Package 

Class ExtractFastaUtils

  • All Implemented Interfaces:
    
public class ExtractFastaUtils

    Class which holds various utilities for extracting fastas Created by zrm22 on 2/8/18.

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Field Summary

      Fields 
      Modifier and Type Field Description

    • Constructor Summary

      Constructors 
      Constructor Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      static String extractFastaSequence(List<VariantContext> variants, ReferenceRange referenceRange) Method to extract out a fasta sequence given a list of variantContexts This will fill in Ns whenever we do not have a variant context record for a given position

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

    • Method Detail

      • extractFastaSequence

         static String extractFastaSequence(List<VariantContext> variants, ReferenceRange referenceRange)

        Method to extract out a fasta sequence given a list of variantContexts This will fill in Ns whenever we do not have a variant context record for a given position