

This plugin decodes DICOM files. If 'arg' is empty, it displays a file open dialog and opens and displays the image selected by the user. If 'arg' is a path, it opens the specified image and the calling routine can display it using "((ImagePlus)IJ.runPlugIn("ij.plugin.DICOM", path)).show()".

Field Summary

Fields inherited from class ij.ImagePlus

changes, CLOSED, COLOR_256, COLOR_RGB, compositeImage, currentSlice, dimensionsSet, flattenTitle, GRAY16, GRAY32, GRAY8, height, img, ip, locked, nChannels, nFrames, nSlices, OPENED, roi, setIJMenuBar, UPDATED, width, win

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface ij.measure.Measurements

ADD_TO_OVERLAY, ALL_STATS, AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, NaN_EMPTY_CELLS, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV

Constructor Summary

Constructors

Constructor and Description
DICOM() Default constructor.
DICOM(BufferedInputStream bis) Constructs a DICOM reader that using an BufferredInputStream.
DICOM(InputStream is) Constructs a DICOM reader that using an InputStream.

Method Summary

Modifier and Type	Method and Description
String	getInfo(String path) Returns the DICOM tags of the specified file as a string.
static String	getTagName(String id) Returns the name of the specified DICOM tag id.
void	open(String path) Opens the specified file as a DICOM.
void	run(String arg) This method is called when the plugin is loaded.

Methods inherited from class ij.ImagePlus

addImageListener, clone, close, convertIndexToPosition, copy, copy, copyAttributes, copyScale, createEmptyStack, createHyperStack, createImagePlus, createLut, createNewRoi, createRoiMask, createThresholdMask, crop, crop, deleteRoi, draw, draw, duplicate, flatten, flattenStack, flush, getAllStatistics, getBitDepth, getBufferedImage, getBytesPerPixel, getC, getCalibration, getCanvas, getChannel, getChannelProcessor, getClipboard, getCompositeMode, getCurrentSlice, getDefault16bitRange, getDimensions, getDimensions, getDisplayMode, getDisplayRangeMax, getDisplayRangeMin, getFileInfo, getFrame, getGlobalCalibration, getHeight, getHideOverlay, getID, getImage, getImageStack, getImageStackSize, getInfoProperty, getLocalCalibration, getLocationAsString, getLuts, getMask, getNChannels, getNDimensions, getNFrames, getNSlices, getNumericProperty, getOpenAsHyperStack, getOriginalFileInfo, getOverlay, getPixel, getPlot, getProcessor, getProp, getProperties, getProperty, getRawStatistics, getRoi, getShortTitle, getSizeInBytes, getSlice, getStack, getStackIndex, getStackSize, getStartTime, getStaticGlobalCalibration, getStatistics, getStatistics, getStatistics, getStatistics, getStringProperty, getT, getTitle, getType, getWidth, getWindow, getZ, hide, imageUpdate, isComposite, isDisplayedHyperStack, isHyperStack, isInvertedLut, isLocked, isLockedByAnotherThread, isProcessor, isStack, isThreshold, isVisible, killRoi, killStack, lock, lockSilently, mouseMoved, notifyListeners, okToDeleteRoi, paste, plotHistogram, plotHistogram, removeImageListener, repaintWindow, resetClipboard, resetDisplayRange, resetStack, restoreRoi, revert, saveRoi, setActivated, setActiveChannels, setAntialiasRendering, setC, setCalibration, setColor, setDefault16bitRange, setDimensions, setDisplayMode, setDisplayRange, setDisplayRange, setFileInfo, setGlobalCalibration, setHideOverlay, setIgnoreFlush, setIgnoreGlobalCalibration, setIJMenuBar, setIJMenuBar, setImage, setImage, setLut, setOpenAsHyperStack, setOverlay, setOverlay, setOverlay, setPlot, setPosition, setPosition, setPositionWithoutUpdate, setProcessor, setProcessor, setProperty, setRoi, setRoi, setRoi, setRoi, setSlice, setSliceWithoutUpdate, setStack, setStack, setStack, setT, setTitle, setType, setTypeToColor256, setWindow, setZ, show, show, startTiming, toString, trimProcessor, unlock, updateAndDraw, updateAndRepaintWindow, updateChannelAndDraw, updateImage, updatePosition, updateStatusbarValue, updateVirtualSlice

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DICOM

public DICOM()

Default constructor.

DICOM

public DICOM(InputStream is)

Constructs a DICOM reader that using an InputStream. Here is an example that shows how to open and display a DICOM:

                DICOM dcm = new DICOM(is);
                dcm.run("Name");
                dcm.show();
                

DICOM

public DICOM(BufferedInputStream bis)

Constructs a DICOM reader that using an BufferredInputStream.

Method Detail

run

public void run(String arg)

Description copied from interface: PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface PlugIn

open

public void open(String path)

Opens the specified file as a DICOM. Does not display a message if there is an error. Here is an example:

                DICOM dcm = new DICOM();
                dcm.open(path);
                if (dcm.getWidth()==0)
                        IJ.log("Error opening '"+path+"'");
                else
                        dcm.show();
                

getInfo

public String getInfo(String path)

Returns the DICOM tags of the specified file as a string.

getTagName

public static String getTagName(String id)

Returns the name of the specified DICOM tag id.