Hierarchy For Package net.maizegenetics.dna.snp

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • net.maizegenetics.dna.snp.AbstractMaskMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
    • net.maizegenetics.dna.snp.MaskGenotypeMatrix
    • net.maizegenetics.dna.snp.MaskGenotypeStatsMatrix
  • net.maizegenetics.dna.snp.CombineGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
  • net.maizegenetics.dna.snp.CoreGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
  • net.maizegenetics.dna.snp.ExportUtils
  • net.maizegenetics.dna.snp.FilterAndMaskGVCFGenomeSequence
  • net.maizegenetics.dna.snp.FilterGenotypeTable
  • net.maizegenetics.dna.snp.FilterList (implements java.util.List<E>)
  • net.maizegenetics.dna.snp.FilterSite (implements net.maizegenetics.dna.snp.Filter)
  • net.maizegenetics.dna.snp.FilterTableReport (implements net.maizegenetics.util.TableReport)
  • net.maizegenetics.dna.snp.FilterTaxa (implements net.maizegenetics.dna.snp.Filter)
  • net.maizegenetics.dna.snp.GenotypeTableBuilder
  • net.maizegenetics.dna.snp.GenotypeTableUtils
  • net.maizegenetics.dna.snp.HapMapHDF5Constants
  • net.maizegenetics.dna.snp.ImportUtils
  • net.maizegenetics.dna.snp.MaskMatrixBuilder
  • net.maizegenetics.dna.snp.MaskSiteMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
  • net.maizegenetics.dna.snp.MaskTaxaMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
  • net.maizegenetics.dna.snp.MergedGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
  • net.maizegenetics.dna.snp.NucleotideAlignmentConstants
  • net.maizegenetics.dna.snp.ProjectionBuilder
  • net.maizegenetics.dna.snp.ReadSequenceAlignmentUtils
  • net.maizegenetics.dna.snp.SimpleAllele (implements net.maizegenetics.dna.snp.Allele)
  • net.maizegenetics.dna.snp.TOPMGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
  • net.maizegenetics.dna.snp.Translate
    • net.maizegenetics.dna.snp.TranslateNegative
  • net.maizegenetics.dna.snp.TranslateBuilder
  • net.maizegenetics.dna.snp.TranslateIndex
    • net.maizegenetics.dna.snp.TranslateIndexRange
    • net.maizegenetics.dna.snp.TranslateIndexRedirect
      • net.maizegenetics.dna.snp.TranslateIndexRedirectUnordered
  • net.maizegenetics.dna.snp.TranslateIndexBuilder

Interface Hierarchy

• net.maizegenetics.dna.snp.Allele
• net.maizegenetics.dna.snp.Filter
• net.maizegenetics.dna.snp.GenotypeTable
• net.maizegenetics.dna.snp.MaskMatrix

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • net.maizegenetics.dna.snp.FilterTaxa.FILTER_TAXA_ATTRIBUTES
    • net.maizegenetics.dna.snp.GenotypeTable.ALLELE_SORT_TYPE
    • net.maizegenetics.dna.snp.FilterSite.SITE_RANGE_FILTER_TYPES
    • net.maizegenetics.dna.snp.FilterSite.FILTER_SITES_ATTRIBUTES
    • net.maizegenetics.dna.snp.GenotypeTable.GENOTYPE_TABLE_COMPONENT