WHICH_ALLELE (net.maizegenetics:tassel 5.2.46 API)

java.lang.Object
- java.lang.Enum<WHICH_ALLELE>
- - net.maizegenetics.dna.WHICH_ALLELE

All Implemented Interfaces:

Serializable, Comparable<WHICH_ALLELE>
```
public enum WHICH_ALLELE
extends Enum<WHICH_ALLELE>
```
This defines the possible alleles.

Enum Constant Summary

Enum Constants
Enum Constant and Description
`Alternate` Alternate to Reference Allele
`Ancestral` Ancestral Allele
`GlobalMajor` Global Major Allele
`GlobalMinor` Global Minor Allele
`HighCoverage` High Coverage Allele
`LowCoverage` Low Coverage Allele
`Major` Major Allele - Most frequent allele.
`Minor` Minor Allele - Second most frequent allele.
`Minor2` Remaining Minor Alleles
`Minor3`
`Minor4`
`Minor5`
`Reference` Reference Allele
`Unknown` Diploid Unknown

Field Summary

Fields
Modifier and Type Field and Description

static int COUNT
Count of the number of allele types

Fields
Modifier and Type	Field and Description
`static int`	`COUNT` Count of the number of allele types

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static WHICH_ALLELE[]`	`frequencyAlleles()`
`int`	`index()` Sequential index that can be use for primitive arrays
`static WHICH_ALLELE`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static WHICH_ALLELE[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - Major
```
public static final WHICH_ALLELE Major
```
    Major Allele - Most frequent allele.
  - Minor
```
public static final WHICH_ALLELE Minor
```
    Minor Allele - Second most frequent allele.
  - GlobalMajor
```
public static final WHICH_ALLELE GlobalMajor
```
    Global Major Allele
  - GlobalMinor
```
public static final WHICH_ALLELE GlobalMinor
```
    Global Minor Allele
  - Reference
```
public static final WHICH_ALLELE Reference
```
    Reference Allele
  - Alternate
```
public static final WHICH_ALLELE Alternate
```
    Alternate to Reference Allele
  - HighCoverage
```
public static final WHICH_ALLELE HighCoverage
```
    High Coverage Allele
  - LowCoverage
```
public static final WHICH_ALLELE LowCoverage
```
    Low Coverage Allele
  - Minor2
```
public static final WHICH_ALLELE Minor2
```
    Remaining Minor Alleles
  - Minor3
```
public static final WHICH_ALLELE Minor3
```
  - Minor4
```
public static final WHICH_ALLELE Minor4
```
  - Minor5
```
public static final WHICH_ALLELE Minor5
```
  - Ancestral
```
public static final WHICH_ALLELE Ancestral
```
    Ancestral Allele
  - Unknown
```
public static final WHICH_ALLELE Unknown
```
    Diploid Unknown
- Field Detail
  - COUNT
```
public static final int COUNT
```
    Count of the number of allele types
- Method Detail
  - values
```
public static WHICH_ALLELE[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (WHICH_ALLELE c : WHICH_ALLELE.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static WHICH_ALLELE valueOf(String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    IllegalArgumentException - if this enum type has no constant with the specified name
    
    NullPointerException - if the argument is null
  - index
```
public int index()
```
    Sequential index that can be use for primitive arrays
  - frequencyAlleles
```
public static WHICH_ALLELE[] frequencyAlleles()
```

Enum WHICH_ALLELE

Enum Constant Summary

Field Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

Major

Minor

GlobalMajor

GlobalMinor

Reference

Alternate

HighCoverage

LowCoverage

Minor2

Minor3

Minor4

Minor5

Ancestral

Unknown

Field Detail

COUNT

Method Detail

values

valueOf

index

frequencyAlleles