Uses of Class
net.maizegenetics.analysis.imputation.TransitionProbability

Packages that use TransitionProbability

Package	Description
net.maizegenetics.analysis.imputation	Methods for genotypic imputation including Viterbi HMM, FSFHap, and FILLIN

Uses of TransitionProbability in net.maizegenetics.analysis.imputation

Subclasses of TransitionProbability in net.maizegenetics.analysis.imputation

Modifier and Type	Class and Description
class	TransitionProbabilityWithVariableRecombination

Methods in net.maizegenetics.analysis.imputation with parameters of type TransitionProbability

Modifier and Type	Method and Description
BackwardForwardAlgorithm	BackwardForwardAlgorithm.transition(TransitionProbability transition)
BackwardForwardVariableStateNumber	BackwardForwardVariableStateNumber.transition(TransitionProbability transition)

Constructors in net.maizegenetics.analysis.imputation with parameters of type TransitionProbability

Constructor and Description
ViterbiAlgorithm(byte[] observations, TransitionProbability transitionMatrix, EmissionProbability obsGivenTrue, double[] pTrue)
ViterbiAlgorithmVariableStateNumber(byte[] observations, TransitionProbability transitionMatrix, EmissionProbability obsGivenTrue, double[] pTrue)