AGPMap (net.maizegenetics:tassel 5.2.46 API)

Constructors
Constructor and Description
`AGPMap()`
`AGPMap(File mapfile)`
`AGPMap(File mapfile, boolean useAgpV2)`

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double`	`getCmFromPosition(int chromosome, int position)`
`double`	`getFirstGeneticPosition(int chromosome)`
`int[]`	`getFlankingMarkerIndices(int chromosome, double geneticPosition)`
`double`	`getGeneticPos(int markerIndex)`
`Object[][]`	`getInterval(int chromosome, int position)`
`double`	`getLastGeneticPosition(int chromosome)`
`static String`	`getMarkerName(Object[] marker)`
`static int`	`getMarkerNumber(Object[] marker)`
`static int`	`getMarkerPosition(Object[] marker)`
`int`	`getPhysPos(int markerIndex)`
`int`	`getPositionFromCm(int chromosome, double cM)`

public AGPMap(File mapfile,
              boolean useAgpV2)

public Object[][] getInterval(int chromosome,
                              int position)

public int[] getFlankingMarkerIndices(int chromosome,
                                      double geneticPosition)

public double getCmFromPosition(int chromosome,
                                int position)

public int getPositionFromCm(int chromosome,
                             double cM)

public double getFirstGeneticPosition(int chromosome)

public double getLastGeneticPosition(int chromosome)

public int getPhysPos(int markerIndex)

public double getGeneticPos(int markerIndex)

public static int getMarkerPosition(Object[] marker)

public static String getMarkerName(Object[] marker)

public static int getMarkerNumber(Object[] marker)

Class AGPMap