Package 

Class IndexHaplotypeKmersPlugin

  • All Implemented Interfaces:
    java.lang.Runnable , net.maizegenetics.plugindef.Plugin , net.maizegenetics.plugindef.PluginListener , net.maizegenetics.util.ProgressListener 
    @Deprecated() 
public class IndexHaplotypeKmersPlugin
extends AbstractPlugin

    author edbuckler

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      DataSet processData(DataSet input)
      String pluginUserManualURL()
      ImageIcon getIcon()
      String getButtonName()
      String getToolTipText()
      static void main(Array<String> args)
      String kmerMapFile() Text file to store haplotype scoring
      IndexHaplotypeKmersPlugin kmerMapFile(String value) Set Kmer Map File.
      Integer kmerSize() kmer size for indexing genome
      IndexHaplotypeKmersPlugin kmerSize(Integer value) Set Kmer Size.

      • Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

        addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getListeners, getMenu, getPanel, getParameter, getParentFrame, getUsage, getUsageHTML, hasListeners, isInteractive, isPluginParameter, performFunction, pluginDescription, pluginParameters, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameters, setParametersToDefault, setThreaded, trace, usageParameters, wasCancelled

      • Methods inherited from class net.maizegenetics.plugindef.Plugin

        getPluginInstance, isPlugin

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait