Package | Description |
---|---|
net.maizegenetics.taxa.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
Modifier and Type | Interface and Description |
---|---|
interface |
Tree
Interface for a phylogenetic or genealogical tree.
|
Modifier and Type | Class and Description |
---|---|
class |
NeighborJoiningTree
constructs a neighbor-joining tree from pairwise distances
Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. |
class |
SimpleTree
data structure for a binary/non-binary rooted/unrooted trees
|
class |
UPGMATree
constructs a UPGMA tree from pairwise distances
|
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