net.maizegenetics.gui

Class GenotypeTableMaskGeneticDistance

java.lang.Object

net.maizegenetics.gui.AbstractGenotypeTableMask

net.maizegenetics.gui.GenotypeTableMaskGeneticDistance

All Implemented Interfaces:

Serializable, GenotypeTableMask

public class GenotypeTableMaskGeneticDistance
extends AbstractGenotypeTableMask

Author:

Terry Casstevens

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface net.maizegenetics.gui.GenotypeTableMask

GenotypeTableMask.MaskType

Method Summary

Modifier and Type	Method and Description
static GenotypeTableMaskGeneticDistance	getInstanceCompareReference(GenotypeTable align, int index, double[] distances)
static GenotypeTableMaskGeneticDistance	getInstanceCompareReference(GenotypeTable align, String id, double[] distances)
static GenotypeTableMaskGeneticDistance	getInstanceCompareReference(GenotypeTable align, Taxon id, double[] distances)
byte	getMask(int taxon, int site)

Methods inherited from class net.maizegenetics.gui.AbstractGenotypeTableMask

getAlignment, getColor, getMaskType, setColor, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

getInstanceCompareReference

public static GenotypeTableMaskGeneticDistance getInstanceCompareReference(GenotypeTable align,
                                                                           Taxon id,
                                                                           double[] distances)

getInstanceCompareReference

public static GenotypeTableMaskGeneticDistance getInstanceCompareReference(GenotypeTable align,
                                                                           String id,
                                                                           double[] distances)

getInstanceCompareReference

public static GenotypeTableMaskGeneticDistance getInstanceCompareReference(GenotypeTable align,
                                                                           int index,
                                                                           double[] distances)

getMask

public byte getMask(int taxon,
                    int site)