Uses of Class
net.maizegenetics.stats.linearmodels.FactorModelEffect

Packages that use FactorModelEffect

Package	Description
net.maizegenetics.analysis.modelfitter	The modelfitter package contains classes that use various methods to fit multiple variant sites to a GWAS model.
net.maizegenetics.stats.linearmodels	Range of statistical and higher level linear algebra functions

Uses of FactorModelEffect in net.maizegenetics.analysis.modelfitter

Constructors in net.maizegenetics.analysis.modelfitter with parameters of type FactorModelEffect

Constructor and Description
ForwardStepNestedAdditiveSpliterator(List<AdditiveSite> siteList, List<ModelEffect> baseModel, double[] y, FactorModelEffect nestingFactor)
ForwardStepNestedAdditiveSpliterator(List<AdditiveSite> siteList, List<ModelEffect> baseModel, double[] y, int numberOfSites, FactorModelEffect nestingFactor)
ForwardStepSubsettingNestedAdditiveSpliterator(List<AdditiveSite> siteList, List<ModelEffect> baseModel, double[] y, int[] subset, FactorModelEffect nestingFactor)
ForwardStepSubsettingNestedAdditiveSpliterator(List<AdditiveSite> siteList, List<ModelEffect> baseModel, double[] y, int[] subset, int numberOfSites, FactorModelEffect nestingFactor)

Uses of FactorModelEffect in net.maizegenetics.stats.linearmodels

Methods in net.maizegenetics.stats.linearmodels that return FactorModelEffect

Modifier and Type	Method and Description
FactorModelEffect	NestedCovariateModelEffect.getFactorModelEffect()

Methods in net.maizegenetics.stats.linearmodels with parameters of type FactorModelEffect

Modifier and Type	Method and Description
DoubleMatrix	FactorModelEffect.getXtX2(FactorModelEffect fme)

Constructors in net.maizegenetics.stats.linearmodels with parameters of type FactorModelEffect

Constructor and Description
NestedCovariateModelEffect(CovariateModelEffect cme, FactorModelEffect fme)
NestedCovariateModelEffect(double[] covariate, FactorModelEffect fme)
NestedCovariateModelEffect(float[] covariate, FactorModelEffect fme)
WithinPopulationPermuter(double[] originalData, FactorModelEffect popEffect)