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public class ReferenceRangeEmissionProbability extends EmissionProbability
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Nested Class Summary
Nested Classes Modifier and Type Class Description public enum
ReferenceRangeEmissionProbability.METHOD
public class
ReferenceRangeEmissionProbability.Builder
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Method Summary
Modifier and Type Method Description static ReferenceRangeEmissionProbability
getInstanceFromHapidCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<Integer> hapidCounts, double probCorrect)
static ReferenceRangeEmissionProbability
getInstanceFromNodeCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<HaplotypeNode> nodeCounts, double probCorrect)
static ReferenceRangeEmissionProbability
getInstanceFromHapidCountMap(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Map<Integer, Integer> hapidCountMap, double probCorrect)
double
getProbObsGivenState(int state, int anchor)
double
getProbObsGivenState(int state, int obs, int node)
double
allCounts_oops(int state, int anchor)
double
allCounts(int state, int anchor)
double
allCountsWeighted(int state, int anchor)
double
weightedSum(int state, int anchor)
double
weightedMax(int state, int anchor)
String
toString()
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Method Detail
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getInstanceFromHapidCounts
static ReferenceRangeEmissionProbability getInstanceFromHapidCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<Integer> hapidCounts, double probCorrect)
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getInstanceFromNodeCounts
static ReferenceRangeEmissionProbability getInstanceFromNodeCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<HaplotypeNode> nodeCounts, double probCorrect)
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getInstanceFromHapidCountMap
static ReferenceRangeEmissionProbability getInstanceFromHapidCountMap(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Map<Integer, Integer> hapidCountMap, double probCorrect)
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getProbObsGivenState
double getProbObsGivenState(int state, int anchor)
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getProbObsGivenState
double getProbObsGivenState(int state, int obs, int node)
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allCounts_oops
double allCounts_oops(int state, int anchor)
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allCounts
double allCounts(int state, int anchor)
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allCountsWeighted
double allCountsWeighted(int state, int anchor)
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weightedSum
double weightedSum(int state, int anchor)
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weightedMax
double weightedMax(int state, int anchor)
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