Uses of Class
net.maizegenetics.dna.snp.score.AlleleProbabilityBuilder

Packages that use AlleleProbabilityBuilder

Package	Description
net.maizegenetics.dna.snp	Data structures for holding SNP and indel variation across taxa (samples) and genomic positions.
net.maizegenetics.dna.snp.score	Support for site scores (for example quality scores or imputation accuracy).

Uses of AlleleProbabilityBuilder in net.maizegenetics.dna.snp

Methods in net.maizegenetics.dna.snp with parameters of type AlleleProbabilityBuilder

Modifier and Type	Method and Description
GenotypeTableBuilder	GenotypeTableBuilder.addAlleleProbability(AlleleProbabilityBuilder alleleProbabilityBuilder)

Uses of AlleleProbabilityBuilder in net.maizegenetics.dna.snp.score

Methods in net.maizegenetics.dna.snp.score that return AlleleProbabilityBuilder

Modifier and Type	Method and Description
AlleleProbabilityBuilder	AlleleProbabilityBuilder.addTaxon(int taxon, byte[] values, SiteScore.SITE_SCORE_TYPE type)
AlleleProbabilityBuilder	AlleleProbabilityBuilder.addTaxon(int taxon, float[] values, SiteScore.SITE_SCORE_TYPE type)
static AlleleProbabilityBuilder	AlleleProbabilityBuilder.getAlleleProbabilityInstance(int numTaxa, int numSites, TaxaList taxaList)
static AlleleProbabilityBuilder	AlleleProbabilityBuilder.getInstance(ch.systemsx.cisd.hdf5.IHDF5Writer writer, int numTaxa, int numSites, TaxaList taxaList)