net.maizegenetics.analysis.imputation

Class ViterbiAlgorithm

java.lang.Object

net.maizegenetics.analysis.imputation.ViterbiAlgorithm

public class ViterbiAlgorithm
extends Object

Constructor Summary

Constructors

Constructor and Description
ViterbiAlgorithm(byte[] observations, TransitionProbability transitionMatrix, EmissionProbability obsGivenTrue, double[] pTrue)

Method Summary

Modifier and Type	Method and Description
void	calculate()
byte[]	getMostProbableStateSequence()
void	initialize()
void	setStateProbability(double[] probTrueState)
void	updateDistanceAndHistory(int node)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ViterbiAlgorithm

public ViterbiAlgorithm(byte[] observations,
                        TransitionProbability transitionMatrix,
                        EmissionProbability obsGivenTrue,
                        double[] pTrue)

Method Detail

calculate

public void calculate()

initialize

public void initialize()

updateDistanceAndHistory

public void updateDistanceAndHistory(int node)

getMostProbableStateSequence

public byte[] getMostProbableStateSequence()

setStateProbability

public void setStateProbability(double[] probTrueState)