net.maizegenetics.phenotype

Class PhenotypeUtils

java.lang.Object

net.maizegenetics.phenotype.PhenotypeUtils

public class PhenotypeUtils
extends Object

Author:

Terry Casstevens

Method Summary

Modifier and Type	Method and Description
static Phenotype	createPhenotypeFromTransform(ArrayList<String> taxaListNames, ArrayList<String> variableNames, List<ArrayList<Double>> data, String outputObjectName, ArrayList<Phenotype.ATTRIBUTE_TYPE> types)
static Phenotype	createPhenotypeObjectFromDB(ArrayList<ArrayList<String>> phenos)
static Phenotype	createPhenotypeObjectFromDB2(ArrayList<ArrayList<String>> phenos)
static void	write(Phenotype phenotype, String filename)
static void	writePlink(Phenotype phenotype, String filename)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

write

public static void write(Phenotype phenotype,
                         String filename)

writePlink

public static void writePlink(Phenotype phenotype,
                              String filename)

createPhenotypeObjectFromDB

public static Phenotype createPhenotypeObjectFromDB(ArrayList<ArrayList<String>> phenos)

createPhenotypeObjectFromDB2

public static Phenotype createPhenotypeObjectFromDB2(ArrayList<ArrayList<String>> phenos)

createPhenotypeFromTransform

public static Phenotype createPhenotypeFromTransform(ArrayList<String> taxaListNames,
                                                     ArrayList<String> variableNames,
                                                     List<ArrayList<Double>> data,
                                                     String outputObjectName,
                                                     ArrayList<Phenotype.ATTRIBUTE_TYPE> types)
                                              throws Exception

Throws:

Exception