net.maizegenetics.analysis.distance

Class DominanceRelationshipMatrix

java.lang.Object

net.maizegenetics.analysis.distance.DominanceRelationshipMatrix

public class DominanceRelationshipMatrix
extends Object

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored. http://www.genetics.org/content/198/4/1759.abstract

Author:

Terry Casstevens

Method Summary

Modifier and Type	Method and Description
static DistanceMatrix	getInstance(GenotypeTable genotype) Compute Dominance Relationship Matrix for all pairs of taxa.
static DistanceMatrix	getInstance(GenotypeTable genotype, int maxAlleles, KinshipPlugin.ALGORITHM_VARIATION variation, ProgressListener listener) Compute Dominance Relationship Matrix for all pairs of taxa.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype)

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored.

Parameters:

genotype - Genotype Table used to compute dominance relationship

Returns:

Dominance Relationship Matrix

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype,
                                         int maxAlleles,
                                         KinshipPlugin.ALGORITHM_VARIATION variation,
                                         ProgressListener listener)

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored.

Parameters:

genotype - Genotype Table used to compute dominance relationship

maxAlleles -

variation -

listener - progress listener

Returns:

Dominance Relationship Matrix