net.maizegenetics.dna.tag

Class AbstractTag

java.lang.Object

net.maizegenetics.dna.tag.AbstractTag

All Implemented Interfaces:

Comparable<Tag>, Tag

public abstract class AbstractTag
extends Object
implements Tag, Comparable<Tag>

Created by edbuckler on 7/26/14.

Method Summary

Modifier and Type	Method and Description
int	compareTo(Tag o)
boolean	equals(Object o)
int	hashCode()
boolean	isReference()
String	name()
byte[]	seq2BitAsBytes()
short	seqLength()
String	sequence()
String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.maizegenetics.dna.tag.Tag

seq2Bit, toCSVString, toReverseComplement

Method Detail

seqLength

public short seqLength()

Specified by:

seqLength in interface Tag

isReference

public boolean isReference()

Specified by:

isReference in interface Tag

name

public String name()

Specified by:

name in interface Tag

sequence

public String sequence()

Specified by:

sequence in interface Tag

seq2BitAsBytes

public byte[] seq2BitAsBytes()

Specified by:

seq2BitAsBytes in interface Tag

compareTo

public int compareTo(Tag o)

Specified by:

compareTo in interface Comparable<Tag>

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object