net.maizegenetics.analysis.gbs.pana

Class PanAH5ToAnchorPlugin

java.lang.Object

net.maizegenetics.plugindef.AbstractPlugin

net.maizegenetics.analysis.gbs.pana.PanAH5ToAnchorPlugin

All Implemented Interfaces:

Runnable, Plugin, PluginListener, ProgressListener

public class PanAH5ToAnchorPlugin
extends AbstractPlugin

Reformat HDF5 genotype to SimpleGenotypeSBit anchor.

Author:

Fei Lu

Field Summary

Fields inherited from class net.maizegenetics.plugindef.AbstractPlugin

DEFAULT_CITATION, POSITION_LIST_NONE, TAXA_LIST_NONE

Constructor Summary

Constructors

Constructor and Description
PanAH5ToAnchorPlugin()
PanAH5ToAnchorPlugin(Frame parentFrame)

Method Summary

Modifier and Type	Method and Description
String	getButtonName() Button name for this plugin to be used in buttons, etc.
ImageIcon	getIcon() Icon for this plugin to be used in buttons, etc.
String	getToolTipText() Tool Tip Text for this plugin
DataSet	performFunction(DataSet input) Performs function of this plugin.
void	setParameters(String[] args) Allows self-describing Plugins to use args to set parameters specific to itself.

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getMenu, getPanel, getParameter, getParameter, getParentFrame, getUsage, getUsageHTML, isInteractive, pluginDescription, pluginUserManualURL, processData, progress, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameter, setParameter, setParametersToDefault, setThreaded, trace, wasCancelled

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.maizegenetics.plugindef.Plugin

getPluginInstance, getPluginInstance, isPlugin

Constructor Detail

PanAH5ToAnchorPlugin

public PanAH5ToAnchorPlugin()

PanAH5ToAnchorPlugin

public PanAH5ToAnchorPlugin(Frame parentFrame)

Method Detail

performFunction

public DataSet performFunction(DataSet input)

Description copied from interface: Plugin

Performs function of this plugin.

Specified by:

performFunction in interface Plugin

Overrides:

performFunction in class AbstractPlugin

Parameters:

input - input

Returns:

resulting data set or null.

setParameters

public void setParameters(String[] args)

Description copied from interface: Plugin

Allows self-describing Plugins to use args to set parameters specific to itself.

Specified by:

setParameters in interface Plugin

Overrides:

setParameters in class AbstractPlugin

Parameters:

args - arguments

getIcon

public ImageIcon getIcon()

Description copied from interface: Plugin

Icon for this plugin to be used in buttons, etc.

Returns:

ImageIcon

getButtonName

public String getButtonName()

Description copied from interface: Plugin

Button name for this plugin to be used in buttons, etc.

Returns:

String

getToolTipText

public String getToolTipText()

Description copied from interface: Plugin

Tool Tip Text for this plugin

Returns:

String