observationsPath
TransformArgs
onlyNegativeStrands
Reads2CoverageArgs
onlyPositiveStrands
Reads2CoverageArgs
onlyVariants
Vcf2ADAMArgs
org
root
outputFile
PrintADAMArgs
outputOriginalBaseQualities
ADAM2FastqArgs
outputPath
ADAM2VcfArgs
AlleleCountArgs
CountContigKmersArgs
CountReadKmersArgs
Fasta2ADAMArgs
FlagStatArgs
FlattenArgs
Fragments2ReadsArgs
MergeShardsArgs
Reads2CoverageArgs
Reads2FragmentsArgs
TransformArgs
TransformFeaturesArgs
Vcf2ADAMArgs
VcfAnnotation2ADAMArgs
ViewArgs
outputPath2
ADAM2FastqArgs
outputPathArg
ViewArgs